Computer Sciences Commons^™

Unfolding Particle Detector Effects And Solving Qcd Inverse Problem With Generative Ai, Tareq Saeed Alghamdi

Computer Science Theses & Dissertations

Advancements in artificial intelligence (AI) have revolutionized high-energy physics by enabling generative models to address key detector-related Challenges. This work explores the generative model to mitigate smearing, acceptance, and inefficiency in particle detectors, enhancing experimental precision.

We present a generative model-based framework to model and correct detector distortions. Using the Jefferson Lab CLAS g11 experiment as a case study, our approach successfully unfolds detector effects in multi-particle final states while preserving multidimensional correlations despite complex reaction mechanisms. A key focus is addressing the acceptance problem—accurately modeling detector acceptance without computationally expensive simulations. By training generative model-based framework on simulated detector …

Evaluating Immersion And Agency In Ai-Assisted Live Murder Mystery Games, Seraphina C. Courtney

LSU New Orleans Theses and Dissertations

This thesis explores the impact of AI-assisted narrative generation on player immersion and agency in a live-action roleplaying (LARP) experience. A live-action murder mystery game was designed and run in two formats: a static version with GPT-4 generated characters, dialogue, and stage directions, and a dynamic version where players created their own characters and improvised freely, guided by AI-generated narrative beats, a story element that moves the plot forward [21], that provided a narrative scaffolding for the players. The dynamic version employed a distributed computer vision system that tracks the movement of key items in the play-space so their relevance …

Algebraic Multigrid Methods For Nonsymmetric And Indefinite Problems: Theory And Applications, Ahsan Ali

Mathematics & Statistics ETDs

Algebraic multigrid (AMG) is a well-established and highly efficient solver for symmetric positive definite (SPD) systems arising from elliptic and parabolic PDEs, while nonsymmetric systems from hyperbolic PDEs remain a significant challenge. This dissertation develops AMG methods and theory for nonsymmetric problems. First, we develop a novel approach combining mode constraints from energy-minimization AMG with local approximations of ideal restriction in $\ell$AIR, resulting in constrained $\ell$AIR (C$\ell$AIR), which demonstrates scalable convergence across advective and diffusive problems. Second, we extend optimal AMG theory by deriving spectral radius estimates for the two-grid error transfer operator using matrix-induced orthogonality, enabling convergence predictions for …

Learning From Conditional Data Distributions, Jizhou Huang

McKelvey School of Engineering Graduate Student Theses & Dissertations

Traditional machine learning paradigms often rely on a single global model trained on an entire dataset, aiming for broad generalization across all instances. However, in many real-world applications, the underlying data distribution is heterogeneous, and meaningful predictions often require models that focus on specific subpopulations rather than treating the data as a whole. This motivates the study of learning from conditional distributions, a framework where predictive models are designed to capture the structure and properties of restricted subsets of the data, leading to improved accuracy, fairness, and interpretability. This dissertation explores three key subproblems that exemplify different aspects of learning …

Gene Regulatory Network Prediction Using Machine Learning, Deep Learning, And Hybrid Approaches, Sai Teja Mummadi, Md Khairul Islam, Victor Busov, Hairong Wei

Michigan Tech Publications

Construction of gene regulatory networks (GRNs) is essential for elucidating the regulatory mechanisms underlying metabolic pathways, biological processes, and complex traits. In this study, we developed and evaluated machine learning, deep learning, and hybrid approaches for constructing GRNs by integrating prior knowledge and large-scale transcriptomic data from Arabidopsis thaliana, poplar, and maize. Among these, hybrid models that combined convolutional neural networks and machine learning consistently outperformed traditional machine learning and statistical methods, achieving over 95% accuracy on the holdout test datasets. These models not only identified a greater number of known transcription factors regulating the lignin biosynthesis pathway but also …

Computational And In Vitro Investigation Of P. Crocatum Bioactive Compounds As Pancreatic Lipase Inhibitors, Gusnia Meilin Gholam, Dimas Andrianto, Dewi Anggraini Septaningsih, Mega Safithri

