Computer Sciences Commons^™

The Discrete-Event Modeling Of Administrative Claims (Demac) System: Dynamically Modeling The U.S. Healthcare Delivery System With Medicare Claims Data To Improve End-Of-Life Care, Rachael Chacko

Dartmouth College Undergraduate Theses

The shift of the U.S. healthcare delivery system from the treatment of acute conditions to chronic diseases requires a new method of healthcare system analysis to properly assess end- of-life (EOL) quality throughout the country. In this paper, we propose the Discrete-Event Modeling of Administrative Claims (DEMAC) system, which relies on a hetero-functional graph theory and discrete event-driven framework to dynamically model EOL care on multiple levels. The heat map visualizations produced by the DEMAC system enable the elucidation of not only patient-specific EOL care but also broader treatment patterns among providers and hospitals. As a whole, the DEMAC system …

Exploring The Long Tail, Joseph H. Hajjar

Dartmouth College Undergraduate Theses

The migration of datasets online has created a near-infinite inventory for big name retailers such as Amazon and Netflix, giving rise to recommendation systems to assist users in navigating the massive catalog. This has also allowed for the possibility of retailers storing much less popular, uncommon items which would not appear in a more traditional brick-and-mortar setting due to the cost of storage. Nevertheless, previous work has highlighted the profit potential which lies in the so-called "long tail'' of niche, unpopular items. Unfortunately, due to the limited amount of data in this subset of the inventory, recommendation systems often struggle …

Object Manipulation With Modular Planar Tensegrity Robots, Maxine Perroni-Scharf

Dartmouth College Undergraduate Theses

This thesis explores the creation of a novel two-dimensional tensegrity-based mod- ular system. When individual planar modules are linked together, they form a larger tensegrity robot that can be used to achieve non-prehensile manipulation. The first half of this dissertation focuses on the study of preexisting types of tensegrity mod- ules and proposes different possible structures and arrangements of modules. The second half describes the construction and actuation of a modular 2D robot com- posed of planar three-bar tensegrity structures. We conclude that tensegrity modules are suitably adapted to object manipulation and propose a future extension of the modular 2D …

The R Journal (June 2021) 13(1): Complete Issue, The R Foundation

The R Journal

Editorial, Dianne Cook

Contributed Research Articles

SEEDCCA: An Integrated R-Package for Canonical Correlation Analysis and Partial Least Squares, Bo-Young Kim, Yunju Im, and Jae Keun Yoo

npcure: An R Package for Nonparametric Inference in Mixture Cure Models, Ana López-Cheda, M. Amalia Jácome, and Ignacio López-de-Ullibarri

A Method for Deriving Information from Running R Code, Mark P. J. van der Loo

JMcmprsk: An R Package for Joint Modelling of Longitudinal and Survival Data with Competing Risks, Hong Wang, Ning Li, Shanpeng Li, and Gang Li

Wide-to-tall Data Reshaping Using Regular Expressions and the nc Package, Toby Dylan Hocking

Linear Regression with …

Learning Medical Materials From Radiography Images, Carson Molder, Benjamin Lowe, Justin Zhan

Computer Science and Computer Engineering Faculty Publications and Presentations

Deep learning models have been shown to be effective for material analysis, a subfield of computer vision, on natural images. In medicine, deep learning systems have been shown to more accurately analyze radiography images than algorithmic approaches and even experts. However, one major roadblock to applying deep learning-based material analysis on radiography images is a lack of material annotations accompanying image sets. To solve this, we first introduce an automated procedure to augment annotated radiography images into a set of material samples. Next, using a novel Siamese neural network that compares material sample pairs, called D-CNN, we demonstrate how to …

Capstone Case Study Guide Mapfre, Apoorva Arbooj, Ahamad Waqas, K C Prabhat, Manju Jayam, Rashmi Sakleshpur Rajashekar

