Theory and Algorithms Commons^™

A Machine Learning Model Of Perturb-Seq Data For Use In Space Flight Gene Expression Profile Analysis, Liam F. Johnson, James Casaletto, Lauren Sanders, Sylvain Costes

Graduate Industrial Research Symposium

The genetic perturbations caused by spaceflight on biological systems tend to have a system-wide effect which is often difficult to deconvolute it into individual signals with specific points of origin. Single cell multi-omic data can provide a profile of the perturbational effects, but does not necessarily indicate the initial point of interference within the network. The objective of this project is to take advantage of large scale and genome-wide perturbational datasets by using them to train a tuned machine learning model that is capable of predicting the effects of unseen perturbations in new data. Perturb-Seq datasets are large libraries of …

Active Discovering New Slots For Task-Oriented Conversation, Yuxia Wu, Tianhao Dai, Zhedong Zheng, Lizi Liao

Research Collection School Of Computing and Information Systems

Existing task-oriented conversational systems heavily rely on domain ontologies with pre-defined slots and candidate values. In practical settings, these prerequisites are hard to meet, due to the emerging new user requirements and ever-changing scenarios. To mitigate these issues for better interaction performance, there are efforts working towards detecting out-of-vocabulary values or discovering new slots under unsupervised or semi-supervised learning paradigms. However, overemphasizing on the conversation data patterns alone induces these methods to yield noisy and arbitrary slot results. To facilitate the pragmatic utility, real-world systems tend to provide a stringent amount of human labeling quota, which offers an authoritative way …

Screening Through A Broad Pool: Towards Better Diversity For Lexically Constrained Text Generation, Changsen Yuan, Heyan Huang, Yixin Cao, Qianwen Cao

Research Collection School Of Computing and Information Systems

Lexically constrained text generation (CTG) is to generate text that contains given constrained keywords. However, the text diversity of existing models is still unsatisfactory. In this paper, we propose a lightweight dynamic refinement strategy that aims at increasing the randomness of inference to improve generation richness and diversity while maintaining a high level of fluidity and integrity. Our basic idea is to enlarge the number and length of candidate sentences in each iteration, and choose the best for subsequent refinement. On the one hand, different from previous works, which carefully insert one token between two words per action, we insert …

Conditional Neural Heuristic For Multiobjective Vehicle Routing Problems, Mingfeng Fan, Yaoxin Wu, Zhiguang Cao, Wen Song, Guillaume Sartoretti, Huan Liu, Guohua Wu

Research Collection School Of Computing and Information Systems

Existing neural heuristics for multiobjective vehicle routing problems (MOVRPs) are primarily conditioned on instance context, which failed to appropriately exploit preference and problem size, thus holding back the performance. To thoroughly unleash the potential, we propose a novel conditional neural heuristic (CNH) that fully leverages the instance context, preference, and size with an encoder–decoder structured policy network. Particularly, in our CNH, we design a dual-attention-based encoder to relate preferences and instance contexts, so as to better capture their joint effect on approximating the exact Pareto front (PF). We also design a size-aware decoder based on the sinusoidal encoding to explicitly …

Win: Weight-Decay-Integrated Nesterov Acceleration For Faster Network Training, Pan Zhou, Xingyu Xie, Zhouchen Lin, Kim-Chuan Toh, Shuicheng Yan

Research Collection School Of Computing and Information Systems

Training deep networks on large-scale datasets is computationally challenging. This work explores the problem of “how to accelerate adaptive gradient algorithms in a general manner", and proposes an effective Weight-decay-Integrated Nesterov acceleration (Win) to accelerate adaptive algorithms. Taking AdamW and Adam as examples, per iteration, we construct a dynamical loss that combines the vanilla training loss and a dynamic regularizer inspired by proximal point method, and respectively minimize the first- and second-order Taylor approximations of dynamical loss to update variable. This yields our Win acceleration that uses a conservative step and an aggressive step to update, and linearly combines these …

