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Full-Text Articles in Theory and Algorithms

A Hierarchical Approach To Improve The Ant Colony Optimization Algorithm, Bryan J. Fischer Jan 2023

A Hierarchical Approach To Improve The Ant Colony Optimization Algorithm, Bryan J. Fischer

EWU Masters Thesis Collection

The ant colony optimization algorithm (ACO) is a fast heuristic-based method for finding favorable solutions to the traveling salesman problem (TSP). When the data set reaches larger values however, the ACO runtime increases dramatically. As a result, clustering nodes into groups is an effective way to reduce the size of the problem while leveraging the advantages of the ACO algorithm. The method for recombining groups of nodes is explored by treating the graph as a hierarchy of clusters, and modifying the original ACO heuristic to operate on a hypergraph. This method of using hierarchical clustering is significantly faster than the …


Liquid Tab, Nathan Hulet Jan 2023

Liquid Tab, Nathan Hulet

Williams Honors College, Honors Research Projects

Guitar transcription is a complex task requiring significant time, skill, and musical knowledge to achieve accurate results. Since most music is recorded and processed digitally, it would seem like many tools to digitally analyze and transcribe the audio would be available. However, the problem of automatic transcription presents many more difficulties than are initially evident. There are multiple ways to play a guitar, many diverse styles of playing, and every guitar sounds different. These problems become even more difficult considering the varying qualities of recordings and levels of background noise.

Machine learning has proven itself to be a flexible tool …


Comparative Analysis Of Fullstack Development Technologies: Frontend, Backend And Database, Qozeem Odeniran Jan 2023

Comparative Analysis Of Fullstack Development Technologies: Frontend, Backend And Database, Qozeem Odeniran

College of Graduate Studies: Theses & Dissertations

Accessing websites with various devices has brought changes in the field of application development. The choice of cross-platform, reusable frameworks is very crucial in this era. This thesis embarks in the evaluation of front-end, back-end, and database technologies to address the status quo. Study-a explores front-end development, focusing on angular.js and react.js. Using these frameworks, comparative web applications were created and evaluated locally. Important insights were obtained through benchmark tests, lighthouse metrics, and architectural evaluations. React.js proves to be a performance leader in spite of the possible influence of a virtual machine, opening the door for additional research. Study b …


Face Anti-Spoofing And Deep Learning Based Unsupervised Image Recognition Systems, Enoch Solomon Jan 2023

Face Anti-Spoofing And Deep Learning Based Unsupervised Image Recognition Systems, Enoch Solomon

Theses and Dissertations

One of the main problems of a supervised deep learning approach is that it requires large amounts of labeled training data, which are not always easily available. This PhD dissertation addresses the above-mentioned problem by using a novel unsupervised deep learning face verification system called UFace, that does not require labeled training data as it automatically, in an unsupervised way, generates training data from even a relatively small size of data. The method starts by selecting, in unsupervised way, k-most similar and k-most dissimilar images for a given face image. Moreover, this PhD dissertation proposes a new loss function to …


Patch-Wise Training With Convolutional Neural Networks To Synthetically Upscale Cfd Simulations, John P. Romano, Alec C. Brodeur, Oktay Baysal Jan 2023

Patch-Wise Training With Convolutional Neural Networks To Synthetically Upscale Cfd Simulations, John P. Romano, Alec C. Brodeur, Oktay Baysal

Mechanical & Aerospace Engineering Faculty Publications

This paper expands the authors’ prior work[1], which focuses on developing a convolutional neural network (CNN) model capable of mapping time-averaged, unsteady Reynold’s-averaged Navier-Stokes (URANS) simulations to higher resolution results informed by time-averaged detached eddy simulations (DES). The authors present improvements over the prior CNN autoencoder model that result from hyperparameter optimization, increased data set augmentation through the adoption of a patch-wise training approach, and the predictions of primitive variables rather than vorticity magnitude. The training of the CNN model developed in this study uses the same URANS and DES simulations of a transonic flow around several NACA 4-digit airfoils …