Karbala International Journal of Modern Science

Obesity, a prevalent metabolic disorder characterized by excessive fat accumulation, can severely affect overall health if left untreated. This study investigated the potential of a 70% ethanol extract from Piper crocatum (red betel) leaves as an in vitro inhibitor of pancreatic lipase (PL), supported by computational analyses to identify alternative compounds to orlistat. The phytochemical profile was characterized using LC-MS/MS, revealing alkaloids and terpenoids with contents of 1.1 ± 0.01 mg CE/g and 3.14 ± 0.3 mg UAE/g, respectively. The extract exhibited 49 ± 9.1% inhibition of PL activity. Molecular docking identified three promising compounds: calanolide A (10.43 kcal/mol), myricanone …

In Silico Prediction Of Cytotoxic T-Cell Epitopes From Helicobacter Pylori Virulence Factors Using An Immunoinformatics Approach, Demy Valerie Chacon, Kiana Alika Co, Daphne Noreen Enriquez, Aubrey Love Labarda, Reanne Eden Manongsong, Edward Kevin B. Bragais

Biology Faculty Publications

Background: Helicobacter pylori infects approximately half of the global population, leading to gastric and duodenal ulcers. Despite the availability of antibiotics, challenges such as patient reluctance, high treatment costs, and antibiotic resistance limit their effectiveness, making vaccination a promising alternative. This study used immunoinformatics to identify candidate epitopes for a multiepitope vaccine construct against H. pylori.

Material and methods: The protein variability server was utilized for conservation analysis. The epitopes were screened for antigenicity, allergenicity, toxicity, cross-reactivity, and population coverage. Selected epitopes were docked with their corresponding human leukocyte antigen (HLA) alleles, and thermodynamic quantities were determined. Five virulence …

Comparative Study Of Machine Learning Models For Predicting The Market Value Of Professional Football Players, Álvaro Salvador López

Master's Theses or Doctor of Nursing Practice

The market value of professional football players is a critical factor in decision-making for clubs, agents, and analysts. Accurate player valuation impacts transfers, contract negotiations, and financial planning. In recent years, data-driven approaches have emerged to support traditional scouting with predictive analytics. This thesis presents a comparative study of machine learning models to estimate the market value of football players based on historical performance and personal attributes.

This thesis presents a comparative study of two independently developed machine learning systems designed to predict the market value of football players for the 2020–2021 season. Both systems were trained using real data …

Reviving The Lost Art: Historical Foundations And Future Pathways For Bespoke Service In Luxury Retail, Andrew Burnstine

Faculty and Staff Publications & Presentations

The mid-20th century witnessed a zenith of deeply personalized, bespoke service within iconic luxury specialty retailers. This paper critically analyzes the foundational principles of this historical bespoke service model, extending Service-Dominant (S-D) Logic and retail evolution theory, to propose a robust framework for its modern revival. Employing a rigorous qualitative, multiple-case study approach, grounded in extensive historical and media analysis of four archetypal American and British luxury boutiques, and uniquely informed by an insider-ethnographic perspective on the central case exemplar ("Martha's"), the study distills six core principles: Profound Client Knowledge, Visionary Curation & Styling, Anticipatory & Proactive Service, The Exclusive …

Optimizing Distributed Boundary Exchanges For Benchmarks, Solvers And Sparse Matrix Operations, Gerald Collom

Computer Science ETDs

Boundary exchanges dominate the cost of both stenciled codes and those that rely on sparse matrix operations. The performance of large boundary exchanges is limited by synchronization overheads and injection bandwidth limitations. Irregular boundary exchanges incur additional overheads due to the large number of required messages. This thesis investigates multiple methods for improving the performance and scalability of both Cartesian and irregular boundary exchanges. Since boundary exchanges are typically performed iteratively, persistent communication presents an opportunity for optimization by sharing and amortizing setup costs. Partitioned communication is also explored to increase asynchrony, reducing bottlenecks from synchronization overheads and data congestion. …

Exploring Adversarial Threats To Neuralhash: A Perceptual Hashing Algorithm, Gurleen Kaur