School of Professional Studies

Mapfre is a Top-Notch insurer and a competitive and fast-evolving insurance company. Clark team will help Mapfre to organize to secure systems availability and resilience to support the business process. Assist and recommend the IT team for further analysis and identify data, trends, and patterns and come up with to improve the services

Data Integrity Preservation Schemes In Smart Healthcare Systems That Use Fog Computing Distribution, Abdulwahab Fahad S. Alazeb, Brajendra Panda, Sultan Ahmed A Almakdi, Mohammed Saleh H. Alshehri

Computer Science and Computer Engineering Faculty Publications and Presentations

The volume of data generated worldwide is rapidly growing. Cloud computing, fog computing, and the Internet of things (IoT) technologies have been adapted to compute and process this high data volume. In coming years information technology will enable extensive developments in the field of healthcare and offer health care providers and patients broadened opportunities to enhance their healthcare experiences and services owing to heightened availability and enriched services through real-time data exchange. As promising as these technological innovations are, security issues such as data integrity and data consistency remain widely unaddressed. Therefore, it is important to engineer a solution to …

Interpreting Attention-Based Models For Natural Language Processing, Steven J. Signorelli Jr

Dartmouth College Undergraduate Theses

Large pre-trained language models (PLMs) such as BERT and XLNet have revolutionized the field of natural language processing (NLP). The interesting thing is that they are pre- trained through unsupervised tasks, so there is a natural curiosity as to what linguistic knowledge these models have learned from only unlabeled data. Fortunately, these models’ architectures are based on self-attention mechanisms, which are naturally interpretable. As such, there is a growing body of work that uses attention to gain insight as to what linguistic knowledge is possessed by these models. Most attention-focused studies use BERT as their subject, and consequently the field …

Why Dilated Convolutional Neural Networks: A Proof Of Their Optimality, Jonatan Contreras, Martine Ceberio, Vladik Kreinovich

Departmental Technical Reports (CS)

One of the most effective image processing techniques is the use of convolutional neural networks that use convolutional layers. In each such layer, the value of the output at each point is a combination of input data corresponding to several neighboring points. To improve the accuracy, researchers have developed a version of this technique, in which only data from some of the neighboring points is processed. It turns out that the most efficient case -- called dilated convolution -- is when we select the neighboring points whose differences in both coordinates are divisible by some constant l. In this paper, …

Distributing Participation In Design: Addressing Challenges Of A Global Pandemic, Jerry Alan Fails

Computer Science Faculty Publications and Presentations

Participatory Design (PD) – whose inclusive benefits are broadly recognised in design – can be very challenging, especially when involving children. The recent COVID-19 pandemic has given rise to further barriers to PD with such groups. One key barrier is the advent of social distancing and government-imposed social restrictions due to the additional risks posed for e.g. children and families vulnerable to COVID-19. This disrupts traditional in-person PD (which involves close socio-emotional and often physical collaboration between participants and researchers). However, alongside such barriers, we have identified opportunities for new and augmented approaches to PD across distributed geographies, backgrounds, ages …

How Social Media And Embedded Recommender Algorithm Fostered Political Issues, Yan Shi

School of Professional Studies

Social media plays a significant role in social communication and interaction, connecting people from different continents and facilitating information flaws worldwide. Meanwhile, along with the evolution of embedded recommender algorithms that clustering people with similar demographic features, social media has become the most important means of communication for modern society. However, the prosper of interconnecting platforms also have potential flows alongside. One of the major issues is the unexpected political consequence. This paper delivers the first comprehensive analysis of the political impacts posed by social media and embedded recommending algorithms. The article identifies three major political concerns through literature review, …

Promoting And Teaching Responsible Leadership In Software Engineering, Devender Goyal, Luiz Fernando Capretz