Faster Rates For Compressed Federated Learning With Client-Variance Reduction, Haoyu Zhao, Konstantin Burlachenko, Zhize Li, Peter Richtarik

Research Collection School Of Computing and Information Systems

Due to the communication bottleneck in distributed and federated learning applications, algorithms using communication compression have attracted significant attention and are widely used in practice. Moreover, the huge number, high heterogeneity, and limited availability of clients result in high client -variance. This paper addresses these two issues together by proposing compressed and clientvariance reduced methods COFIG and FRECON. We prove an O( (1+\omega)3/2\surdN+ (1+\omega)N2/3 S\epsilon2 S\epsilon2 ) bound on the number of communication rounds of COFIG in the nonconvex setting, where N is the total number of clients, S is the number of clients participating in each round, \epsilon is …

Music Genre Classification Capabilities Of Enhanced Neural Network Architectures, Joshua Engelkes

Scholarly Horizons: University of Minnesota, Morris Undergraduate Journal

With the increase of digital music audio uploads, applications that deal with music information have been widely requested by streaming platforms. Automatic music genre classification is an important function of music recommendation and music search applications. Since the music genre categorization criteria continually shift, data-driven methods such as neural networks have been proven especially useful to music information retrieval. An enhanced CNN architecture, the Bottom-up Broadcast Neural Network, uses mel-spectrograms to push music data through a network where important low-level information is preserved. An enhanced RNN architecture, the Independent Recurrent Neural Network for Music Genre Classification, takes advantage of the …

Dl-Drl: A Double-Level Deep Reinforcement Learning Approach For Large-Scale Task Scheduling Of Multi-Uav, Xiao Mao, Guohua Wu, Mingfeng Fan, Zhiguang Cao, Witold Pedrycz

Research Collection School Of Computing and Information Systems

Exploiting unmanned aerial vehicles (UAVs) to execute tasks is gaining growing popularity recently. To address the underlying task scheduling problem, conventional exact and heuristic algorithms encounter challenges such as rapidly increasing computation time and heavy reliance on domain knowledge, particularly when dealing with large-scale problems. The deep reinforcement learning (DRL) based methods that learn useful patterns from massive data demonstrate notable advantages. However, their decision space will become prohibitively huge as the problem scales up, thus deteriorating the computation efficiency. To alleviate this issue, we propose a double-level deep reinforcement learning (DL-DRL) approach based on a divide and conquer framework …

Recommendations With Minimum Exposure Guarantees: A Post-Processing Framework, Ramon Lopes, Rodrigo Alves, Antoine Ledent, Rodrygo L. T. Santos, Marius Kloft

Research Collection School Of Computing and Information Systems

Relevance-based ranking is a popular ingredient in recommenders, but it frequently struggles to meet fairness criteria because social and cultural norms may favor some item groups over others. For instance, some items might receive lower ratings due to some sort of bias (e.g. gender bias). A fair ranking should balance the exposure of items from advantaged and disadvantaged groups. To this end, we propose a novel post-processing framework to produce fair, exposure-aware recommendations. Our approach is based on an integer linear programming model maximizing the expected utility while satisfying a minimum exposure constraint. The model has fewer variables than previous …

Imitate The Good And Avoid The Bad: An Incremental Approach To Safe Reinforcement Learning, Minh Huy Hoang, Mai Anh Tien, Pradeep Varakantham

Research Collection School Of Computing and Information Systems

A popular framework for enforcing safe actions in Reinforcement Learning (RL) is Constrained RL, where trajectory based constraints on expected cost (or other cost measures) are employed to enforce safety and more importantly these constraints are enforced while maximizing expected reward. Most recent approaches for solving Constrained RL convert the trajectory based cost constraint into a surrogate problem that can be solved using minor modifications to RL methods. A key drawback with such approaches is an over or underestimation of the cost constraint at each state. Therefore, we provide an approach that does not modify the trajectory based cost constraint …

The Measure Of Efficiency And Effectiveness When Using Artificial Intelligence (Ai) In Radiology, Jordan Watts

Theses, Dissertations and Capstones

Introduction: The use of artificial intelligence in radiology has helped radiologists identify patterns and abnormalities in medical images to diagnose and treat patients. Deep learning and machine learning algorithms have been used to assist physicians in detecting features that are not noticeable to the human eye. The FDA has approved almost 400 AI algorithms for radiology and estimated that the market for AI in medical imaging would grow from $21.48 billion in 2018 to $264.85 billion in 2028.