Student Theses

Perceptual hashing algorithms are algorithms that generate content-based image hashes by extracting perceptual features from the images. Unlike cryptographic hashes, which exhibit significant changes with even slight input alterations, perceptual hashes do not change when modifications like compression, color correction and brightness are applied to the images. These hashes are designed to remain similar for inputs that are visually or perceptually alike, which has led to their widespread application in detecting duplicate images, finding similar images for reverse image search and to detecting inappropriate content of Child sexual abuse (CSAM) images by comparing image hashes with dataset of known perceptual …

Network Intelligence For Next-Generation Wireless Networks: Advancing Distribution And Coordination, Yonatan Melese Worku

Electrical and Computer Engineering ETDs

Next-generation wireless networks, encompassing 6G and beyond, face rigorous demands for ultra-low latency, ubiquitous connectivity, exceptionally high data rates, and robust security, necessitating innovative approaches to resource optimization and network protection. This dissertation proposes a pioneering framework that synergizes advanced methodologies—deep reinforcement learning, deep learning, blockchain, and multi-agent systems—to address these challenges. Distributed architectures, underpinned by AI-driven multi-agent systems, form the backbone of this framework, enabling seamless integration and intelligent orchestration across diverse domains. The research advances IoT-based systems leveraging machine learning for resource efficiency in healthcare applications, develops reinforcement learning-driven frameworks to optimize energy and coverage for Unmanned Aerial …

Optimization And Model Averaging Of Histogram-Based Place Cell Firing Rate Maps Using The Point Process Framework, Murat Okatan

Turkish Journal of Electrical Engineering and Computer Sciences

The firing rate of hippocampal place cells depends on the spatial position of the organism in an environment. This position dependence is often quantified by constructing spike-in-location and time-in-location histograms, the ratio of which yields a firing rate map. The purpose of this study is to present a new method for optimizing the spatial resolution of histogram-based firing rate maps. It is pointed out that histogram-based firing rate maps are conditional intensity functions of inhomogeneous Poisson process models of neural spike trains, and, as such, they can be optimized through model selection within the point process framework. The point process …

Isar Imaging Of Drone Swarms At 77 Ghz, Remzi̇ye Büşra Çoruk, Ali̇ Kara, Eli̇f Aydin

Turkish Journal of Electrical Engineering and Computer Sciences

The proliferation of easily available, internet-purchased drones, coupled with the emergence of coordinated drone swarms, poses a significant security threat for airspace. Detecting these swarms is crucial to prevent potential accidents, criminal misuse, and airspace disruptions. This paper proposes a novel inverse synthetic aperture radar (ISAR) imaging technique for high-resolution reconstruction of drone swarms at 77 GHz millimeter wave (mmWave) frequency, offering a valuable tool for military and defense anti-drone systems. The key parameters affecting down-range and cross-range resolution (0.05 m), ultimately enabling the generation of detailed ISAR images are discussed. Here, we create diverse scenarios encompassing various swarm formations, …

Adaptive Backstepping Control With Real-Time Fuzzy Logic Parameter Selection Of A Field- Oriented Control-Based Permanent Magnet Synchronous Motor Driver, Fati̇h Bayir, Erkan Zergeroğlu

Turkish Journal of Electrical Engineering and Computer Sciences

This study proposes an adaptive backstepping control approach integrated with a real-time fuzzy logic parameter selection algorithm to enhance the robustness and stability of a permanent magnet synchronous motor (PMSM) controller under parametric uncertainties and external disturbances. Although backstepping control performs well under varying disturbances, it must be supported by an adaptive control algorithm to effectively handle both variable disturbances and parameter uncertainties. Moreover, because the fixed parameters of the adaptive backstepping controller limit the dynamic performance of the velocity tracking loop, this study incorporates fuzzy logic control—a soft computing algorithm capable of real-time parameter adjustment—to achieve more robust outcomes. …

Excitation Of Synchronous Machine By Contactless Power Transfer - Review From The Perspective Of Electric Vehicles, Erhan Tuncel, Emi̇n Yildiriz

