Systems Biology Commons^™

The Hyperthermophilic Archaeon Sulfolobus: From Exploration To Exploitation, Stan J.J. Brouns, Thijs J.G. Ettema, Kenneth M. Stedman, Jasper Walther, Hauke Smith, Ambrosius P.L. Snijders, Mark Young, Rolf Bernander, Phillip C. Wright, Betina Siebers, John Van Der Oost

Biology Faculty Publications and Presentations

In the early 1970s, Sulfolobus was first isolated by Thomas Brock and co-workers from sulfur-rich acidic hot springs in Yellowstone National Park. Sulfolobus became one of the model organisms of Archaea in general, and of Crenarchaea in particular. Many of its unusual physiological characteristics have been investigated, and several of its thermostable enzymes have been studied in considerable detail. For fundamental reasons, and because of its potential for industrial applications, Sulfolobus has been selected for a genome sequence project. The recent completion of the Sulfolobus solfataricus genome has set the stage for a series of postgenome research lines that will …

The Prairie Naturalist Volume 35, No.3 September 2003

The Prairie Naturalist

BROWN-HEADED COWBIRDS IN GRASSLANDS: THEIR HABITATS, HOSTS, AND RESPONSE TO MANAGEMENT ▪ J. A. Shaffer, C. M. Goldade, M. F. Dinkins, D. H. Johnson, L. D. Igl, and B. R. Euliss

LlGUMIA SUBROSTRATA (BIVALVIA: UNIONIDAE) IN MINNESOTA AND ITS STATUS IN THE UPPER MIDWEST ▪ B. E. Sietman, D. E. Kelner, R. A. Hart, and M. Davis

GUIDELINES FOR FINDING NESTS OF PASSERINE BIRDS IN TALLGRASS PRAIRIE ▪ M. Winter, S. E. Hawks, J. A. Shaffer, and D. H. Johnson

RESPONSE OF THE LEAST SHREW TO PREY OLFACTORY CUES ▪ F. Punzo and C. Gonzalez

Book Reviews

North Dakota's Butterflies …

The Prairie Naturalist Volume 35, No.2 June 2003

The Prairie Naturalist

NEST PARASITISM ON CONSTRUCTED ISLANDS IN NORTHWESTERN NORTH DAKOTA ▪ A. L. Zimmerman, M. A. Sovada, T. K. Kessler, and R. K. Murphy

HISTORICAL AND RECENT RECORDS AND FIRST NEST RECORDS OF HENSLOW'S SPARROW IN NORTH DAKOTA ▪ J. A. Shaffer, L. D. Igl, and F. Vanhove

AMERICAN AVOCET NESTING ON CONSTRUCTED ISLANDS IN NORTH DAKOTA ▪ A. L. Dahl, D. H. Johnson, L. D. Igl, K. L. Baer, T. L. Shaffer, M. A. Johnson, and R. E. Reynolds

CHRISTMAS BIRD COUNTS FOR NORTH DAKOTA 2002 ▪ R. N. Randall

MATERNAL LIVER AND EGG THIAMINE CONCENTRATIONS IN CHINOOK SALMON FROM …

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

The Prairie Naturalist Volume 35, No.1 March 2003

The Prairie Naturalist

PATTERNS OF IMPALING IN A MIGRATORY POPULATION OF THE LOGGERHEAD SHRIKE ▪ J. D. Esely and E. K. Bollinger

COMPARISON OF FEEDING IN TWO PHENOLOGICALLY DISTINCT GRASSHOPPERS ▪ K. J. Haynes

DISTRIBUTION AND TRENDS OF BANDED CANADA GEESE IN SOUTH DAKOTA ▪ J. S. Gleason, J. A. Jenks, and P. W. Mammenga

FLORISTIC ASSESSMENT OF SAND PRAIRIES AND SEDGE MEADOWS, LEE COUNTY, ILLINOIS ▪ W. C. Handel, L. R. Phillippe, and J. E. Ebinger

POULT PROTECTION BY MERRIAM'S TURKEY FEMALES TOWARDS A NORTHERN GOSHAWK ▪ C. P. Lehman

ADDITIONAL ECTOPARASITIC RECORDS OF BATS FROM KANSAS ▪ D. W. Sparks, K. …

The Prairie Naturalist Volume 34, No. 3/4 September/December 2002

The Prairie Naturalist

SEASONAL FOOD HABITS OF COYOTES IN NORTHEASTERN KANSAS ▪ J. F. Kamler, P. S. Gipson, and C. C. Perchellet