Purpose of the Study: The purpose of this research was to evaluate the use of artificial intelligence in radiology to determine its …

Advancing Deep Learning With Graph-Based Structural Insights: From Graph Classification To Semantic Segmentation, Xin Ma

Computer Science and Engineering Dissertations - Archive

Deep learning has profoundly transformed machine learning by offering sophisticated data representations, yet effectively incorporating structural information remains a challenge. Structural data, whether explicit or implicit, has the potential to significantly enhance the performance of deep learning tasks. This research investigates the benefits of structural information across three crucial tasks: classification, clustering, and segmentation. For explicit structural data, where inputs are directly represented as graphs, we investigate graph-level classification in brain connectivity networks. We introduce the Multi-resolution Edge Network (MENET), a novel framework designed to identify disease-specific connectomic benchmarks with high discriminatory power across diagnostic categories. MENET leverages graph-level representations …

Inexact Fixed-Point Proximity Algorithm For The ℓ₀ Sparse Regularization Problem, Ronglong Fang, Yuesheng Xu, Mingsong Yan

Mathematics & Statistics Faculty Publications

We study inexact fixed-point proximity algorithms for solving a class of sparse regularization problems involving the ℓ₀ norm. Specifically, the ℓ₀ model has an objective function that is the sum of a convex fidelity term and a Moreau envelope of the ℓ₀ norm regularization term. Such an ℓ₀ model is non-convex. Existing exact algorithms for solving the problems require the availability of closed-form formulas for the proximity operator of convex functions involved in the objective function. When such formulas are not available, numerical computation of the proximity operator becomes inevitable. This leads to inexact iteration algorithms. We investigate in this …

An Algorithm Based On Priority Rules For Solving A Multi-Drone Routing Problem In Hazardous Waste Collection, Youssef Harrath Dr., Jihene Kaabi Dr.

Research & Publications

This research investigates the problem of assigning pre-scheduled trips to multiple drones to collect hazardous waste from different sites in the minimum time. Each drone is subject to essential restrictions: maximum flying capacity and recharge operation. The goal is to assign the trips to the drones so that the waste is collected in the minimum time. This is done if the total flying time is equally distributed among the drones. An algorithm was developed to solve the problem. The algorithm is based on two main ideas: sort the trips according to a given priority rule and assign the current trip …

Trading Cloud Computing Stocks Using Sma, Xianrong Zheng, Lingyu Li

Information Technology & Decision Sciences Faculty Publications

As cloud computing adoption becomes mainstream, the cloud services market offers vast profits. Moreover, serverless computing, the next stage of cloud computing, comes with huge economic potential. To capitalize on this trend, investors are interested in trading cloud stocks. As high-growth technology stocks, investing in cloud stocks is both rewarding and challenging. The research question here is how a trading strategy will perform on cloud stocks. As a result, this paper employs an effective method—Simple Moving Average (SMA)—to trade cloud stocks. To evaluate its performance, we conducted extensive experiments with real market data that spans over 23 years. Results show …

Kinodynamic Motion Planning For A System With Squid Dynamics, Logan E. Beaver, Cong Wei, Wei-Kuo Yen

Mechanical & Aerospace Engineering Faculty Publications

This paper introduces a path planning algorithm for a system with squid dynamics in a cluttered environment. We capture the complex interactions of fin, arms, and body patterning by analyzing experimental data collected from observing squid motion. We extract nine motion primitives to build the control sequence for a time-optimal trajectory. This task is formulated as a mixed-integer program, and we generate the minimum-time trajectory using a sample-based approach. Numerical simulations illustrate the efficacy of this strategy and motivate ongoing and future efforts to exploration of squid motion features, improvement of the modeling, and experimental demonstrations of the motion planning …