The Effect Of The Width Of The Incident Pulse To The Dielectric Transition Layer In The Scattering Of An Electromagnetic Pulse — A Qubit Lattice Algorithm Simulation, George Vahala, Linda Vahala, Abhay K. Ram, Min Soe Jan 2023

The Effect Of The Width Of The Incident Pulse To The Dielectric Transition Layer In The Scattering Of An Electromagnetic Pulse — A Qubit Lattice Algorithm Simulation, George Vahala, Linda Vahala, Abhay K. Ram, Min Soe

Electrical & Computer Engineering Faculty Publications

The effect of the thickness of the dielectric boundary layer that connects a material of refractive index n1 to another of index n2is considered for the propagation of an electromagnetic pulse. A qubit lattice algorithm (QLA), which consists of a specially chosen non-commuting sequence of collision and streaming operators acting on a basis set of qubits, is theoretically determined that recovers the Maxwell equations to second-order in a small parameter ϵ. For very thin boundary layer the scattering properties of the pulse mimics that found from the Fresnel jump conditions for a plane wave - except that …


Adaptive Critic Network For Person Tracking Using 3d Skeleton Data, Joseph G. Zalameda, Alex Glandon, Khan M. Iftekharuddin, Mohammad S. Alam (Ed.), Vijayan K. Asari (Ed.) Jan 2023

Adaptive Critic Network For Person Tracking Using 3d Skeleton Data, Joseph G. Zalameda, Alex Glandon, Khan M. Iftekharuddin, Mohammad S. Alam (Ed.), Vijayan K. Asari (Ed.)

Electrical & Computer Engineering Faculty Publications

Analysis of human gait using 3-dimensional co-occurrence skeleton joints extracted from Lidar sensor data has been shown a viable method for predicting person identity. The co-occurrence based networks rely on the spatial changes between frames of each joint in the skeleton data sequence. Normally, this data is obtained using a Lidar skeleton extraction method to estimate these co-occurrence features from raw Lidar frames, which can be prone to incorrect joint estimations when part of the body is occluded. These datasets can also be time consuming and expensive to collect and typically offer a small number of samples for training and …


Influence Maximization Based On Community Detection And Dominating Sets, Ameya Marathe Jan 2023

Influence Maximization Based On Community Detection And Dominating Sets, Ameya Marathe

Master's Projects

An online platform where various people come together to share information and communicate is called a social network. These platforms are set apart from other means of communication mostly because you can follow and interact also with different people even some you never met, comment on their posts, and re-sharing their posts. Companies such as Amazon and Walmart use these platforms daily for marketing purposes, like spreading information regarding new products and services they offer. They carefully select a subset of users, called influencers, who are usually the ones with high influence over the rest of the users. Influencers receive …


Dynamic Function Learning Through Control Of Ensemble Systems, Wei Zhang, Vignesh Narayanan, Jr-Shin Li Jan 2023

Dynamic Function Learning Through Control Of Ensemble Systems, Wei Zhang, Vignesh Narayanan, Jr-Shin Li

Publications

Learning tasks involving function approximation are preva- lent in numerous domains of science and engineering. The underlying idea is to design a learning algorithm that gener- ates a sequence of functions converging to the desired target function with arbitrary accuracy by using the available data samples. In this paper, we present a novel interpretation of iterative function learning through the lens of ensemble dy- namical systems, with an emphasis on establishing the equiv- alence between convergence of function learning algorithms and asymptotic behavior of ensemble systems. In particular, given a set of observation data in a function learning task, we …


Cooperative Deep Q -Learning Framework For Environments Providing Image Feedback, Krishnan Raghavan, Vignesh Narayanan, Sarangapani Jagannathan Jan 2023

Cooperative Deep Q -Learning Framework For Environments Providing Image Feedback, Krishnan Raghavan, Vignesh Narayanan, Sarangapani Jagannathan

