Computer Sciences Commons^™

Exploring Neural Network Structure Code Reuse In The Open-Source Community For Improving Maintenance, Xiaoning Ren, Yuekun Wang, Chongyang Liu, Yueming Wu, Qiang Hu, Lijun Zhang, Yinxing Xue

Research Collection School Of Computing and Information Systems

Neural networks (NNs) have rapidly advanced, demonstrating exceptional performance across various fields, leading to a surge in open-source NN projects. The complexity and rapid growth of these projects pose significant challenges for maintenance within the open-source community. Given that NN architecture code is the core asset of NN projects, understanding its reuse in the open-source community is essential for effective maintenance, such as reducing redundancy and identifying potential intellectual property violations. While prior studies have examined code reuse in open-source projects, they have two key limitations: They do not specifically address NN structure code, and they rely on manually selected …

Navigation Beyond Wayfinding: Robots Collaborating With Visually Impaired Users For Environmental Interactions, Shaojun Cai, Nuwan Janaka, Ashwin Ram, Janidu Shehan, Yingjia Wan, Kotaro Hara, David Hsu

Research Collection School Of Computing and Information Systems

Robotic guidance systems have shown promise in supporting blind and visually impaired (BVI) individuals with wayfinding and obstacle avoidance. However, most existing systems assume a clear path and do not support a critical aspect of navigation—environmental interactions that require manipulating objects to enable movement. These interactions are challenging for a human–robot pair because they demand (i) precise localization and manipulation of interaction targets (e.g., pressing elevator buttons) and (ii) dynamic coordination between the user’s and robot’s movements (e.g., pulling out a chair to sit). We present a collaborative human–robot approach that combines our robotic guide dog’s precise sensing and localization …

Compositions Of Variant Experts For Integrating Short-Term And Long-Term Preferences, Dinh Hieu Do, Hady Wirawan Lauw

Research Collection School Of Computing and Information Systems

In the online digital realm, recommendation systems are ubiquitous and play a crucial role in enhancing user experience. These systems leverage user preferences to provide personalized recommendations, thereby helping users navigate through the paradox of choice. This work focuses on personalized sequential recommendation, where the system considers not only a user’s immediate, evolving session context, but also their cumulative historical behavior to provide highly relevant and timely recommendations. Through an empirical study conducted on diverse real-world datasets, we have observed and quantified the existence and impact of both short-term (immediate and transient) and long-term (enduring and stable) preferences on users’ …

A Novel Privacy-Preserving User Information Queries Scheme With Functional Policy, Yuhang Lei, Rui Shi, Yang Yang, Chunjie Cao, Huamin Feng

Research Collection School Of Computing and Information Systems

Privacy-preserving information queries enable a requester to obtain only the value f(x) computed over sensitive data x, while preventing disclosure of the underlying records. Existing approaches typically reveal full data, incur high on-chain overhead, or lack fair and verifiable delivery of function outputs. We propose a general-purpose, blockchain-compatible framework that ensures the requester learns only f(x) with no extra leakage and that the provider receives fair payment. The design integrates Adaptor Signatures (AS) for fair exchange and Inner-Product Functional Encryption (IPFE) for fine-grained function extraction. The framework is domain-agnostic and applicable to privacy-sensitive applications such as medical insurance and financial …

Efficient Active Training For Deep Lidar Odometry, Beibei Zhou, Zhiyuan Zhang, Zhenbo Song, Jianhui Guo, Hui Kong

Research Collection School Of Computing and Information Systems

Robust and efficient deep LiDAR odometry models are crucial for accurate localization and 3D reconstruction, but typically require extensive and diverse training data to adapt to diverse environments, leading to inefficiencies. To tackle this, we introduce an active training framework designed to selectively extract training data from diverse environments, thereby reducing the training load and enhancing model generalization. Our framework is based on two key strategies: Initial Training Set Selection (ITSS) and Active Incremental Selection (AIS). ITSS begins by breaking down motion sequences from general weather into nodes and edges for detailed trajectory analysis, prioritizing diverse sequences to form a …

Identifying And Mitigating Api Misuse In Large Language Models, Terry Yue Zhuo, Junda He, Jiamou Sun, Zhenchang Xing, David Lo, John Grundy, Xiaoning Du

