Computer Sciences Commons^™

Predicting Water Quality Using Quantum Machine Learning: The Case Of The Umgeni Catchment (U20a) Study Region, Jamal Al-Karaki, Muhammad Al Zafar Khan, Amjad Gawanmeh, Marwan Omar

All Works

The assessment of water quality has become increasingly vital for maintaining the ecological balance and ensuring public safety across global water systems. This study examines the application of Quantum Machine Learning (QML) techniques in a real-world setting to predict water quality in the U20A region of the Umgeni Catchment, Durban, South Africa. We implemented the Quantum Support Vector Classifier (QSVC) and Quantum Neural Network (QNN) on a field-collected dataset. Our results demonstrate that the QSVC is more practical to implement and yields superior performance, achieving 75 % accuracy with polynomial and radial basis function kernels. In contrast, the QNN encountered …

Cellscout: Visual Analytics For Mining Biomarkers In Cell State Discovery, Rui Sheng, Zelin Zang, Jiachen Wang, Yan Luo, Zixin Chen, Yan Zhou, Shaolun Ruan, Huamin Qu

Research Collection School Of Computing and Information Systems

Cell state discovery is crucial for understanding biological systems and enhancing medical outcomes. A key aspect of this process is identifying distinct biomarkers that define specific cell states. However, difficulties arise from the co-discovery process of cell states and biomarkers: biologists often use dimensionality reduction to visualize cells in a two-dimensional space. Then they usually interpret visually clustered cells as distinct states, from which they seek to identify unique biomarkers. However, this assumption is often this assumption often fails to hold due to internal inconsistencies in a cluster, making the process trial-and-error and highly uncertain. Therefore, biologists urgently need effective …

Xgboost-Powered Predictive Analytics For Early Identification Of Thermal Runaway In Lithium-Ion Batteries, Isslam Alhasan, Mohd H.S. Alrashdan

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Lithium-ion batteries are pivotal in powering modern technology, from electric vehicles to portable electronics. However, their safety is challenged by the risk of thermal runaway, a critical failure mode leading to catastrophic consequences such as fires and explosions. This study presents a machine learning framework for the early detection of thermal runaway events using sensor data from over 210 open-source battery tests. The framework utilizes voltage, temperature, and force measurements from experimental mechanical indentation tests, with force data providing additional predictive value beyond standard BMS sensors. Key features such as the rate of temperature change and voltage change were engineered …

Mitigating Malware Prevalence In Networks With Arbitrary Topologies: A Flip-It Cyber Game Approach Integrated With Epidemic Modeling, Mousa Tayseer Jafar, Lu Xing Yang, Gang Li, Robin Doss, Kon Mouzakis, Rajesh Vasa, Helge Janicke, Ahmed Ibrahim, Ahmed Mohsin, Iqbal H. Sarker, Kristen Moore, Seyit Camtepe, Diksha Goel

Research outputs 2022 to 2026

Cyber threats have evolved in complexity, aiming at a wide range of sectors using advanced methods and tools. This evolving threat landscape challenges existing cybersecurity frameworks, many of which lack the adaptability to counteract the complex tactics of sophisticated adversaries. Developing robust cyber defense strategies requires simulating dynamic interactions between attackers and defenders across high, moderate, and low-impact scenarios. The Flip-It cyber game serves as an intelligent framework for simulating these interactions, enabling the analysis of adaptive strategies in cybersecurity. This paper aims to address the problem of mitigating malware prevalence with full consideration of attack/defense capabilities in arbitrary network …

Less Is More: Docstring Compression In Code Generation, Guang Yang, Yu Zhou, Wei Cheng, Xiangyu Zhang, Xiang Chen, Terry Yue Zhuo, Xin Zhou, Ke Liu, David Lo, Taolue Chen

Research Collection School Of Computing and Information Systems

The widespread use of Large Language Models (LLMs) in software engineering has intensified the need for improved model and resource efficiency. In particular, for neural code generation, LLMs are used to translate function/method signature and DocString to executable code. DocStrings, which capture user requirements for the code and are typically used as the prompt for LLMs, often contain redundant information. Recent advancements in prompt compression have shown promising results in Natural Language Processing (NLP), but their applicability to code generation remains uncertain. Our empirical study shows that the state-ofthe-art prompt compression methods achieve only about 10% reduction, as further reductions …