Publications

In this article, we address two key challenges in deep reinforcement learning (DRL) setting, sample inefficiency, and slow learning, with a dual-neural network (NN)-driven learning approach. In the proposed approach, we use two deep NNs with independent initialization to robustly approximate the action-value function in the presence of image inputs. In particular, we develop a temporal difference (TD) error-driven learning (EDL) approach, where we introduce a set of linear transformations of the TD error to directly update the parameters of each layer in the deep NN. We demonstrate theoretically that the cost minimized by the EDL regime is an approximation …


A Survey Of Using Machine Learning In Iot Security And The Challenges Faced By Researchers, Khawlah M. Harahsheh, Chung-Hao Chen Jan 2023

A Survey Of Using Machine Learning In Iot Security And The Challenges Faced By Researchers, Khawlah M. Harahsheh, Chung-Hao Chen

Electrical & Computer Engineering Faculty Publications

The Internet of Things (IoT) has become more popular in the last 15 years as it has significantly improved and gained control in multiple fields. We are nowadays surrounded by billions of IoT devices that directly integrate with our lives, some of them are at the center of our homes, and others control sensitive data such as military fields, healthcare, and datacenters, among others. This popularity makes factories and companies compete to produce and develop many types of those devices without caring about how secure they are. On the other hand, IoT is considered a good insecure environment for cyber …


A Structure-Aware Generative Adversarial Network For Bilingual Lexicon Induction, Bocheng Han, Qian Tao, Lusi Li, Zhihao Xiong Jan 2023

A Structure-Aware Generative Adversarial Network For Bilingual Lexicon Induction, Bocheng Han, Qian Tao, Lusi Li, Zhihao Xiong

Computer Science Faculty Publications

Bilingual lexicon induction (BLI) is the task of inducing word translations with a learned mapping function that aligns monolingual word embedding spaces in two different languages. However, most previous methods treat word embeddings as isolated entities and fail to jointly consider both the intra-space and inter-space topological relations between words. This limitation makes it challenging to align words from embedding spaces with distinct topological structures, especially when the assumption of isomorphism may not hold. To this end, we propose a novel approach called the Structure-Aware Generative Adversarial Network (SA-GAN) model to explicitly capture multiple topological structure information to achieve accurate …


Fast Multiscale Functional Estimation In Optimal Emg Placement For Robotic Prosthesis Controllers, Jin Ren, Guohui Song, Lucia Tabacu, Yuesheng Xu Jan 2023

Fast Multiscale Functional Estimation In Optimal Emg Placement For Robotic Prosthesis Controllers, Jin Ren, Guohui Song, Lucia Tabacu, Yuesheng Xu

Mathematics & Statistics Faculty Publications

Electromyogram (EMG) signals play a significant role in decoding muscle contraction information for robotic hand prosthesis controllers. Widely applied decoders require a large amount of EMG signals sensors, resulting in complicated calculations and unsatisfactory predictions. By the biomechanical process of single degree-of-freedom human hand movements, only several EMG signals are essential for accurate predictions. Recently, a novel predictor of hand movements adopted a multistage sequential adaptive functional estimation (SAFE) method based on the historical functional linear model (FLM) to select important EMG signals and provide precise projections.

However, SAFE repeatedly performs matrix-vector multiplications with a dense representation matrix of the …


Machine Learning-Based Jet And Event Classification At The Electron-Ion Collider With Applications To Hadron Structure And Spin Physics, Kyle Lee, James Mulligan, Mateusz Płoskoń, Felix Ringer, Feng Yuan Jan 2023

Machine Learning-Based Jet And Event Classification At The Electron-Ion Collider With Applications To Hadron Structure And Spin Physics, Kyle Lee, James Mulligan, Mateusz Płoskoń, Felix Ringer, Feng Yuan

Physics Faculty Publications

We explore machine learning-based jet and event identification at the future Electron-Ion Collider (EIC). We study the effectiveness of machine learning-based classifiers at relatively low EIC energies, focusing on (i) identifying the flavor of the jet and (ii) identifying the underlying hard process of the event. We propose applications of our machine learning-based jet identification in the key research areas at the future EIC and current Relativistic Heavy Ion Collider program, including enhancing constraints on (transverse momentum dependent) parton distribution functions, improving experimental access to transverse spin asymmetries, studying photon structure, and quantifying the modification of hadrons and jets in …