Turkish Journal of Electrical Engineering and Computer Sciences

Electrically excited synchronous machines (EESMs) are one of the best choices for propulsion motor appli cation in electric vehicles (EVs) due to their wide torque-speed characteristics. Moreover, the air gap flux density can be easily controlled by varying the excitation current. Despite these advantages, it is difficult to transfer the current required by the rotating excitation winding into the motor under conventional methods, so it is not widely used in EVs. In this study, the emerging literature on contactless power transfer methods is reviewed for applicability to an EESM that can operate as an EV propulsion motor. Design criteria such …

Rescon: Residual Consistency For Real-World Super-Resolution, Erdi̇ Saritaş, Hazim Kemal Ekenel

Turkish Journal of Electrical Engineering and Computer Sciences

Real-world super-resolution is a highly challenging problem in the field of computer vision. Besides enhancing image resolution and improving visual details, information loss due to complex real-world degradations is desired to be restored. One of the primary hardness of this problem is finding sufficiently large paired datasets for training. Researchers have developed techniques that generate synthetic low-resolution pairs using high-resolution images with a generative adversarial network-based degradation generator to address this issue. In these approaches, the degradation generator is trained by utilizing real-world low-resolution images as the target domain, generating a degraded low-resolution counterpart of the high-resolution input. However, in …

“Silent Is Not Actually Silent”: An Investigation Of Toxicity On Bug Report Discussion, Mia Mohammad Imran, Jaydeb Sarker

Computer Science Faculty Research & Creative Works

Toxicity in bug report discussions poses significant challenges to the collaborative dynamics of open-source software development. Bug reports are crucial for identifying and resolving defects, yet their inherently problem-focused nature and emotionally charged context make them susceptible to toxic interactions. This study explores toxicity in GitHub bug reports through a qualitative analysis of 203 bug threads, including 81 toxic ones. Our findings reveal that toxicity frequently arises from misaligned perceptions of bug severity and priority, unresolved frustrations with tools, and lapses in professional communication. These toxic interactions not only derail productive discussions but also reduce the likelihood of actionable outcomes, …

Llput: Investigating Large Language Models For Bug Report-Based Input Generation, Alif Al Hasan, Subarna Saha, Mia Mohammad Imran, Tarannum Shaila Zaman

Computer Science Faculty Research & Creative Works

Failure-inducing inputs play a crucial role in diagnosing and analyzing software bugs. Bug reports typically contain these inputs, which developers extract to facilitate debugging. Since bug reports are written in natural language, prior research has leveraged various Natural Language Processing (NLP) techniques for automated input extraction. With the advent of Large Language Models (LLMs), an important research question arises: how effectively can generative LLMs extract failure-inducing inputs from bug reports? In this paper, we propose LLPut, a technique to empirically evaluate the performance of three open-source generative LLMs-LLaMA, Qwen, and Qwen-Coder-in extracting relevant inputs from bug reports. We conduct an …

Secure Frameworks For User Motion Data In Virtual Reality, Jayasri Sai Nikitha Guthula

Theses and Dissertations

Virtual Reality is an innovative technology transforming industries such as gaming, healthcare, and remote collaboration. The increasing deployment of these systems results in the continuous collection of telemetry data, including motion patterns, hand gestures, and spatial interactions. This data is valuable for enhancing user experiences and optimizing system performance. However, it also introduces significant privacy risks. Unlike traditional digital footprints, motion data captures fine-grained physical behaviors that can be linked to individual users, making anonymization ineffective in preventing re-identification.This research introduces secure frameworks for user motion data in virtual reality, each proposed framework addressing privacy preservation from a different angle. …

Magnetic Macro Pendulum Design And Real-Time Control Application: Simulation And Experiment, Hüseyi̇n Yildiz, Serdar Yilmaz, Yasemi̇n Poyraz Koçak, Erol Uzal

Turkish Journal of Electrical Engineering and Computer Sciences

Over the last decade, the number of studies in the field of magnetic micro robots has significantly increased due to expectations of performing microsurgery, drug delivery, and similar medical procedures. Magnetic micro robots have advantages over other types of micro robots in terms of having independent designs for rotor and stator structures. Magnetic micro robots can be controlled by magnetic fields and can be programmed to move in certain directions and to perform various functions. This paper implements the computer-aided real-time control of a single-arm micro-pendulum structure to (eventually) perform cell manipulation tasks. The mechanical structure, mathematical model, control circuit …