SELECTION OF NESTING HABITAT BY SHARP-TAILED GROUSE IN THE NEBRASKA SANDHILLS ▪ B. L. Prose, B. S. Cade, and D. Hein

PATTERNS OF REPRODUCTION FOR WESTERN HARVEST MICE IN NORTH-CENTRAL KANSAS ▪ J. R. Goheen, G. A. Kaufman, and D. W. Kaufman

THE IMPACT OF RECREATIONAL TRAILS AND GRAZING ON SMALL MAMMALS IN THE COLORADO PIEDMONT ▪ C. A. Meaney, A. K. Ruggles, N. W. Clippinger, and B. C. Lubow

CHRISTMAS BIRD COUNTS FOR NORTH DAKOTA 2001 ▪ R. N. Randall …

Current Issues In Forensic Dna Profiling, Dan E. Krane

Biological Sciences Faculty Publications

No abstract provided.

The Prairie Naturalist Volume 34, No. 1/2 March/June 2002

The Prairie Naturalist

LOCALIZED MOVEMENTS AND SITE FIDELITY OF WHITETAILED DEER IN THE NORTHERN GREAT PLAINS ▪ B. J. Kernohan, J. A. Jenks, and D. E. Naugle

SPAWNING-SEASON HOMING OF COMMON CARP AND RIVER CARPSUCKER ▪ J. L. Bonneau and D. L. Scamecchia

HOME RANGES OF RING-NECKED PHEASANTS IN NORTHWESTERN KANSAS ▪ R. D. Applegate, B. E. Flock, P. S. Gipson, M. W. McCoy, and K. E. Kemp

RESPONSES OF BIGHORN SHEEP TO DISTURBANCE IN LOW-ELEVATION GRASSLANDS ▪ R. W. Sayre, R. W. Seabloom, and W. F. Jensen

DISTRIBUTION OF CHANNEL CATFISH LIFE STAGES IN A PRAIRIE RIVER BASIN ▪ . J. C. …

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

A Broad Survey Of Web-Based Bioinformatics Research And Data Mining Using Blast, Wooi Keng Tan

Student Works (2000-2009)

This research covers a broad survey of bioinformatics resources and data mining tools available on the web. Bioinformatics is the field of science in which biology, computer science, and information technology merge to form a single discipline. The three main public domain bioinformatics resources covered here includes NCBI (National Center for Biotechnology Information), EBI (European Bioinformatics Institute) and Genome Net (Japanese Bioinfom1atics Servers). The technology now has enabled researchers to gain global access to these databases and software. These databases and tools will provide the research community with a wealth of information and computing tools followed with the vast data …

The Prairie Naturalist Volume 33, No.4 December 2001

The Prairie Naturalist

SPECIES, SEASON, AND DENSITY OF BURIED SEEDS SURVIVING FOX SQUIRREL DEPREDATION ▪ C. C. Smith, and J. M. Briggs

RELATI0NSHIP OF HYDROLOGICAL CONDITIONS AND POPULATlONS OF BREEDING PIPING PLOVERS ▪ D. S. Licht,

DEMODICOSIS IN A WHITE-TAILED DEER (ODOCOILEUS VIRGINIANUS) IN SOUTH DAKOTA ▪ C. N. Jacques, J. A Jenks. M. B. Hildreth. R. J. Schauer, and D. D. Johnson

SURVEYS OF CALLING AMPHIBIANS IN NORTH DAKOTA ▪ D. H. Johnson, and R. D. Batie

EFFECTS OF HUMAN PRESENCE ON VOCALIZATIONS OF GRASSLAND BIRDS IN KANSAS ▪ S. L Bye, R. J. Robel, and K. E. Kemp

Reviewers 2001

Author …

The Prairie Naturalist Volume 33, No.3 September 2001

The Prairie Naturalist

SEASONAL REPRODUCTION IN SIGMODON HISPIDUS INHABITING TALLGRASS PRAIRIES OF OKLAHOMA ▪ J. A. Wilson and R. L. Lochmiller

USE OF THE INDEX OF BIOLOGICAL INTEGRITY IN EASTERN SOUTH DAKOtA RIVERS ▪ C. L. Milewski, C. R. Berry, and D. Dieterman

SEED USE BY VERTEBRATES AND INVERTEBRATES IN TALLGRASS PRAIRIE ▪ A. W. Reed, G. A. Kaufman, J. E. Boyer, Jr., and D. W. Kaufman