Machine-Assisted Discovery Of Integrable Symplectic Mappings, T. Zolkin, Y. Kharkov, S. Nagaitsev Jan 2023

Machine-Assisted Discovery Of Integrable Symplectic Mappings, T. Zolkin, Y. Kharkov, S. Nagaitsev

Physics Faculty Publications

We present a new automated method for finding integrable symplectic maps of the plane. These dynamical systems possess a hidden symmetry associated with an existence of conserved quantities, i.e., integrals of motion. The core idea of the algorithm is based on the knowledge that the evolution of an integrable system in the phase space is restricted to a lower-dimensional submanifold. Limiting ourselves to polygon invariants of motion, we analyze the shape of individual trajectories thus successfully distinguishing integrable motion from chaotic cases. For example, our method rediscovers some of the famous McMillan-Suris integrable mappings and ultradiscrete Painlevé equations. In total, …


An Explainable Artificial Intelligence Framework For The Predictive Analysis Of Hypo And Hyper Thyroidism Using Machine Learning Algorithms, Md. Bipul Hossain, Anika Shama, Apurba Adhikary, Avi Deb Raha, K. M. Aslam Uddin, Mohammad Amzad Hossain, Imtia Islam, Saydul Akbar Murad, Md. Shirajum Munir, Anupam Kumur Bairagi Jan 2023

An Explainable Artificial Intelligence Framework For The Predictive Analysis Of Hypo And Hyper Thyroidism Using Machine Learning Algorithms, Md. Bipul Hossain, Anika Shama, Apurba Adhikary, Avi Deb Raha, K. M. Aslam Uddin, Mohammad Amzad Hossain, Imtia Islam, Saydul Akbar Murad, Md. Shirajum Munir, Anupam Kumur Bairagi

Electrical & Computer Engineering Faculty Publications

The thyroid gland is the crucial organ in the human body, secreting two hormones that help to regulate the human body's metabolism. Thyroid disease is a severe medical complaint that could be developed by high Thyroid Stimulating Hormone (TSH) levels or an infection in the thyroid tissues. Hypothyroidism and hyperthyroidism are two critical conditions caused by insufficient thyroid hormone production and excessive thyroid hormone production, respectively. Machine learning models can be used to precisely process the data generated from different medical sectors and to build a model to predict several diseases. In this paper, we use different machine-learning algorithms to …


Joint Congestion And Contention Avoidance In A Scalable Qos-Aware Opportunistic Routing In Wireless Ad-Hoc Networks, Ali Parsa, Neda Moghim, Sasan Haghani Jan 2023

Joint Congestion And Contention Avoidance In A Scalable Qos-Aware Opportunistic Routing In Wireless Ad-Hoc Networks, Ali Parsa, Neda Moghim, Sasan Haghani

VMASC Publications

Opportunistic routing (OR) can greatly increase transmission reliability and network throughput in wireless ad-hoc networks by taking advantage of the broadcast nature of the wireless medium. However, network congestion is a barrier in the way of OR's performance improvement, and network congestion control is a challenge in OR algorithms, because only the pure physical channel conditions of the links are considered in forwarding decisions. This paper proposes a new method to control network congestion in OR, considering three types of parameters, namely, the backlogged traffic, the traffic flows' Quality of Service (QoS) level, and the channel occupancy rate. Simulation results …


Efficient Maritime Object Detection And Validation For Enhancing Safety Of Uncrewed Marine Systems, Ahmed Saglam, Yiannis Papelis Jan 2023

Efficient Maritime Object Detection And Validation For Enhancing Safety Of Uncrewed Marine Systems, Ahmed Saglam, Yiannis Papelis