Lagrangian Motion Fields For Long-Term Motion Generation, Yifei Yang, Zikai Huang, Chenshu Xu, Shengfeng He

Research Collection School Of Computing and Information Systems

Long-term motion generation is a challenging task that requires producing coherent and realistic sequences over extended durations. Current methods primarily rely on framewise motion representations, which capture only static spatial details and overlook temporal dynamics. This approach leads to significant redundancy across the temporal dimension, complicating the generation of effective long-term motion. To overcome these limitations, we introduce the novel concept of Lagrangian Motion Fields, specifically designed for long-term motion generation. By treating each joint as a Lagrangian particle with uniform velocity over short intervals, our approach condenses motion representations into a series of "supermotions" (analogous to superpixels). This method …

Prompt Tuning Without Labeled Samples For Zero-Shot Node Classification In Text-Attributed Graphs, Sethupathy Parameswaran, Suresh Sundaram, Yuan Fang

Research Collection School Of Computing and Information Systems

Node classification is a fundamental problem in information retrieval with many real-world applications, such as community detection in social networks, grouping articles published online and product categorization in e-commerce. Zero-shot node classification in text-attributed graphs (TAGs) presents a significant challenge, particularly due to the absence of labeled data. In this paper, we propose a novel Zero-shot Prompt Tuning (ZPT) framework to address this problem by leveraging a Universal Bimodal Conditional Generator (UBCG). Our approach begins with pre-training a graph-language model to capture both the graph structure and the associated textual descriptions of each node. Following this, a conditional generative model …

Obstructive Sleep Apnea Prediction: A Comprehensive Review And Comparative Study, Thi Khanh Chi Huynh, Amonae Dabbs-Brown, Anna Jurek-Loughrey, James Mulhall, Tuan Dung Pham, Ngoc Phu Doan, Viet Hung Tran, Zichi Zhang, Xuan Hoang Nguyen, Yimeng An, Peixin Li, Phi Hung Nguyen, Thi Linh Hoang, Xinming Shi, Hans Vandierendonck, Sebastien Bailly, Jean-Louis Pépin, Thai Son Mai

Research Collection School Of Computing and Information Systems

Obstructive Sleep Apnea (OSA) is a highly prevalent sleep disorder linked to considerable public health burdens and comorbidities. However, its heterogeneous presentation and the limited accessibility of traditional diagnostic tools such as polysomnography (PSG) lead to widespread underdiagnosis. As a result, artificial intelligence (AI) approaches, including machine learning (ML) and deep learning (DL) models, have attracted attention as an alternative pathway to detection. This paper first provides a comprehensive review of AI-driven OSA diagnosis, covering different diagnosis problems, input-data types, data biases, pre-processing techniques, and model performance. We then leverage the largest clinical dataset used in OSA prediction to date, …

Vercation: Precise Vulnerable Open-Source Software Version Identification Based On Static Analysis And Llm, Yiran Cheng, Ting Zhang, Lwin Khin Shar, Shouguo Yang, Chaopeng Dong, David Lo, Shichao Lv, Zhiqiang Shi, Limin Sun

Research Collection School Of Computing and Information Systems

Open-source software (OSS) has experienced a surge in popularity, attributed to its collaborative development model and cost-effective nature. However, the adoption of specific software versions in development projects may introduce security risks when these versions bring along vulnerabilities. Current methods of identifying vulnerable versions typically analyze and extract the code features involved in vulnerability patches using static analysis with pre-defined rules. They then use code clone detection to identify the vulnerable versions. These methods are hindered by imprecision due to (1) the exclusion of vulnerability- irrelevant code in the analysis and (2) the inadequacy of code clone detection. This paper …

Exploring Jvm Garbage Collector Testing With Event-Coverage, Kai Zheng, Yingquan Zhao, Junjie Chen, Hanmo You, Haoyu Wang, Haoyu Wang, Tianchang Gao