RANGE EXPANSION OF THE PILEATED WOODPECKER IN NORTH DAKOTA ▪ J. A. Dechant 163

LAB FATTENING AND NON-INVASIVE ESTIMATES OF BODY COMPOSITION IN DEER MICE ▪ E. T. Unangst, Jr., M. J. Blair, M. W. Granger, …

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

The Prairie Naturalist Volume 33, No.2 June 2001

The Prairie Naturalist

A LITERATURE-BASED CHECKLIST OF KANSAS ROBBER FLIES (DIPTERA: ASILIDAE) ▪ R. J. Beckemeyer

DISTRIBUTIONS OF ROOSTING SANDHILL CRANES AS

IDENTIFIED BY AERIAL THERMOGRAPHY ▪ T. L. Parrish, W. A. Hubert, S. H. Anderson, M. 1. Pucherelli, and W. Mangus

CHRISTMAS BIRD COUNTS FOR NORTH DAKOTA 2000 ▪ R. N. Randall

FIRST RECORD OF THE CINERElJS SHREW FOR RILEY COUNTY, KANSAS. R. S. Matlack, D. W. Kaufman, and R. E. Charlton

BADGER REMOVES EGG FROM ISLAND IN PRAIRIE ALKALI LAKE ▪ B. R. Casler and R. K. Murphy

ON THE RARITY OF FOOD PROVISIONING BY MALE DICKCISSELS ▪ L. D. Igl …

Casco Bay Watershed Wetlands Characterization, State Planning Office

Maine Collection

Casco Bay Watershed Wetlands Characterization

State of Maine Executive Department - State Planning Office

Augusta, Maine, May 2001

Contents: Abstract / Background / Getting Started / Designing the System / The Characterization / The Prioritization / Results / Cautions / Significance of the Approach / Literature Cited / Figure 1 - Biophysical Regions of Maine / Appendix A: Steering Committee Members / Appendix B: Field Verification Form / Appendix C: Contacts

The Prairie Naturalist Volume 33, No.1 March 2001

The Prairie Naturalist

VEGETATION STRUCTURE AND INVERTEBRATE BIOMASS OF CONVENTIONAL AND SUSTAINABLE SORGHUM FIELDS IN KANSAS ▪ R. J. Robel and C Xiong

MONTHLY OPEN-WATER BOTTOM TRAWLING AT TWO SOUTH DAKOTA LAKES ▪ B. G. Blackwell and M. L. Brown

WINTER SURVIVAL AND HOME RANGE OF FEMALE RING-NECKED PHEASANT IN RELATION TO FOOD' PLOTS ▪ A E. Gabbert, J. R. Purvis, L. D. Flake, and A P. Leif

THIRD BREEDING RECORD OF BLUE GROSBEAK IN NORTH DAKOTA ▪ K. H. Haas and C A Haas

EVIDENCE OF AMERICAN WOODCOCK NESTING IN SOUTHEASTERN NORTH DAKOTA ▪ F. Y Sargeant and G. A Sargeant

BOOK …

The Prairie Naturalist Volume 32, No.4 December 2000

The Prairie Naturalist

LOCATING NESTS OF BIRDS IN GRASSLANDS FROM A MOBILE TOWER BLIND ▪ . T. F. Fondell, S. T. Hoekman, and L J. Ball

OBSERVATIONS ON SMALL MAMMALS RECOVERED FROM OWL PELLETS FROM NEBRASKA ▪ J J Huebschman, P. W Freeman, H. H. Genoways, and J A. Gubanyi

DlSTRIBUTION, HABITAT USE, AND NESTING SUCCESS OF HENSLOW'S SPARROW IN OKLAHOMA ▪ D. L. Reinking, D. A. Wiedenfeld, D. H. Wolfe, and R. W. Rohrbaugh, Jr.