VMASC Publications

Safe operation of uncrewed maritime systems is a major concern in the presence of other vehicles or obstacles. Typically, perception algorithms utilize sensor data to identify obstacles that must be avoided, and AI algorithms are used to interpret raw sensor data for use in navigation and object avoidance algorithms. However, perception algorithms are typically computationally expensive. In this paper, we present an efficient method for detecting obstacles using raw lidar data in the form of range or Point Cloud, employing computationally efficient techniques that do not depend on trained models or AI matching. The approach
converts the sensor readings into …


Assessing The Performance Of A Particle Swarm Optimization Mobility Algorithm In A Hybrid Wi-Fi/Lora Flying Ad Hoc Network, William David Paredes Jan 2023

Assessing The Performance Of A Particle Swarm Optimization Mobility Algorithm In A Hybrid Wi-Fi/Lora Flying Ad Hoc Network, William David Paredes

UNF Graduate Theses and Dissertations

Research on Flying Ad-Hoc Networks (FANETs) has increased due to the availability of Unmanned Aerial Vehicles (UAVs) and the electronic components that control and connect them. Many applications, such as 3D mapping, construction inspection, or emergency response operations could benefit from an application and adaptation of swarm intelligence-based deployments of multiple UAVs. Such groups of cooperating UAVs, through the use of local rules, could be seen as network nodes establishing an ad-hoc network for communication purposes.

One FANET application is to provide communication coverage over an area where communication infrastructure is unavailable. A crucial part of a FANET implementation is …


A Diversity-Enhanced Memetic Algorithm For Solving Electric Vehicle Routing Problems With Time Windows And Mixed Backhauls, Jianhua Xiao, Jingguo Du, Zhiguang Cao, Xingyi Zhang, Yunyun Niu Jan 2023

A Diversity-Enhanced Memetic Algorithm For Solving Electric Vehicle Routing Problems With Time Windows And Mixed Backhauls, Jianhua Xiao, Jingguo Du, Zhiguang Cao, Xingyi Zhang, Yunyun Niu

Research Collection School Of Computing and Information Systems

The electric vehicle routing problem (EVRP) has been studied increasingly because of environmental concerns. However, existing studies on the EVRP mainly focus on time windows and sole linehaul customers, which might not be practical as backhaul customers are also ubiquitous in reality. In this study, we investigate an EVRP with time windows and mixed backhauls (EVRPTWMB), where both linehaul and backhaul customers exist and can be served in any order. To address this challenging problem, we propose a diversity-enhanced memetic algorithm (DEMA) that integrates three types of novel operators, including genetic operators based on adaptive selection mechanism, a selection operator …


Apt Adversarial Defence Mechanism For Industrial Iot Enabled Cyber-Physical System, Safdar Hussain Javed, Maaz Bin Ahmad, Muhammad Asif, Waseem Akram, Khalid Mahmood, Ashok Kumar Das, Sachin Shetty Jan 2023

Apt Adversarial Defence Mechanism For Industrial Iot Enabled Cyber-Physical System, Safdar Hussain Javed, Maaz Bin Ahmad, Muhammad Asif, Waseem Akram, Khalid Mahmood, Ashok Kumar Das, Sachin Shetty

VMASC Publications

The objective of Advanced Persistent Threat (APT) attacks is to exploit Cyber-Physical Systems (CPSs) in combination with the Industrial Internet of Things (I-IoT) by using fast attack methods. Machine learning (ML) techniques have shown potential in identifying APT attacks in autonomous and malware detection systems. However, detecting hidden APT attacks in the I-IoT-enabled CPS domain and achieving real-time accuracy in detection present significant challenges for these techniques. To overcome these issues, a new approach is suggested that is based on the Graph Attention Network (GAN), a multi-dimensional algorithm that captures behavioral features along with the relevant information that other methods …


Intelligent Adaptive Gossip-Based Broadcast Protocol For Uav-Mec Using Multi-Agent Deep Reinforcement Learning, Zen Ren, Xinghua Li, Yinbin Miao, Zhuowen Li, Zihao Wang, Mengyao Zhu, Ximeng Liu, Deng, Robert H. Jan 2023

Intelligent Adaptive Gossip-Based Broadcast Protocol For Uav-Mec Using Multi-Agent Deep Reinforcement Learning, Zen Ren, Xinghua Li, Yinbin Miao, Zhuowen Li, Zihao Wang, Mengyao Zhu, Ximeng Liu, Deng, Robert H.