Data Science In Finance: Challenges And Opportunities, Xianrong Zheng, Elizabeth Gildea, Sheng Chai, Tongxiao Zhang, Shuxi Wang

Information Technology & Decision Sciences Faculty Publications

Data science has become increasingly popular due to emerging technologies, including generative AI, big data, deep learning, etc. It can provide insights from data that are hard to determine from a human perspective. Data science in finance helps to provide more personal and safer experiences for customers and develop cutting-edge solutions for a company. This paper surveys the challenges and opportunities in applying data science to finance. It provides a state-of-the-art review of financial technologies, algorithmic trading, and fraud detection. Also, the paper identifies two research topics. One is how to use generative AI in algorithmic trading. The other is …

The Flesh And Silicon Mesh: A New Materialist Conception Of Advanced Digital Machines, Joshua Nieubuurt

English Faculty Publications

Digital machines, including artificial intelligence (AI), have long been held as potential agents of social change. From their binary role in cultural productions to the real-world implementation of such, digital machines have typically been considered within the Heideggerian “readiness-to-hand” category of Being. This paper seeks to alter conceptually this dynamic through the use of new materialism and Morton’s concept of the “mesh” to provide a new understanding of the social and pragmatic roles advanced digital machines play in ecologies in which they dwell and continue to emerge. Through briefly tracing the complex intermingling of advanced digital machines in the realms …

Machine-Learning-Enabled Diagnostics With Improved Visualization Of Disease Lesions In Chest X-Ray Images, Md. Fashiar Rahman, Tzu-Liang (Bill) Tseng, Michael Pokojovy, Peter Mccaffrey, Eric Walser, Scott Moen, Alex Vo, Johnny C. Ho

Mathematics & Statistics Faculty Publications

The class activation map (CAM) represents the neural-network-derived region of interest, which can help clarify the mechanism of the convolutional neural network’s determination of any class of interest. In medical imaging, it can help medical practitioners diagnose diseases like COVID-19 or pneumonia by highlighting the suspicious regions in Computational Tomography (CT) or chest X-ray (CXR) film. Many contemporary deep learning techniques only focus on COVID-19 classification tasks using CXRs, while few attempt to make it explainable with a saliency map. To fill this research gap, we first propose a VGG-16-architecture-based deep learning approach in combination with image enhancement, segmentation-based region …

Mapping Seagrass Distribution And Abundance: Comparing Areal Cover And Biomass Estimates Between Space-Based And Airborne Imagery, Victoria J. Hill, Richard C. Zimmerman, Dorothy A. Byron, Kenneth L. Heck Jr.

OES Faculty Publications

This study evaluated the effectiveness of Planet satellite imagery in mapping seagrass coverage in Santa Rosa Sound, Florida. We compared very-high-resolution aerial imagery (0.3 m) collected in September 2022 with high-resolution Planet imagery (~3 m) captured during the same period. Using supervised classification techniques, we accurately identified expansive, continuous seagrass meadows in the satellite images, successfully classifying 95.5% of the 11.18 km² of seagrass area delineated manually from the aerial imagery. Our analysis utilized an occurrence frequency (OF) product, which was generated by processing ten clear-sky images collected between 8 and 25 September 2022 to determine the frequency with which …

The Computational Search For Unidentified Central Configurations Of The Newtonian N-Body Problem, Hannah G. Havel

CURE Proceedings

The N-body problem is a field of study in mathematics and physics that involves predicting the motion of particles moving under their mutual gravitational attraction. It is vital in celestial mechanics, such as planning collision-free satellite orbit trajectories. When beginning to understand the N-body problem, we can start by looking at equal masses of these particles or celestial bodies. As particles move, their position and velocity change, both energy and angular momentum are conserved. Sets of constant energy and angular momentum, known as integral manifolds, are higher-dimensional figures that represent constraints of movement to a system. Integral manifolds are described …