Research Collection School Of Computing and Information Systems

Garbage Collection (GC) in the Java Virtual Machine (JVM) serves as an automatic memory management mechanism, efficiently reclaiming unused memory space in different production scenarios. To optimize JVM performance, developers typically fine-tune the garbage collector by identifying an optimal set of GC configurations for specific scenarios. Despite the sophisticated design of garbage collectors, they still have the potential for bugs in different settings, and these bugs can result in more severe consequences. Hence, comprehensive testing of these garbage collectors is imperative before their release. Code coverage criteria are typically employed to assess the comprehensiveness of a test suite. However, traditional …

Defending Code Language Models Against Backdoor Attacks With Deceptive Cross-Entropy Loss, Guang Yang, Yu Zhou, Xiangyu Zhang, Xiang Chen, Terry Yue Zhuo, David Lo, Taolue Chen

Research Collection School Of Computing and Information Systems

Code Language Models (CLMs), particularly those leveraging deep learning, have achieved significant success in code intelligence domain. However, the issue of security, particularly backdoor attacks, is often overlooked in this process. The previous research has focused on designing backdoor attacks for CLMs, but effective defenses have not been adequately addressed. In particular, existing defense methods from natural language processing, when directly applied to CLMs, are not effective enough and lack generality, working well in some models and scenarios but failing in others, thus fall short in consistently mitigating backdoor attacks. To bridge this gap, we first confirm the phenomenon of …

Fcghunter: Towards Evaluating Robustness Of Graph-Based Android Malware Detection, Shiwen Song, Xiaofei Xie, Ruitao Feng, Qi Guo, Sen Chen

Research Collection School Of Computing and Information Systems

Graph-based detection methods leveraging Function Call Graph (FCG) have shown promise for Android malware detection (AMD) due to their semantic insights. However, the deployment of malware detectors in dynamic and hostile environments raises significant concerns about their robustness. While recent approaches evaluate the robustness of FCG-based detectors using adversarial attacks, their effectiveness is constrained by the vast perturbation space, particularly across diverse models and features. To address these challenges, we introduce FCGHunter, a novel robustness testing framework for FCG-based AMD systems. Specifically, FCGHunter employs innovative techniques to enhance exploration and exploitation within this huge search space. Initially, it identifies critical …

Light Cone Cancellation For Variational Quantum Eigensolver In Solving Noisy Max-Cut, Xinwei Lee, Xinjian Yan, Ningyi Xie, Yoshiyuki Saito, Leo Kurosawa, Nobuyoshi Asai, Dongsheng Cai, Hoong Chuin Lau

Research Collection School Of Computing and Information Systems

Variational Quantum Eigensolver (VQE) is a quantum-classical hybrid algorithm used to estimate the ground energy of a given Hamiltonian. It consists of a parameterized quantum circuit, which the parameters are optimized using a classical optimizer. With the increasing need in solving large-scale problems in real-world applications, solving those large problems with fewer qubits and fewer gates becomes essential, so that we reduce the simulation difficulty and mitigate the effect of noise in real quantum hardware. In this study, we applied the Light Cone Cancellation (LCC) method to reduce the number of qubits and gates required in a two-local ansatz. LCC …

Removed: When Taxi Drivers Meet Dynamic Pricing: A Lesson From Singapore's Justgrab Program, Shih-Fen Cheng, Wen-Tai Hsu, Jing Li

Research Collection School Of Economics

This paper studies how dynamic pricing influences taxi drivers’ behaviors using a unique event, the inception of the JustGrab program in Singapore in 2017, which introduces dynamic pricing to some, but not all, taxi drivers. This is the first time in history that traditional taxi drivers have access to dynamic pricing. Using data covering the universe of taxi trips before and after the inception of JustGrab, we find that there is spatial reallocation that directs more taxi drivers to the previously less-served areas, that there is also a temporal reallocation that directs more taxi drivers to rush hours, as well …

Learnable Game-Theoretic Policy Optimization For Data-Centric Self-Explanation Rationalization, Yunxiao Zhao, Zhiqiang Wang, Xingtong Yu, Xiaoli Li, Jiye Liang, Ru Li

Research Collection School Of Computing and Information Systems

Rationalization, a data-centric framework, aims to build self-explanatory models to explain the prediction outcome by generating a subset of human-intelligible pieces of the input data. It involves a cooperative game model where a generator generates the most human-intelligible parts of the input (i.e., rationales), followed by a predictor that makes predictions based on these generated rationales. Conventional rationalization methods typically impose constraints via regularization terms to calibrate or penalize undesired generation. However, these methods are suffering from a problem called mode collapse, in which the predictor produces correct predictions yet the generator consistently outputs rationales with collapsed patterns. Moreover, existing …