Research Collection School Of Computing and Information Systems

UAV-assisted mobile edge computing (UAV-MEC) has been proposed to offer computing resources for smart devices and user equipment. UAV cluster aided MEC rather than one UAV-aided MEC as edge pool is the newest edge computing architecture. Unfortunately, the data packet exchange during edge computing within the UAV cluster hasn't received enough attention. UAVs need to collaborate for the wide implementation of MEC, relying on the gossip-based broadcast protocol. However, gossip has the problem of long propagation delay, where the forwarding probability and neighbors are two factors that are difficult to balance. The existing works improve gossip from only one factor, …


I Know What You Are Searching For: Code Snippet Recommendation From Stack Overflow Posts, Zhipeng Gao, Xin Xia, David Lo, John C. Grundy, Xindong Zhang, Zhenchang Xing Jan 2023

I Know What You Are Searching For: Code Snippet Recommendation From Stack Overflow Posts, Zhipeng Gao, Xin Xia, David Lo, John C. Grundy, Xindong Zhang, Zhenchang Xing

Research Collection School Of Computing and Information Systems

Stack Overflow has been heavily used by software developers to seek programming-related information. More and more developers use Community Question and Answer forums, such as Stack Overflow, to search for code examples of how to accomplish a certain coding task. This is often considered to be more efficient than working from source documentation, tutorials, or full worked examples. However, due to the complexity of these online Question and Answer forums and the very large volume of information they contain, developers can be overwhelmed by the sheer volume of available information. This makes it hard to find and/or even be aware …


Class Activation Mapping And Uncertainty Estimation In Multi-Organ Segmentation, Md. Shibly Sadique, Walia Farzana, Ahmed Temtam, Khan Iftekharuddin, Khan Iftekharuddin (Ed.), Weijie Chen (Ed.) Jan 2023

Class Activation Mapping And Uncertainty Estimation In Multi-Organ Segmentation, Md. Shibly Sadique, Walia Farzana, Ahmed Temtam, Khan Iftekharuddin, Khan Iftekharuddin (Ed.), Weijie Chen (Ed.)

Electrical & Computer Engineering Faculty Publications

Deep learning (DL)-based medical imaging and image segmentation algorithms achieve impressive performance on many benchmarks. Yet the efficacy of deep learning methods for future clinical applications may become questionable due to the lack of ability to reason with uncertainty and interpret probable areas of failures in prediction decisions. Therefore, it is desired that such a deep learning model for segmentation classification is able to reliably predict its confidence measure and map back to the original imaging cases to interpret the prediction decisions. In this work, uncertainty estimation for multiorgan segmentation task is evaluated to interpret the predictive modeling in DL …


An Empirical Analysis Of Approximation Algorithms For The Unweighted Tree Augmentation Problem, Jacob Thomas Restanio Jan 2023

An Empirical Analysis Of Approximation Algorithms For The Unweighted Tree Augmentation Problem, Jacob Thomas Restanio

Graduate Theses, Dissertations, and Problem Reports (ETD)

In this thesis, we perform an experimental study of approximation algorithms for the tree augmentation problem (TAP). TAP is a fundamental problem in network design. The goal of TAP is to add the minimum number of edges from a given edge set to a tree so that it becomes 2-edge connected. Formally, given a tree T = (V, E), where V denotes the set of vertices and E denotes the set of edges in the tree, and a set of edges (or links) L ⊆ V × V disjoint from E, the objective is to find a set of edges …