Electrical and Computer Engineering Publications

As software and computer technology is becoming more prominent and pervasive in all spheres of life, many researchers and industry folks are realizing the importance of teaching soft skills and values to CS and SE students. Many researchers and leaders, from both academic and non-academic world, are also calling for software researchers and practitioners to seriously consider human values, like respect, integrity, compassion, justice, and honesty when building software, both for greater social good and also for financial considerations. In this paper, we propose and wish to promote teaching soft skills, values, and responsibilities to students, which we term as …

How General Is Fuzzy Decision Making?, Olga Kosheleva, Vladik Kreinovich

Departmental Technical Reports (CS)

In many practical situations, users describe their preferences in imprecise (fuzzy) terms. In such situations, fuzzy techniques are a natural way to describe these preferences in precise terms.

Of course, this description is only an approximation to the ideal decision making that a person would perform if we took time to elicit his/her exact preferences. How accurate is this approximation? When can fuzzy decision making -- potentially -- describe the exact decision making, and when there is a limit to the accuracy of fuzzy approximations?

In this paper, we show that decision making can be precisely described in fuzzy terms …

Green Computing: Three Examples Of How Non-Trivial Mathematical Analysis Can Help, Olga Kosheleva, Vladik Kreinovich

Departmental Technical Reports (CS)

Environment-related problems are extremely important for mankind, the fate of humanity itself depends on our ability to solve these problems. These problems are complex, we cannot solve them without using powerful computers. Thus, in the environmental research, environment-related computing is one of the main computing-related research directions. Another direction is related to the fact that computing itself can be (and currently is) harmful for the environment. How to make computing more environment-friendly, how to move towards green computing -- this is the second important direction. A third direction is motivated by the very complexity of environmental systems: it is difficult …

Is It Fair That Advanced Workers Get Paid Disproportionally More: Economic Analysis, Olga Kosheleva, Sean R. Aguilar

Departmental Technical Reports (CS)

On the one hand, everyone agrees that economics should be fair, that workers should get equal pay for equal work. Any instance of unfairness causes a strong disagreement. On the other hand, in many companies, advanced workers -- who produce more than others -- get paid dispropotionally more for their work, and this does not seem to cause any negative feelings. In this paper, we analyze this situation from the economic viewpoint. We show that from this viewpoint, additional payments for advanced workers indeed make economic sense, benefit everyone, and thus -- in contrast to the naive literal interpretation of …

M^3, Catherine Mingmin Wei, Syrsha Anne Harvey

Computer Science and Software Engineering

M^3 aims to raise students' interest in physics through an interactive and fun video game. Originally planned as a segment in the Cal Poly SLO Seeds in STEM workshop, M^3 is designed with middle and high school students as the intended audience.

Pier Ocean Pier, Brandon J. Nowak

Computer Engineering

Pier Ocean Peer is a weatherproof box containing a Jetson Nano, connected to a cell modem and camera, and powered by a Lithium Iron Phosphate battery charged by a 50W solar panel. This system can currently provide photos to monitor the harbor seal population that likes to haul out at the base of the Cal Poly Pier, but more importantly it provides a platform for future expansion by other students either though adding new sensors directly to the Jetson Nano or by connecting to the jetson nano remotely through a wireless protocol of their choice.

Analyzing Dependence Between Point Processes In Time Using Indtestpp, Ana C. Cebrián, Jesús Asín

The R Journal

The need to analyze the dependence between two or more point processes in time appears in many modeling problems related to the occurrence of events, such as the occurrence of climate events at different spatial locations or synchrony detection in spike train analysis. The package IndTestPP provides a general framework for all the steps in this type of analysis, and one of its main features is the implementation of three families of tests to study independence given the intensities of the processes, which are not only useful to assess independence but also to identify factors causing dependence. The package also …

Distr6: R6 Object-Oriented Probability Distributions Interface In R, Raphael Sonabend, Franz J. Király