Mm-Attackg: A Multimodal Approach To Attack Graph Construction With Large Language Models, Yongheng Zhang, Xinyun Zhao, Yunshan Ma, Haokai Ma, Yingxiao Guan, Guozheng Yang, Yuliang Lu, Xiang Wang

Research Collection School Of Computing and Information Systems

Cyber Threat Intelligence (CTI) parsing aims to extract key threat information from massive data, transform it into actionable intelligence, enhance threat detection and defense efficiency, including attack graph construction, intelligence fusion, and indicator extraction. Among these research topics, Attack Graph Construction (AGC) is essential for visualizing and understanding the potential attack paths of threat events from CTI reports. Existing approaches primarily construct the attack graphs purely from the textual data to reveal the logical threat relationships between entities within the attack behavioral sequence. However, they typically overlook the specific threat information inherent in visual modalities, which preserves key threat details …

The Case For Ai Authorship In Copyright Law, Cheng Lim Saw, Duncan Lim

Research Collection Yong Pung How School Of Law

Today, with generative AI, literary and artistic works can be created almost effortlessly. There is at present intense debate as to whether works generated by AI – broadly categorised as “AI-assisted” and “AI-generated” works – ought to attract copyright protection. AI-assisted works are those that involve some degree of human intervention. Where AI-generated works are concerned, however, such works are created autonomously by the AI itself with minimal (de minimis) input from an identifiable human being. Presently, it is generally accepted that AI-generated works do not attract copyright protection for want of a human author. This article examines whether it …

Efficient Function Orchestration For Large Language Models, Xiaoxia Liu, Peng Di, Cong Li, Jun Sun, Jingyi Wang

Research Collection School Of Computing and Information Systems

Function calling is a fundamental capability of today's large language models, but sequential function calling posed efficiency problems. Recent studies have proposed to request function calls with parallelism support in order to alleviate this issue. However, they either delegate the concurrent function calls to users for execution which are conversely executed sequentially, or overlook the relations among various function calls, rending limited efficiency. This paper introduces LLMOrch, an advanced framework for automated, parallel function calling in large language models. The key principle behind LLMOrch is to identify an available processor to execute a function call while preventing any single processor …

Quantum Chebyshev Transform-Based Graph Neural Networks For Financial Fraud Detection, Minrui Xu, Bingyan Guan, Bethel Hui Ting Loke, Paul R. Griffin

Research Collection School Of Computing and Information Systems

Financial fraud detection is a critical challenge requiring accurate identification of anomalous patterns in complex transaction networks. Graph Neural Networks (GNNs) have emerged as powerful tools for fraud detection by capturing relational structures among entities. Meanwhile, quantum computing offers new possibilities to enhance machine learning through high-dimensional Hilbert spaces and parallelism. In this paper, we propose a hybrid classical-quantum model called QCTGNN (Quantum Chebyshev Transform-based Graph Neural Network) for financial fraud detection. The QCTGNN integrates a classical graph neural network component based on Simplified Graph Convolutions (SGConv) with a quantum component that performs a Chebyshev polynomial-based transform via variational quantum …

How Consistent Friendlike Conversation With Ai Companions Influences Our Attitudes And Perceptions Toward Ai: An Exploratory Experiment, Qi Hui Jerlyn Ho, Meilan Hu, Adalia Yin Hui Goh, Emma Jane Pragasam, Andree Hartanto

Research Collection School of Social Sciences

Despite skepticism and distrust in artificial intelligence (AI), it is increasingly integrated into daily life, with its potential benefits drawing interest. Yet little is known about the attitudinal and psychological effects of human–AI interactions, and whether consistent interactions with AI chatbots can change users’ attitudes and perceptions. Our within-subjects experiment (N = 52) investigated how five days of socially oriented, friendlike interactions with an AI chatbot, versus a journaling control, influenced changes in attitudes and perceptions of AI. Participants’ attitudes towards AI, trust, perceived empathy, anthropomorphism, animacy, likeability, perceived intelligence and safety, dependency, and exploratory well-being indicators were recorded. Results …