Adaptive Neh With Constrained Nearest Neighbor Subtours For The Electric Vehicle Routing Problem With Time Windows, Andrew Struthers

All Master's Theses

The development of electric vehicles is currently considered one of the most innovative areas in manufacturing. Largely driven by the desire to reduce greenhouse emissions, electric vehicles are seen as a viable alternative to internal combustion engine cars. Starting from consumer cars, a dedicated effort is being made to translate this into commercial vehicles for freight and delivery. This research introduces a novel adaptive Nawaz, Enscore, Ham (NEH) algorithm with constrained nearest neighbor subtour (NEH-NN). This algorithm is tested on the standard benchmark problems in literature and used as a seed solution for the Genetic Algorithm (GA). The performance and …

Monotone Ordinal Expert Knowledge Acquisition For Explanation Of Machine Learning Models, Harlow Huber

All Master's Theses

There are significant difficulties for the acceptance of black-box Machine Learning (ML) models by subject matter experts (SMEs) despite significant achievements of many black-box models. A promising way to address this problem is by building a trustable, qualitative, interpretable models for the task based on SME knowledge. Such qualitative models can work as qualitative explainers of black-box models or as sanity checks for them. For instance, the expert model can expect that two cases belong to different classes, but the black box model predicts that they are in the same class. In this thesis, qualitative models operate with ordinal attributes, …

Graph Coloring Reconfiguration, Reem Mahmoud

Theses and Dissertations

Reconfiguration is the concept of moving between different solutions to a problem by transforming one solution into another using some prescribed transformation rule (move). Given two solutions s₁ and s₂ of a problem, reconfiguration asks whether there exists a sequence of moves which transforms s₁ into s₂. Reconfiguration is an area of research with many contributions towards various fields such as mathematics and computer science.
The k-coloring reconfiguration problem asks whether there exists a sequence of moves which transforms one k-coloring of a graph G into another. A move in this case is a type …

The Feasibility Of Motion Tracking Camera System For Magnetic Suspension Wind Tunnel Tests, Hisham M. Shehata, David Cox, Mark Schoenenberger, Colin Britcher, Eli Shellabarger, Timothy Schott, Brendan Mcgovern

Mechanical & Aerospace Engineering Faculty Publications

The Entry Systems Modeling (ESM) Program at NASA has actively participated in the re-development of the Magnetic Suspension Balance System (MSBS) at the six-inch subsonic wind tunnel at NASA Langley Research Center. This initiative aims to enhance the MSBS system's capabilities, enabling the testing of stingless entry vehicle models at supersonic speeds. To achieve this, control algorithms are required to ensure magnetic levitation control and stability for models during free-oscillation dynamic responses. Currently, the system relies on electromagnetic position sensors to provide real-time 3 degrees of freedom control of a rigid body. While this approach has proven successful for subsonic …

Using Feature Selection Enhancement To Evaluate Attack Detection In The Internet Of Things Environment, Khawlah Harahsheh, Rami Al-Naimat, Chung-Hao Chen

Electrical & Computer Engineering Faculty Publications

The rapid evolution of technology has given rise to a connected world where billions of devices interact seamlessly, forming what is known as the Internet of Things (IoT). While the IoT offers incredible convenience and efficiency, it presents a significant challenge to cybersecurity and is characterized by various power, capacity, and computational process limitations. Machine learning techniques, particularly those encompassing supervised classification techniques, offer a systematic approach to training models using labeled datasets. These techniques enable intrusion detection systems (IDSs) to discern patterns indicative of potential attacks amidst the vast amounts of IoT data. Our investigation delves into various aspects …

Adversarial Training Based Domain Adaptation Of Skin Cancer Images, Syed Qasim Gilani, Muhammad Umair, Maryam Naqvi, Oge Marques, Hee-Cheol Kim