The R Journal

distr6 is an object-oriented (OO) probability distributions interface leveraging the extensibility and scalability of R6 and the speed and efficiency of Rcpp. Over 50 probability distributions are currently implemented in the package with ‘core’ methods, including density, distribution, and generating functions, and more ‘exotic’ ones, including hazards and distribution function anti-derivatives. In addition to simple distributions, distr6 supports compositions such as truncation, mixtures, and product distributions. This paper presents the core functionality of the package and demonstrates examples for key use-cases. In addition, this paper provides a critical review of the object-oriented programming paradigms in R and describes some …

Krippendorffsalpha: An R Package For Measuring Agreement Using Krippendorff's Alpha Coefficient, John Hughes

The R Journal

R package krippendorffsalpha provides tools for measuring agreement using Krippendorff’s α coefficient, a well-known nonparametric measure of agreement (also called inter-rater reliability and various other names). This article first develops Krippendorff’s α in a natural way and situates α among statistical procedures. Then, the usage of package krippendorffsalpha is illustrated via analyses of two datasets, the latter of which was collected during an imaging study of hip cartilage. The package permits users to apply the α methodology using built-in distance functions for the nominal, ordinal, interval, or ratio levels of measurement. User-defined distance functions are also supported. The fitting function …

The R Package Smicd: Statistical Methods For Interval-Censored Data, Paul Walter

The R Journal

The package allows the use of two new statistical methods for the analysis of intervalcensored data: 1) direct estimation/prediction of statistical indicators and 2) linear (mixed) regression analysis. Direct estimation of statistical indicators, for instance, poverty and inequality indicators, is facilitated by a non parametric kernel density algorithm. The algorithm is able to account for weights in the estimation of statistical indicators. The standard errors of the statistical indicators are estimated with a non parametric bootstrap. Furthermore, the package offers statistical methods for the estimation of linear and linear mixed regression models with an interval-censored dependent variable, particularly random slope …

Finding Optimal Normalizing Transformations Via Bestnormalize, Ryan A. Peterson

The R Journal

The bestNormalize R package was designed to help users find a transformation that can effectively normalize a vector regardless of its actual distribution. Each of the many normalization techniques that have been developed has its own strengths and weaknesses, and deciding which to use until data are fully observed is difficult or impossible. This package facilitates choosing between a range of possible transformations and will automatically return the best one, i.e., the one that makes data look the most normal. To evaluate and compare the normalization efficacy across a suite of possible transformations, we developed a statistic based on a …

Robustness In Network (Robin): An R Package For Comparison And Validation Of Communities, Valeria Policastro, Dario Righelli, Annamaria Carissimo, Luisa Cutillo, Italia De Feis

The R Journal

In network analysis, many community detection algorithms have been developed. However, their implementation leaves unaddressed the question of the statistical validation of the results. Here, we present robin (ROBustness In Network), an R package to assess the robustness of the community structure of a network found by one or more methods to give indications about their reliability. The procedure initially detects if the community structure found by a set of algorithms is statistically significant and then compares two selected detection algorithms on the same graph to choose the one that better fits the network of interest. We demonstrate the use …

Indexnumber: An R Package For Measuring The Evolution Of Magnitudes, Alejandro Saavedra-Nieves, Paula Saavedra-Nieves

The R Journal

Index numbers are descriptive statistical measures useful in economic settings for comparing simple and complex magnitudes registered, usually in two time periods. Although this theory has a large history, it still plays an important role in modern today’s societies where big amounts of economic data are available and need to be analyzed. After a detailed revision on classical index numbers in literature, this paper is focused on the description of the R package IndexNumber with strong capabilities for calculating them. Two of the four real data sets contained in this library are used for illustrating the determination of the index …

Pdynmc: A Package For Estimating Linear Dynamic Panel Data Models Based On Nonlinear Moment Conditions, Markus Fritsch, Andrew Adrian Yu Pua, Joachim Schnurbus