Evaluation Of Large Language Models As Decision Support Tools For Head And Neck Cancer Management: A Blinded Multidisciplinary Simulation Study, Sholem Hack, Ron J. Karni, Antonino Maniaci, Christopher E. Fundakowski, Luca Castellani, Fabiola Incandela, Remo Accorona, Miguel Mayo-Yanez, Martina Violati, Lorenzo Giannini, Niccolo' Mevio, Alberto Maria Saibene

Department of Otolaryngology - Head and Neck Surgery Faculty Papers

BACKGROUND: The management of head and neck cancer relies on multidisciplinary expertise; however, access to tumor boards remains variable. Large language models (LLMs) may support guideline-based decision-making, although performance in complex oncologic scenarios is not well defined.

METHODS: Fourteen synthetic cases based on real tumor board encounters were evaluated. Five blinded comparator arms produced recommendations: a human expert, Non-RAG-GPT-4, Non-RAG-GPT-5, RAG-GPT-4, and RAG-GPT-5. Eight head and neck oncologic surgeons scored each recommendation for appropriateness, clarity, specificity, and feasibility using 5-point Likert scales. Paired permutation testing and inter-rater reliability were assessed.

RESULTS: LLM outputs showed close alignment with expert recommendations. RAG-based …

Reachability In Interactive Chemical Reaction Networks, Aberto Avila-Jimenez, Bin Fu, Elise Grizzell, Robert Schweller, Tim Wylie

Computer Science Faculty Publications

This paper studies the effects of interactivity on molecular computation, specifically in the Step Chemical Reaction Networks model (Step CRNs), by adding the ability for a user to interact with the system by selecting which species to add at each step, or by having some control over which reactions execute. The two proposed variants are Interactive CRNs and Randomized Interactive CRNs. We show that in Interactive CRNs, even when restricted to void (deletion-only) rules of relatively small size, if a user can decide which species to add at each step based on the configuration, reachability is PSPACE-complete when bounded and …

A Virtual-Reality-Based Dental Simulator For Endodontics With Automated Formative Feedback, Yousef Salah Abo El Ela

Theses and Dissertations

Advancements in virtual reality (VR) and haptic technology are transforming the landscape of medical and dental education, offering new avenues for safe, immersive, and repeatable training experiences. Within dentistry, endodontics presents unique challenges for preclinical education due to anatomical complexity, limited access to extracted teeth, ethical concerns, and the shortcomings of conventional plastic models. Despite endodontics specific plastic teeth being available, they fall short of replicating the hardness of real extracted teeth, are relatively costly compared to generic plastic teeth, and are ultimately a disposable item which makes them inadequate as a sustainable long-term solution. Extracted teeth do a much …

Geometric Modeling Through Multiple Implicit Functions, Yiwen Ju

McKelvey School of Engineering Graduate Student Theses & Dissertations

Implicit representations have become a dominant paradigm in computational settings ranging from learning-based geometry generation to advanced manufacturing. While treating geometry as the level set of a black-box function provides significant modeling flexibility, converting these representations into explicit surface meshes remains a major challenge. Standard volumetric extraction methods are fundamentally designed for smooth manifolds and therefore struggle to capture sharp geometric features such as creases, corners, and non-manifold junctions that are critical for high-fidelity industrial design and engineering tasks. Many of these intricate features arise from modeling multiple implicit functions. Examples include Constructive Solid Geometry (CSG), material interfaces, and more …

A High-Resolution Daily Precipitation Fusion Framework Integrating Radar, Satellite, And Nwp Data Using Machine Learning Over South Korea, Hyoju Park, Hiroyuki Miyazaki, Menas Kafatos, Seung Hee Kim, Yangwon Lee

Institute for ECHO Articles and Research

Accurate precipitation mapping is essential for effective disaster management; however, individual radar, satellite, and numerical weather prediction products often struggle in the topographically complex terrain of South Korea. This study proposes a high-resolution (~500 m) daily precipitation fusion framework that integrates Korea Meteorological Administration (KMA) radar, Global Precipitation Measurement (GPM) Integrated Multi-Satellite Retrievals for GPM (IMERG), and Local Data Assimilation and Prediction System (LDAPS) data. The framework employs a Random Forest model augmented with a monthly Empirical Cumulative Distribution Function (ECDF) correction. Auxiliary predictors are incorporated to enhance physical interpretability and stability, including terrain attributes to represent orographic effects, land-cover …