REPRODUCTIVE SUCCESS OF PIPING PLOVERS ON ALKALI LAKES IN NORTH DAKOTA AND MONTANA ▪ R. K. Murphy, M. J. Rabenberg, M. L. Sondreal, B. R. Casler, and …

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

The Prairie Naturalist Volume 32, No.3 September 2000

The Prairie Naturalist

SPECIAL FEATURE: LESSER PRAIRIE-CHICKEN

PREFACE ▪ C. E. Braun

NOTE ON SPECIAL FEATURES

POPULATION STATUS AND MANAGEMENT OF LESSER PRAIRIE-CHICKEN IN COLORADO ▪ K. M. Giesen

STATUS OF NESTING HABITAT FOR LESSER PRAIRIE-CHICKEN IN NEW MEXICO ▪ J. A. Bailey, J. Klingel, and C. A. Davis

STATUS OF THE LESSER PRAIRIE-CHICKEN IN NEW MEXICO, 1999 ▪ . J. A. Bailey, and S. O. Williams III

DISTRIBUTION AND POPULATION TREND OF LESSER PRAIRIE-CHICKEN IN KANSAS ▪ W. E. Jensen, D A. Robinson. Jr and R. D. Applegate

REVIEW OF THE HISTORICAL AND PRESENT STATUS OF THE LESSER PRAIRIE-CHICKEN (Tympanuchus pallidicinctus) IN …

Regional Variation In Recruitment Of Hemlock Seedlings And Saplings In The Upper Great Lakes, Usa, Thomas P. Rooney, Ronald J. Mccormick, Stephen L. Solheim, Donald M. Waller

Biological Sciences Faculty Publications

Mature eastern hemlock–northern hardwood forest cover decreased drastically in the upper Midwest following European settlement and has yet to rebound substantially. Previous studies show that stands retaining substantial hemlock canopy coverage have low hemlock seedling and sapling densities. Results from various geographically restricted studies suggest several possible mechanisms that could cause low seedling or sapling density. We examined the relative importance of these proposed mechanisms in the Southern Superior Uplands Section of the Laurentian Forest Province. We surveyed 294- m2 plots in 100 hemlock stands in northern Wisconsin and western upper Michigan to assess how these proposed mechanisms affect the …

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

The Prairie Naturalist Volume 32, No.2 June 2000

The Prairie Naturalist

EVALUATING MORNING AND AFTERNOON ELECTROFISHING CATCH RATES FOR LARGEMOUTH BASS IN KANSAS LAKES C. A. Cox, and R. D. Schultz

DYNAMICS OF GREEN ASH WOODLANDS IN THEODORE ROOSEVELT NATIONAL PARK ▪ L. R. Irby, J. E. Norland, M. G. Sullivan, J. A. Westfall, Jr., and P. Anderson

STATUS OF THE ARKANSAS DARTER IN SOUTH-CENTRAL KANSAS AND ADJACENT OKLAHOMA ▪ M. E. Eberle, and W J. Stark

CHRISTMAS BIRD COUNTS FOR NORTH DAKOTA 1999 R. N. Randall

AN OBSERVATION OF POSSIBLE BROOD ADOPTION IN RUDDY DUCKS ▪ J. T. Pelayo

MAXILLARY CANINE TEETH IN A NORTH DAKOTA DEER ▪ W. F. …

The Prairie Naturalist Volume 32, No.1 March 2000

The Prairie Naturalist

FRESHWATER MUSSELS (BIVALVIA: UNIONOIDEA) IN STREAMS OF NORTHWESTERN KANSAS ▪ S. M. Bergman, M. E. Eberle, and B. K. Obenneyer

PISCIVOROUS BIRD DEPREDATION AT NORTHERN MINNESOTA AQUACULTURE FACILITIES ▪ G. K. Bridgman, E. H. Rave, and J. M. Rafferty 17

EFFECTS OF MOWED TRAILS ON DEPREDATION OF ARTIFICIAL NESTS IN GRASSLAND ▪ D. J. Rosenblatt, J. J. Newton, and E . J. Heske

PLANT COMMUNITY PATTERNS ON UPLAND PRAIRIE IN THE EASTERN NEBRASKA SANDHILLS ▪ W. H. Schacht, J. D. Volesky, D. Bauer, A. J. Smart, and E. M. Mousel

AMERICAN BITTERN DEPREDATES SORA ▪ J. E. Austin, and M. …

Periphyton Production On Wood And Sediment: Substratum-Specific Response To Laboratory And Whole-Lake Nutrient Manipulations, Yvonne Vadeboncoeur, David M. Lodge

Biological Sciences Faculty Publications

Substratum heterogeneity is a large source of variability in periphyton production, but the influence of substratum on periphyton response to experimental manipulations is rarely measured. Using laboratory and whole-lake experiments, we compared area-specific primary production of periphyton on wood (epixylon) and sediment (epipelon), and tested whether periphyton on the 2 substrata responded differently to water-column fertilization. In the laboratory, natural periphyton assemblages on wood or sediment were exposed to 1 of 6 treatments in a fully factorial (light [250, 70, or 10 μmol m⁻² s⁻¹] × nutrient [control or + N and P]) experiment. We measured ^{14 …}