The R Journal

This paper introduces pdynmc, an R package that provides users sufficient flexibility and precise control over the estimation and inference in linear dynamic panel data models. The package primarily allows for the inclusion of nonlinear moment conditions and the use of iterated GMM; additionally, visualizations for data structure and estimation results are provided. The current implementation reflects recent developments in literature, uses sensible argument defaults, and aligns commercial and noncommercial estimation commands. Since the understanding of the model assumptions is vital for setting up plausible estimation routines, we provide a broad introduction of linear dynamic panel data models directed towards …

Benchmarking R Packages For Calculation Of Persistent Homology, Eashwar V. Somasundaram, Shael E. Brown, Adam Litzler, Jacob G. Scott, Raoul R. Wadhwa

The R Journal

Several persistent homology software libraries have been implemented in R. Specifically, the Dionysus, GUDHI, and Ripser libraries have been wrapped by the TDA and TDAstats CRAN packages. These software represent powerful analysis tools that are computationally expensive and, to our knowledge, have not been formally benchmarked. Here, we analyze runtime and memory growth for the 2 R packages and the 3 underlying libraries. We find that datasets with less than 3 dimensions can be evaluated with persistent homology fastest by the GUDHI library in the TDA package. For higher-dimensional datasets, the Ripser library in the TDAstats package is the fastest. …

Unidimensional And Multidimensional Methods For Recurrence Quantification Analysis With Crqa, Moreno I. Coco, Dan Mønster, Giuseppe Leonardi, Rick Dale, Sebastian Wallot

The R Journal

Recurrence quantification analysis is a widely used method for characterizing patterns in time series. This article presents a comprehensive survey for conducting a wide range of recurrence-based analyses to quantify the dynamical structure of single and multivariate time series and capture coupling properties underlying leader-follower relationships. The basics of recurrence quantification analysis (RQA) and all its variants are formally introduced step-by-step from the simplest auto-recurrence to the most advanced multivariate case. Importantly, we show how such RQA methods can be deployed under a single computational framework in R using a substantially renewed version of our crqa 2.0 package. This package …

The Bdpar Package: Big Data Pipelining Architecture For R, Miguel Ferreiro-Díaz, Tomás R. Cotos-Yáñez, José R. Méndez, David Ruano-Ordás

The R Journal

In the last years, big data has become a useful paradigm for taking advantage of multiple sources to find relevant knowledge in real domains (such as the design of personalized marketing campaigns or helping to palliate the effects of several fatal diseases). Big data programming tools and methods have evolved over time from a MapReduce to a pipeline-based archetype. Concretely the use of pipelining schemes has become the most reliable way of processing and analyzing large amounts of data. To this end, this work introduces bdpar, a new highly customizable pipeline-based framework (using the OOP paradigm provided by R6 …

Exprior: An R Package For The Formulation Of Ex-Situ Priors, Falk Heße, Karina Cucchi, Nura Kawa, Yoram Rubin

The R Journal

The exPrior package implements a procedure for formulating informative priors of geostatistical properties for a target field site, called ex-situ priors and introduced in Cucchi et al. (2019). The procedure uses a Bayesian hierarchical model to assimilate multiple types of data coming from multiple sites considered as similar to the target site. This prior summarizes the information contained in the data in the form of a probability density function that can be used to better inform further geostatistical investigations at the site. The formulation of the prior uses ex-situ data, where the data set can either be gathered by the …

Linear Regression With Stationary Errors: The R Package Slm, Emmanuel Caron, Jérôme Dedecker, Bertrand Michel

The R Journal

This paper introduces the R package slm, which stands for Stationary Linear Models. The package contains a set of statistical procedures for linear regression in the general context where the error process is strictly stationary with a short memory. We work in the setting of Hannan (1973), who proved the asymptotic normality of the (normalized) least squares estimators (LSE) under very mild conditions on the error process. We propose different ways to estimate the asymptotic covariance matrix of the LSE and then to correct the type I error rates of the usual tests on the parameters (as well as confidence …