Urban Landscape Recovery And Lulc Analysis: A Deep Learning Approach To Post-Extreme Rainfall Impacts In Dubai, Xin Hong

All Works

From April 14 to 18, 2024, the United Arab Emirates (UAE) experienced its heaviest rainfall in 75 years, resulting in widespread flooding across multiple emirates, including Dubai. This study utilizes high-resolution PlanetScope imagery and a U-Net deep learning model to assess the flood impact and analyze post-rainfall recovery patterns in Dubai’s urban landscape. By integrating Sentinel-2derived land use and land cover (LULC) data to refine the training dataset, a high-accuracy U-Net model was developed through transfer learning that effectively classified pre- and post-rainfall LULC. Post-rainfall LULC change detections indicate that 23.8 km² of land was flooded, which is equivalent …

Combination Of Irreversible Electroporation And Clostridium Novyi-Nt Bacterial Therapy For Colorectal Liver Metastasis, Zigeng Zhang, Guangbo Yu, Qiaoming Hou, Farideh Amirrad, Sha Webster, Surya M. Nauli, Jianhua Yu, Vahid Yaghmai, Aydin Eresen, Zhuoli Zhang

Pharmacy Faculty Articles and Research

Colorectal liver metastasis (CRLM) poses a significant challenge in oncology due to its high incidence and poor prognosis in unresectable cases. Current treatments, including surgical resection, systemic chemotherapy, and liver-directed therapies, often fail to effectively target hypoxic tumor regions, which are inherently more resistant to these interventions. This review examines the potential of a novel therapeutic strategy combining irreversible electroporation (IRE) ablation and Clostridium novyi-nontoxic (C. novyi-NT) bacterial therapy. IRE is a non-thermal tumor ablation technique that uses high-voltage electric pulses to create permanent nanopores in cell membranes, leading to cell death while preserving surrounding structures, and …

Multilingual Cyber Threat Intelligence Feeds Preprocessing For Threat Intelligence Event Extraction: A Systematic Literature Review, Jamal H. Al-Yasiri, Mohamad Fadli Bin Zolkipli, Nik Fatinah N. Mohd Farid

Karbala International Journal of Modern Science

In cyber threat intelligence (CTI), information security specialists face overwhelming data flows from multiple sources, including hacker forums, dark web markets, and social media. These diverse and multilingual information streams require extensive analysis and processing. However, the current state of CTI faces several challenges, such as reliance on manual annotation and evaluation, as well as limited support for non-English languages, which hinders advanced threat detection and comprehensive analysis. This systematic literature review proposes a conceptual framework designed to overcome existing state-of-the-art limitations. It evaluates recent advancements in CTI methodologies by following PRISMA guidelines and analyzing selected studies from reputable sources, …

More Everything Forever: Ai Overlords, Space Empires, And Silicon Valley’S Crusade To Control The Fate Of Humanity, Joseph Kirby

Consensus

Becker, A. (2025). More everything forever : AI overlords, space empires, and Silicon Valley’s crusade to control the fate of humanity. Basic Books. ISBN: 9781541619593

Improving Large Language Models’ Summarization Accuracy By Adding Highlights To Discharge Notes: Comparative Evaluation, Mahshad Koohi Habibi Dehkordi, Yehoshua Perl, Fadi P. Deek, Zhe He, Vipina K. Keloth, Hao Liu, Gai Elhanan, Andrew J. Einstein

School of Computing Faculty Scholarship and Creative Works

Background: The American Medical Association recommends that electronic health record (EHR) notes, often dense and written in nuanced language, be made readable for patients and laypeople, a practice we refer to as the simplification of discharge notes. Our approach to achieving the simplification of discharge notes involves a process of incremental simplification steps to achieve the ideal note. In this paper, we present the first step of this process. Large language models (LLMs) have demonstrated considerable success in text summarization. Such LLM summaries represent the content of EHR notes in an easier-to-read language. However, LLM summaries can also introduce inaccuracies. …