Optimization Of Ported Cfd Kernels On Intel Data Center Gpu Max 1550 Using Oneapi Esimd, Mohammad Zubair, Aaron Walden, Gabriel Nastac, Eric Nielsen, Christoph Bauinger, Xiao Zhu Jan 2023

Optimization Of Ported Cfd Kernels On Intel Data Center Gpu Max 1550 Using Oneapi Esimd, Mohammad Zubair, Aaron Walden, Gabriel Nastac, Eric Nielsen, Christoph Bauinger, Xiao Zhu

Computer Science Faculty Publications

We describe our experience porting FUN3D’s CUDA-optimized kernels to Intel oneAPI SYCL.We faced several challenges, including foremost the suboptimal performance of the oneAPI code on Intel’s new data center GPU. Suboptimal performance of the oneAPI code was due primarily to high register spills, memory latency, and poor vectorization. We addressed these issues by implementing the kernels using Intel oneAPI’s Explicit SIMD SYCL extension (ESIMD) API. The ESIMD API enables the writing of explicitly vectorized kernel code, gives more precise control over register usage and prefetching, and better handles thread divergence compared to SYCL. The ESIMD code outperforms the optimized SYCL …


Unttangling Irregular Actin Cytoskeleton Architectures In Tomograms Of The Cell With Struwwel Tracer, Salim Sazzed, Peter Scheible, Jing He, Willy Wriggers Jan 2023

Unttangling Irregular Actin Cytoskeleton Architectures In Tomograms Of The Cell With Struwwel Tracer, Salim Sazzed, Peter Scheible, Jing He, Willy Wriggers

Computer Science Faculty Publications

In this work, we established, validated, and optimized a novel computational framework for tracing arbitrarily oriented actin filaments in cryo-electron tomography maps. Our approach was designed for highly complex intracellular architectures in which a long-range cytoskeleton network extends throughout the cell bodies and protrusions. The irregular organization of the actin network, as well as cryo-electron-tomography-specific noise, missing wedge artifacts, and map dimensions call for a specialized implementation that is both robust and efficient. Our proposed solution, Struwwel Tracer, accumulates densities along paths of a specific length in various directions, starting from locally determined seed points. The highest-density paths originating …


Properties Of (Claw, 4k₁, Bridge)-Free Graphs, Taite Lagrange Jan 2023

Properties Of (Claw, 4k₁, Bridge)-Free Graphs, Taite Lagrange

Theses and Dissertations (Comprehensive)

Given a set H of graphs, a graph G is H-free if it does not contain any graph in H as an induced subgraph. The complexity of the colouring problem is known when H is a set of graphs on four vertices, with three exceptions. One of those exceptions is the case of {claw, 4K1}-free graphs, for which our classes of {claw, 4K1, bridge}-free and {claw, 4K1, bridge,C4-twin}-free graphs are subclasses.

The original goal of this work was to prove that {claw, 4K1, …


The History Of The Enigma Machine, Jenna Siobhan Parkinson Dec 2022

The History Of The Enigma Machine, Jenna Siobhan Parkinson

History Publications

The history of the Enigma machine begins with the invention of the rotor-based cipher machine in 1915. Various models for rotor-based cipher machines were developed somewhat simultaneously in different parts of the world. However, the first documented rotor machine was developed by Dutch naval officers in 1915. Nonetheless, the Enigma machine was officially invented following the end of World War I by Arthur Scherbius in 1918 (Faint, 2016).


Improving Adjacency List Storage Methods For Polypeptide Similarity Analysis, Arianna Swensen Dec 2022

Improving Adjacency List Storage Methods For Polypeptide Similarity Analysis, Arianna Swensen

Honors Theses

Protein design is a complex biomolecular and computational problem. Working on increasingly large protein folding problems requires an improvement in current analysis methods available. This work first discusses various methods of protein design, including de novo protein design, which is the primary focus of this thesis. Then, a new approach utilizing a B+ tree to effectively store and query a graph of keys and vertices is proposed in order to store the number of times two polypeptides are considered to be similar. This approach is found to have a reduction in time complexity from current mapping methods and thus provides …