Research Collection School Of Computing and Information Systems

API misuse in code generated by large language models (LLMs) presents a serious and growing challenge in software development. While LLMs demonstrate impressive code generation capabilities, their interactions with complex library APIs are often error-prone, potentially leading to software failures and vulnerabilities. In this paper, we conduct a large-scale study of API misuse patterns in LLM-generated code, analyzing both method selection and parameter usage across Python and Java, using three representative LLMs (StarCoder-7B, Qwen2.5-Coder-7B, and GitHub Copilot). Based on extensive manual annotation of 3,209 method-level and 3,492 parameter-level misuses, we identify and categorize four recurring misuse types by building on …

Using Ensemble Disagreement To Stabilize Conformal Prediction Under Distribution Shift, Patrick D. Murphy

Master's Theses

Semantic segmentation of eelgrass from drone imagery is crucial for coastal habitat monitoring, restoration, and management, as these habitats continue to see rapid changes due to climate change and human influence. However, the reliability of generalizing a deployed classification model relies on both high-accuracy segmentation as well as robust uncertainty quantification that holds up when conditions change over years or locations. Conformal prediction (CP) is a method that converts a classifier's output into prediction sets with a guaranteed average coverage level for in-distribution data. However, the “vanilla” conformal score can often under-cover in hard or out-of-distribution (OOD) regions under drift. …

The Application, Construction, And Validation Of Hidden Markov Model Profiles For Carbonic Anhydrase Enzymes, Samuel F. Kaplan

Master's Theses

Carbonic anhydrases (CAs) catalyze the reversible hydration of CO2 and have evolved independently at least eight times, resulting in structurally distinct enzyme families (α, β, γ, δ, ζ, η, θ, ι). Traditional sequence alignment methods struggle to classify these convergently evolved proteins because their sequential similarity does not reliably indicate functional or evolutionary relationships. Many CA sequences in public databases are annotated generically without family assignments, and prior computational approaches have focused predominantly on the three well characterized families (α, β, γ), leaving the five recently discovered classes without robust classification tools. Family level assignment is often a prerequisite for …

Neurosymbolic Counterpoint Generation, Paul D. Jarski

Master's Theses

Recent advancements in generative artificial intelligence have revolutionized music generation, yet research has predominantly focused on raw audio synthesis over music in symbolic form, i.e. a score. This thesis presents the first neurosymbolic model designed to generate imitative Renaissance counterpoint in symbolic (MIDI) format. By leveraging an autoregressive Transformer architecture, this research explores the capacity of deep learning models to manage independent voices and strict stylistic constraints.

We compare multiple data representation strategies with distinct tokenization methods. The proposed model incorporates a symbolic component that enforces fundamental contrapuntal rules. Additionally, this thesis contributes a preprocessed dataset of Renaissance polyphony, in …

Argument-Based Consistency In Toxicity Explanations Of Llms, Ramaravind K. Mothilal, Joanna Roy, Syed Ishtiaque Ahmed, Shion Guha

Health Services and Informatics Research

The discourse around toxicity and LLMs in NLP largely revolves around detection tasks. This work shifts the focus to evaluating LLMs’ reasoning about toxicity—from their explanations that justify a stance—to enhance their trustworthiness in downstream tasks. Despite extensive research on explainability, it is not straightforward to adopt existing methods to evaluate free-form toxicity explanation due to their over-reliance on input text perturbations, among other challenges. To account for these, we propose a novel, theoretically-grounded multi-dimensional criterion, Argument-based Consistency (ArC), that measures the extent to which LLMs’ free-form toxicity explanations reflect an ideal and logical argumentation process. Based on uncertainty quantification, …

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission In A Two-Group Structural Heterogeneous Syringe-Sharing Network (M2), Seun Ale, Que Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model extended a baseline homogeneous model by incorporating structural heterogeneity via a two-group interaction framework. The syringe-sharing population in the model is divided into inner and outer circle groups representing individuals with differing levels of syringe-sharing interaction intensity. While all agents share the same syringe-sharing probability and epidemiological processes remain identical across agents, the number of daily interaction opportunities differs between the two groups. Interactions in the model are generated dynamically using proximity-based sampling at each timestep …

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission In A Three-Group Structural Heterogeneous Syringe-Sharing Network (M3), Seun Ale, Que Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model incorporates structural heterogeneity through a three-group interaction framework. The syringe-sharing population in the model is divided into core, inner, and outer circle groups representing individuals with high, moderate, and low levels of syringe-sharing interaction intensity, respectively. While the syringe-sharing rate and all epidemiological processes remain identical across agents, the number of daily interaction opportunities differs by agent grouping, capturing variation in structural position within the syringe-sharing network. Interactions are generated dynamically using proximity-based sampling at each …