Electrical & Computer Engineering Faculty Publications

Skin lesion datasets used in the research are highly imbalanced; Generative Adversarial Networks can generate synthetic skin lesion images to solve the class imbalance problem, but it can result in bias and domain shift. Domain shifts in skin lesion datasets can also occur if different instruments or imaging resolutions are used to capture skin lesion images. The deep learning models may not perform well in the presence of bias and domain shift in skin lesion datasets. This work presents a domain adaptation algorithm-based methodology for mitigating the effects of domain shift and bias in skin lesion datasets. Six experiments were …

Scene Classification Of Remote Sensing Image Based On Multi-Path Reconfigurable Neural Network, Wenyi Hu, Chunjie Lan, Tian Chen, Shan Liu, Lirong Yin, Lei Wang

Electrical & Computer Engineering Faculty Publications

Land image recognition and classification and land environment detection are important research fields in remote sensing applications. Because of the diversity and complexity of different tasks of land environment recognition and classification, it is difficult for researchers to use a single model to achieve the best performance in scene classification of multiple remote sensing land images. Therefore, to determine which model is the best for the current recognition classification tasks, it is often necessary to select and experiment with many different models. However, finding the optimal model is accompanied by an increase in trial-and-error costs and is a waste of …

Implications Of Alternative Communications And Sensing Technologies For Implementing Variable Speed Limit Control Through Connected Vehicles: Sag Curve As A Case Study, Reza Vatani Nezafat, Mecit Cetin, Elizabeth Williams, George F. List

Civil & Environmental Engineering Faculty Publications

Connected vehicles (CVs) will enable various applications to improve traffic flow. This paper's focus is to investigate how the potential implementation of variable speed limit (VSL) through different types of communication and sensing technologies on CVs makes it possible to mitigate congestion at a sag curve bottleneck. A VSL algorithm is developed and implemented in a simulation environment for controlling the inflow of vehicles to a sag curve to minimize delays and increase throughput. Both vehicle-to-vehicle (V2V) and infrastructure-to-vehicle (I2V) options for CVs are investigated when implementing the VSL control strategy in a simulation environment. Also, for measuring traffic density …

The Manifesto For Teaching And Learning In A Time Of Generative Ai: A Critical Collective Stance To Better Navigate The Future, Aras Bozkurt, Junhong Xiao, Robert Farrow, John Y. H. Bai, Chrissi Nerantzi, Stephanie Moore, Jon Dron, Christian M. Stracke, Lenandlar Singh, Helen Crompton, Apostolos Koutropoulos, Evgenii Terentev, Angelica Pazurek, Mark Nichols, Alexander M. Sidorkin, Eamon Costello, Steven Watson, Dónal Mulligan, Sarah Honeychurch, Charles B. Hodges, Mike Sharples, Andrew Swindell, Isak Frumin, Ahmed Tlili, Patricia J. Slagter Van Tryon, Melissa Bond, Maha Bali, Jing Leng, Kai Zhang, Mutlu Cukurnova, Thomas K. F. Chiu, Kyungmee Lee, Stefan Hrastinski, Manuel B. Garcia, Ramesh Chander Sharma, Bryan Alexander, Olaf Zawacki-Richter, Henk Huijser, Petar Jandrić, Chanjin Zheng, Peter Shea, Josep M. Duart, Chryssa Themeli, Anton Vorochkov, Sunagül Sani-Bozkurt, Robert L. Moore, Tutaleni Iita Asino

STEMPS Faculty Publications

This manifesto critically examines the unfolding integration of Generative AI (GenAI), chatbots, and algorithms into higher education, using a collective and thoughtful approach to navigate the future of teaching and learning. GenAI, while celebrated for its potential to personalize learning, enhance efficiency, and expand educational accessibility, is far from a neutral tool. Algorithms now shape human interaction, communication, and content creation, raising profound questions about human agency and biases and values embedded in their designs. As GenAI continues to evolve, we face critical challenges in maintaining human oversight, safeguarding equity, and facilitating meaningful, authentic learning experiences. This manifesto emphasizes that …