Coli@Fire2024: Findings Of Word-Level Code-Mixed Language Identification In Dravidian Languages, Asha Hegde, Fazlourrahman Balouchzahi, Sabur Butt, Sharal Coelho, Kavya G, Harshitha S. Kumar, Sonith D, Shashirekha H. L., Ameeta Agrawal

Computer Science Faculty Publications and Presentations

Code-mixing, a linguistic phenomenon where multiple languages are blended within a single text, has become increasingly prevalent in multilingual societies, particularly in digital communication. The CoLI-Dravidian shared task, organized as part of Forum for Information Retrieval and Evaluation (FIRE) 2024, aimed to address these challenges by inviting researchers to develop models capable of classifying words in code-mixed texts involving Dravidian languages — Tamil, Kannada, Malayalam, and Tulu - interwoven with English. The task presents significant challenges due to the complexity of linguistic structures, mixed-language tokens, and dialectal variations, especially in low-resource languages like those in the Dravidian family. The participating …

Assessing The Adversarial Robustness Of Multimodal Medical Ai Systems: Insights Into Vulnerabilities And Modality Interactions, Ekaterina Mozhegova, Asad Masood Khattak, Adil Khan, Roman Garaev, Bader Rasheed, Muhammad Shahid Anwar

All Works

The emergence of both task-specific single-modality models and general-purpose multimodal large models presents new opportunities, but also introduces challenges, particularly regarding adversarial attacks. In high-stakes domains like healthcare, these attacks can severely undermine model reliability and their applicability in real-world scenarios, highlighting the critical need for research focused on adversarial robustness. This study investigates the behavior of multimodal models under various adversarial attack scenarios. We conducted experiments involving two modalities: images and texts. Our findings indicate that multimodal models exhibit enhanced resilience against adversarial attacks compared to their single-modality counterparts. This supports our hypothesis that the integration of multiple modalities …

Antibacterial Potential Of Tapanuli Orangutan (Pongo Tapanuliensis) Food In Batang Toru Forest Against Escherichia Coli And Salmonella Typhi, Herna Febrianty Sianipar, Wahyu Widoretno, Luchman Hakim, Rezi Rahmi Amolia, Fatchiyah Fatchiyah

Karbala International Journal of Modern Science

Diarrhea is a common disease affecting orangutans, primarily caused by Escherichia coli and Salmonella typhi bacteria. To treat this disease, antibacterial food sources are essential as therapeutic agents for orangutans. The fruits consumed by Tapanuli orangutans include Campnosperma auriculatum, Agathis borneensis, Artocarpus heterophyllus, Castanopsis argantea, and Aglaia tomentosa. This study aims to examine the amino acid and phytochemical components with potential antibacterial properties in these five fruit species and their inhibitory effects on E. coli and S. typhi growth through cell lysis, observed using a Scanning Electron Microscope (SEM). The samples were tested for amino acids, phytochemicals, vitamin C content, …

Multiscale Modeling And Dynamic Mutational Profiling Of Binding Energetics And Immune Escape For Class I Antibodies With Sars-Cov-2 Spike Protein: Dissecting Mechanisms Of High Resistance To Viral Escape Against Emerging Variants, Mohammed Alshahrani, Vedant Parikh, Brandon Foley, Gennady M. Verkhivker

Mathematics, Physics, and Computer Science Faculty Articles and Research

The rapid evolution of SARS-CoV-2 has underscored the need for a detailed understanding of antibody binding mechanisms to combat immune evasion by emerging variants. In this study, we investigated the interactions between Class I neutralizing antibodies—BD55-1205, BD-604, OMI-42, P5S-1H1, and P5S-2B10—and the receptor-binding domain (RBD) of the SARS-CoV-2 spike protein using multiscale modeling, which combined molecular simulations with the ensemble-based mutational scanning of the binding interfaces and binding free energy computations. A central theme emerging from this work is that the unique binding strength and resilience to immune escape of the BD55-1205 antibody are determined by leveraging a broad epitope …