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

The Prairie Naturalist Volume 31 No.4 December 1999

The Prairie Naturalist

THE FISHES OF THE UPPER MOREAU RIVER ▪ T. M. Loomis, C. R. Berry, Jr., and J. Erickson

DO INTERNAL FIRE LANES AFFECT NEST DEPREDATION RATES IN PRAIRIES? ▪ K. A. Warren and M. R. Ryan

SPECIES COMPOSITION AND TROPHIC STRUCTURE OF INSECT COMMUNITIES IN TEXAS PRAIRIES. ▪ G. N. Cameron and E. H. Bryant

FIDELITY OF MALLARDS TO ARTIFICIAL NESTING STRl!CTURES ▪ T. Yerkes

OBSERVATIONS ON REPRODUCTION IN THREE SPECIES OF BATS ▪ D. W. Sparks, J. R. Choate, and R. J. Winn

EARLIEST SEASONAL RECORD OF REPRODUCTION IN THE HOARY BAT ON THE NORTHERN GREAT PLAINS ▪ T. …

The Prairie Naturalist Volume 31, No.3 September 1999

The Prairie Naturalist

HANTA VIRUS INFECTION IN NORTH DAKOTA SMALL MAMMALS: 1994,1995 ▪ R. W. Seabloom, J. J. Feist, and S L. McDonough

AMERICAN WOODCOCK IN COLORADO ▪ C. E. Braun

AVIFAUNA OF AN EARLY SUCCESSIONAL HABITAT ALONG THE MIDDLE MISSOURI RIVER ▪ D. L. Swanson

REPRODUCTIVE STATUS OF FLEA BEETLES IN NORTH DAKOTA AND SOUTH DAKOTA ▪ M. A. Brinkman and S. A. Clay

NUTRIENT AND ENERGY CHARACTERISTICS OF INVERTEBRATES FROM TWO LOCATIONS IN KANSAS ▪ S. G. Papon, R. J. Robel, and K. Kemp

BOOK REVIEWS

The Wood Warblers ▪ M. G. Knutson

A Fascination With Birds. ▪ J. A. Dechant …

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

The Prairie Naturalist Volume 31, No.2 June 1999

The Prairie Naturalist

SPATlAL VARIATION IN POPULATION CHARACTERISTICS OF SHOVELNOSE STURGEON IN THE KANSAS RIVER ▪ M. C. Quist and C. S. Guy

INFLUENCE OF FIRE AND TRAPPING EFFORT ON GROUND BEETLES IN A RECONSTRUCTED TALLGRASS PRAIRIE ▪ K. J. Larsen and J. B. Williams

FISH ASSEMBLAGES AND HABITAT RELATIONSHIPS IN A SMALL NORTHERN GREAT PLAINS STREAM ▪ C. A. Barfoot and R. G. White

CHRISTMAS BIRD COUNTS FOR NORTH DAKOTA 1998 ▪ R. N. Randall

NEW RECORDS OF THE PYGMY SHREW IN SOUTHEAST SOUTH DAKOTA ▪ C. B. King, G. M. Wilson, and P. D. Sudman

BUFFLEHEAD BROOD IN NORTHEASTERN SOUTH DAKOTA …

The Prairie Naturalist Volume 31, No.1 March 1999

The Prairie Naturalist

NEST SITE CHARACTERISTICS OF RING-NECKED PHEASANTS IN EASTERN SOUTH DAKOTA ▪ J. R. Purvis, A. E. Gabbert, and L. D. Flake

FIELD EVALUATION OF RADIOTRANSMITTERS FOR NORTHERN POCKET GOPHERS ▪ G. W. Witmer and M. J. Pipas

DISTRlBllTiON OF A MOlJND-BUILDING ANT ON NATIVE AND RESTORED PRAIRIES IN NORTHEASTERN KANSAS ▪ J. Foster and W. D. Kettle

RESULTS OF A WILD TURKEY RELEASE IN KANSAS TALLGRASS PRAIRIE ▪ J. F. Cully, Jr., P. R. Lemons, II, and R. D. Applegate

BODY-SIZE AND AGE'-RELATED MASTICATORY RELATIONSHIPS IN TWO SPECIES OF BLARINA ▪ B. J. Verts, L. N. Carraway, and R. A. …