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission With Inter-Group Structural And Behavioural Heterogeneous Syringe-Sharing Networks (M4), Seun Ale, Que Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model incorporates structural heterogeneity through a three-group interaction framework and behavioural heterogeneity through group-specific syringe-sharing rates. The syringe-sharing population in the model is divided into core, inner, and outer circle groups representing individuals with high, moderate, and low levels of syringe-sharing interaction intensity, respectively. In addition to differences in the number of daily interaction opportunities across groups, agents in each group are assigned distinct syringe-sharing probabilities, reflecting variation in risk-taking behaviour across structural groups within the syringe-sharing …

The Illusion Of Causality In Llms: A Developmentally Grounded Analysis Of Semantic Scaffolding And Benchmark–Capability Mismatches, Daisuke Akiba

Publications and Research

Recent benchmarks increasingly report that large language models (LLMs) exhibit human-like causal reasoning abilities, including counterfactual inference and intervention planning. However, many such evaluations rely on domains that are heavily represented in training data and embed strong semantic cues, raising the possibility that apparent causal competence may reflect semantic pattern recombination rather than structure-sensitive causal reasoning. Drawing on human developmental theories of causal induction, this perspective argues that genuine causal understanding requires robustness to novelty and reliance on conditional structure rather than semantic familiarity. To illustrate the testability of this claim, the paper includes a pilot demonstration using synthetic causal …

A Cryptographic Perspective On The Verifiability Of Quantum Advantage, Nai-Hui Chia, Honghao Fu, Fang Song, Penghui Yao

Computer Science Faculty Publications and Presentations

In recent years, achieving verifiable quantum advantage on a NISQ device has emerged as an important open problem in quantum information. The sampling-based quantum advantages are not known to have efficient verification methods. This article investigates the verification of quantum advantage from a cryptographic perspective. We establish a strong connection between the verifiability of quantum advantage and cryptographic and complexity primitives, including efficiently samplable, statistically far but computationally indistinguishable pairs of (mixed) quantum states (EFI), pseudorandom states (PRS), and variants of minimum circuit size problems (MCSP). Specifically, we prove that a) a sampling-based quantum advantage is either verifiable or can …

Using Large Language Models To Analyze Political Texts Through Natural Language Understanding, Kenneth Benoit, Scott De Marchi, Conor Laver, Michael Laver, Jinshuai Ma

Research Collection School of Social Sciences

Large language models (LLMs) offer scalable alternatives to human experts when analyzing political texts for meaning, using natural language understanding (NLU). Qualitative NLU methods relying on human experts are severely limited by cost and scalability. Statistical text-as-data methods are scalable but rely on strong and often unrealistic assumptions. We propose a systematic, scalable, and replicable method that can extend existing qualitative and quantitative approaches by using LLMs to interpret texts meaningfully rather than as mere data. Our ensemble means of LLM-generated estimates of party positions on six key issue dimensions correlate highly with equivalent mean ratings by country specialists. When …

In What Style Shall I Confront Them? The Role Of Social Relationships In Social Correction Of Misinformation Among The Uk And Arab Social Media Users, Muaadh Noman, Mohamed B. Almourad, Ala Yankouskaya, Firoj Alam, Raian Ali

All Works

This study investigates how social factors influence the likelihood of employing direct or indirect communication styles when correcting misinformation on social media in two different cultural contexts, the United Kingdom (UK) and the Arab Gulf Cooperation Council (GCC) countries. We conducted an online survey, supported by vignettes, that involved 686 participants, 367 from the UK and 319 from the Arab GCC countries. Participants were presented with a misinformation scenario and asked about their likelihood of using direct or indirect communication styles to correct their acquaintances. The survey captured variations in gender similarity (same vs. different gender), social status (lower vs. …

Navigating Ethical Considerations And Implications Of Ai Chatbots In Higher Education: A Systematic Review, Ons Al-Shamaileh, Ramy Hammady, Mahmoud Abdelrahman, Omar Mubin

All Works

This systematic review explores the ethical challenges associated with the use of AI-based chatbots in higher education, focusing on their implications for students, educators, institutions, and administrative stakeholders. Following PRISMA guidelines, peer-reviewed literature published between 2014 and 2024 was systematically identified across eight major academic databases, yielding a total of 109 eligible studies. A thematic analysis of the included literature indicates that concerns related to academic integrity are most frequently discussed, alongside recurring issues involving data privacy and security, algorithmic bias, overreliance on automated systems, and the risk of inaccurate or misleading outputs. The findings further demonstrate considerable variation in …

Law Library Blog (March 2026): Legal Beagle's Blog Archive, Roger Williams University School Of Law

Law Library Newsletters/Blog

No abstract provided.