Use Of Electrocardiograms To Identify Coronary Artery Disease: Cross-Validation Of An Artificial Intelligence Model, Michael Leasure, Indu Poornima, Adam Butchy, Utkars Jain, Devin Vasoya, Michael Warnick, Brent Williams, John Rehder, Prahlad Menon, Veronica A. Covalesky, Gary S. Mintz

Department of Medicine Faculty Papers

BACKGROUND: The current gold standard for the diagnosis of coronary artery disease (CAD) is invasive angiography; however, it is an invasive procedure. Therefore, we developed an artificial intelligence model designed to predict significant CAD from a resting digital 12-lead electrocardiogram (ECG).

OBJECTIVES: This retrospective study assessed the model's ability to predict clinically significant CAD in a patient population presenting for coronary angiography.

METHODS: From 2019 to 2021, 16,476 patients had a resting 12-lead digital ECG recorded within 90 days prior to coronary angiography. The artificial intelligence model was developed using 10-fold cross-validation methodology. Clinically significant disease was defined as angiographic …

Artificial Intelligence In Higher Education, Opportunities, And Challenges: A Review, Sharifa Alblooshi

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Artificial intelligence (AI) is a growing force of change in higher education, providing assistance to students, teachers, and administrators in teaching, learning, and administration. As AI technologies advance rapidly, they present a combination of significant opportunities and complex challenges. In this study, we examine the role of AI in higher education, highlighting both its positive and negative impacts, as well as current policy gaps and issues arising from its deployment. The literature on the topic was reviewed to determine how AI decisively impacts teaching and learning, the role of AI in assessments and academic integrity, as well as ethics, psychological …

From Latent Manifolds To Targeted Molecular Probes: An Interpretable, Kinome-Scale Generative Machine Learning Framework For Family-Based Kinase Ligand Design, Gennady M. Verkhivker, Ryan Kassab, Keerthi Krishnan

Mathematics, Physics, and Computer Science Faculty Articles and Research

Scaffold-aware artificial intelligence (AI) models enable systematic exploration of chemical space conditioned on protein-interacting ligands, yet the representational principles governing their behavior remain poorly understood. The computational representation of structurally complex kinase small molecules remains a formidable challenge due to the high conservation of ATP active site architecture across the kinome and the topological complexity of structural scaffolds in current generative AI frameworks. In this study, we present a diagnostic, modular and chemistry-first generative framework for design of targeted SRC kinase ligands by integrating ChemVAE-based latent space modeling, a chemically interpretable structural similarity metric (Kinase Likelihood Score), Bayesian optimization, and …

Clustering Of Temporal And Visual Data: Recent Advancements, Priyanka Mudgal

Computer Science Faculty Publications and Presentations

Clustering plays a central role in uncovering latent structure within both temporal and visual data. It enables critical insights in various domains including healthcare, finance, surveillance, autonomous systems, and many more. With the growing volume and complexity of time-series and image-based datasets, there is an increasing demand for robust, flexible, and scalable clustering algorithms. Although these modalities differ—time-series being inherently sequential and vision data being spatial—they exhibit common challenges such as high dimensionality, noise, variability in alignment and scale, and the need for interpretable groupings. This survey presents a comprehensive review of recent advancements in clustering methods that are adaptable …

Mapping Post-Rainfall Recovery In Arid Regions Using A Hierarchical U-Net, Xin Hong

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The United Arab Emirates (UAE) experienced an extreme rainfall event between April 15 and 17, 2024, and that resulted in severe flooding in its coastal regions. Dubai was among the most affected regions. This study applies a hierarchical deep learning model on PlanetScope imagery to detect flood inundation, quantify flood extent by land cover, and examine short-term recovery dynamics. While earlier work detailed the methodological development of a hierarchical U-Net model (Hong et al., in press), here we emphasize its application for monitoring resilience trajectories in an arid urban environment. Results show that approximately 22 km² of land was …