Stard-Net: Spatiotemporal Attention For Robust Detection Of Tiny Airborne Objects From Moving Drones, Hasibur Rahman, Sanjay Kumar Madria

Computer Science Faculty Research & Creative Works

The rapid adoption of drones across various domains, alongside advancements in computer vision, has driven growing interest in vision-based airborne object detection from moving aerial platforms. However, this task remains challenging due to the small scale of objects, camouflage within cluttered backgrounds, and occlusions. To address these challenges, we introduce an end-to-end detection framework that integrates a Drone Receptive Field Block (DRFB) to extract multiscale and geometrically diverse features, specifically designed to enhance the detection of small and camouflaged airborne objects. To model motion patterns over time while preserving spatial structure, particularly for detecting camouflaged, cluttered and occluded objects with …

Addressing Graph Heterogeneity And Heterophily From A Spectral Perspective, Kangkang Lu, Yanhua Yu, Ruopei Guo, Nan Cheng, Zhiyong Huang, Yunshan Ma, Meiyu Liang, Yuling Wang, Xiting Qin, Yimeng Ren, Tat-Seng Chua

Research Collection School Of Computing and Information Systems

Graph Neural Networks (GNNs) face two key challenges, heterogeneity and heterophily, which often degrade performance. Existing approaches either focus narrowly on specific meta-paths, limiting their expressiveness, or are expressive but cannot effectively leverage higher-order neighbors. In this paper, we propose the Heterogeneous Heterophilic Spectral Graph Neural Network (H2SGNN), which combines local independent filtering to adaptively handle meta-path subgraphs with varying homophily ratios, and global hybrid filtering to capture high-order neighbor interactions with linear computational complexity. On five heterogeneous graph benchmarks—DBLP, ACM, IMDB, AMiner, and Yelp—H2SGNN consistently outperforms strong baselines, for example, achieving +1.0% Macro-F1 and +1.3% Micro-F1 on IMDB. It …

Invert Your Prompt: Editing-Aware Diffusion Inversion, Yangyang Xu, Wenqi Shao, Yong Du, Haiming Zhu, Yang Zhou, Jiayuan Xie, Ping Luo, Shengfeng He

Research Collection School Of Computing and Information Systems

Recent advancements in text-guided diffusion models have enabled powerful image manipulation capabilities. However, balancing reconstruction fidelity and editability for real images remains a significant challenge. In this work, we introduce Editing Inversion (EditInv), a novel framework that inverts and edits real images for specific editing tasks by optimizing specific prompt embeddings within the extended  space. By leveraging distinct embeddings across different U-Net layers and time steps, EditInv seamlessly integrates inversion and editing through reciprocal optimization, ensuring both high fidelity and precise editability. This hierarchical editing mechanism classifies tasks into structure, appearance, and global edits, optimizing only those embeddings that are …

Improving Public Transport Through Machine Learning Influence Flow Analysis (Mifa): Southern England Bus Case Study, Benjamin Lee, Wolfgang Garn, Masoud Fakhimi, Nick F. Ryman-Tubb

Research Collection School Of Accountancy

Public transport (PT) is crucial for enhancing the quality of life and enabling sustainable urban development. As part of the UK Transport Investment Strategy, increasing PT usage is critical to achieving efficient and sustainable mobility. This paper introduces Machine Learning Influence Flow Analysis (MIFA), a novel framework for identifying the key influencers of PT usage. Using survey data from bus passengers in Southern England, we evaluate machine learning models. Subsequently, MIFA uncovers that easy payments, e-ticketing, and mobile applications can substantially improve the PT service. MIFA’s implementation demonstrates that strength and importance lead to specific insights into how service characteristics …

Video Generation Techniques For Novel View Synthesis With Flow-Matching Transformers, Xiuyuan Qiu

Master's Theses

Novel view synthesis (NVS) aims to generate images of a scene from unseen camera viewpoints. Recent work, such as Stable Virtual Camera, shows that large-scale image diffusion models like Stable Diffusion can be adapted for pose-conditioned view synthesis by incorporating video-generation techniques with camera conditioning. In this thesis, we introduce MVFlow, a new NVS model that extends this approach to a different image generation architecture: a flow-matching diffusion transformer, specifically FLUX.1, which has demonstrated strong performance in image synthesis. We evaluate MVFlow under varying input view counts and pose distance settings. Our results show that this architectural transfer is feasible; …

Opencil: Benchmarking Out-Of-Distribution Detection In Class Incremental Learning, Wenjun Miao, Guansong Pang, Trong-Tung Nguyen, Ruohuan Fang, Jin Zheng, Xiao Bai

Research Collection School Of Computing and Information Systems

Class incremental learning (CIL) aims to learn a model that can not only incrementally accommodate new classes, but also maintain the learned knowledge of old classes. Out-of-distribution (OOD) detection in CIL is to retain this incremental learning ability, while being able to reject unknown samples that are drawn from different distributions of the learned classes. This capability is crucial to the safety of deploying CIL models in open worlds. However, despite remarkable advancements in the respective CIL and OOD detection, there lacks a systematic and large-scale benchmark to assess the capability of advanced CIL models in detecting OOD samples. To …

A Knowledge Transfer-Based Membrane Evolutionary Algorithm For Solving Large-Scale Sorted Waste Collection Problem With Timeliness, Wenxue Zhang, Boquan Gao, Aldy Gunawan, Yunyun Niu, Jianhua Xiao

Research Collection School Of Computing and Information Systems

The sorted collection of municipal solid waste has emerged as an effective waste management strategy due to varying timeliness requirements across different waste types, giving rise to the critical research challenge of timeliness-based waste collection. While existing algorithms primarily focus on small-scale versions of this problem, solving large-scale timeliness-based waste collection problems remains particularly challenging. To tackle this issue, this paper proposes a knowledge transfer-based membrane evolutionary algorithm. Specifically, the original problem and simplified problem are constructed in different membranes respectively, and the knowledge transfer learning mechanism is incorporated into the membrane evolutionary algorithm, enabling effective information exchange between the …

Plm-Effector: Unleashing The Potential Of Protein Language Models For Bacterial Secreted Protein Prediction, Dandan Zheng, Lihong Chen, Guansong Pang, Jian Yang

Research Collection School Of Computing and Information Systems

Bacterial secreted proteins, particularly effectors delivered by specialized secretion systems, are key mediators of virulence and host-pathogen interactions. However, accurate computational identification remains challenging, as many existing methods rely heavily on sequence similarity or handcrafted features, and often focus on a single secretion system. Recent studies have reported that some bacterial effectors may be associated with more than one secretion system, highlighting the complexity of secretion system annotation and motivating the development of system-aware computational prediction approaches. Here, we present PLM-Effector, a hybrid deep learning framework that integrates modern protein language models (PLMs) with multiple neural architectures via a two-layer …

Optimizing And Fortifying Ai Software Through The Lens Of Artifact Synthesis, Jieke Shi

Dissertations and Theses Collection (Open Access)

Artificial Intelligence (AI) has transformed the software landscape, ushering in a new era of intelligent systems that increasingly shape our daily lives. This transformation is evident in various domains, including Software Engineering (SE), where Large Language Models (LLMs) support many development tools, and control systems, where self-driving cars and autonomous drones rely on deep learning models for real-time decision-making. These AI systems are collectively referred to as AI software, with the former categorized as AI4SE software (AI for Software Engineering) and the latter as AI4Control software (AI for Control). As AI software becomes central to modern computing infrastructure, its reliability …

How Agile Became The Design Philosophy Of Ai Fishbowl Under Real-World Constraints, Jad Saad

University Honors Theses

This capstone review examines the development of AI Fishbowl, a public-facing, interactive artificial intelligence system, as a case study in how Agile methods evolve from a project management tool into a design philosophy under real-world constraints. Although the project adopted an Agile workflow early on through a Kanban-style task management approach, the initial system design and architecture were still shaped by a largely plan-first mindset. This created a mismatch between flexible process and rigid design assumptions, which became increasingly apparent as the team moved from high-level architecture into implementation.

A critical turning point occurred when early architectural plans proved difficult …

Detecting Bitstream-Level Fpga Trojans With An Snn, Kylie Arnett

Shelby Hall Graduate Research Forum Presentations

Limited research has been conducted on SNNs for FPGA Trojan detection. FPGA design is often handled by manufacturers outside the U.S. FPGA manufactures outsource production to third-party foundries. This multi-step process introduces security vulnerabilities and increases risk of Hardware Trojan insertion.

Key Questions: To what extent can an FPGA be manipulated at the bitstream level to enable or disable encryption algorithms?

Can SNNs accurately detect the presence of Trojans within an FPGA?