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Full-Text Articles in Systems Biology

Comparison Of Northern Flying And Red Squirrel Phylogenies With Focus On The Insular United States, Alyssa M. Kiesow, Hugh B. Britten Dec 2018

Comparison Of Northern Flying And Red Squirrel Phylogenies With Focus On The Insular United States, Alyssa M. Kiesow, Hugh B. Britten

The Prairie Naturalist

Northern flying squirrel (Glaucomys sabrinus) and red squirrel (Tamiasciurus hudsonicus) populations are endemic to northern North America, including the Black Hills. The Black Hills populations are considered disjunct from other populations within their range. We examined insular populations to determine whether arboreal squirrels in the Black Hills each represent a unique population. We trapped and collected ear samples from northern flying and red squirrels in the Black Hills and in areas of Montana, Wyoming, Idaho, Utah, Minnesota, and Wisconsin to infer population phylogenies with special consideration of the Black Hills population. Microsatellite loci and two mtDNA sequences were used for …


Contributions Of Stocked And Naturally Reproduced Rainbow Trout In The Deerfield Reservoir System, Jacob L. Davis, Jerry W. Wilhite, Greg Simpson, Michael E. Barnes, Kaite N. Bertrand, David W. Willis Jun 2013

Contributions Of Stocked And Naturally Reproduced Rainbow Trout In The Deerfield Reservoir System, Jacob L. Davis, Jerry W. Wilhite, Greg Simpson, Michael E. Barnes, Kaite N. Bertrand, David W. Willis

The Prairie Naturalist

Deerfield Reservoir in the Black Hills of South Dakota and its tributary system are managed as hatchery supplemented rainbow trout (Oncorhynchus mykiss) fisheries. Three genetically unique strains of rainbow trout (Shasta, Erwin and McConaughy) are stocked into the system. Recently, juvenile rainbow trout of unknown origin were collected in the tributary system above Deerfield Reservoir, indicating potential natural reproduction. Understanding the genetic origins and ability of these rainbow trout to contribute to the fishery is essential in determining the proper management strategy for these waters. Our objectives were to 1) evaluate the genetic origins of potentially naturally reproduced rainbow trout …


Fish Assemblage Structure In Black Hills, South Dakota Streams, Luke D. Schultz, Sarah J. Lewis, Katie Nicole Bertrand Dec 2012

Fish Assemblage Structure In Black Hills, South Dakota Streams, Luke D. Schultz, Sarah J. Lewis, Katie Nicole Bertrand

The Prairie Naturalist

Understanding factors structuring fish assemblages in a particular area is valuable to both sport fishery management and native species conservation. Fish assemblages in the Black Hills are unique to South Dakota because they contain economically valuable introduced salmonids as well as native species of conservation need. Our objective was to examine the relationship between fish assemblages and geomorphic and reach-scale habitat features across multiple stream reaches in the Black Hills. Canonical correspondence analysis, a direct gradient ordination analysis, indicated that factors operating at multiple spatial scales interacted to structure fish assemblages. There also was indication of segregation between native species …


Germination Response Of Prairie Dropseed And Hairy Goldaster To Stratification And Temperature, Aurora R. Roemmich, Jack L. Bulter, Gary E. Larson, E. Brent Turnipseed Jun 2012

Germination Response Of Prairie Dropseed And Hairy Goldaster To Stratification And Temperature, Aurora R. Roemmich, Jack L. Bulter, Gary E. Larson, E. Brent Turnipseed

The Prairie Naturalist

The unique vegetation assemblage of the Black Hills in conjunction with the frequent occurrence of natural and anthropogenic disturbances emphasizes the need to use locally adapted native species in a wide variety of restoration efforts. However, a general lack of information regarding germination and propagation requirements for most native plant species has restricted their usage. A better understanding of dormancy and germination patterns for native species will increase their availability and affordability. We selected two common native species, hairy goldaster (Heterotheca villosa) and prairie dropseed (Sporobolus heterolepis), to determine their optimum germination conditions. We hand-harvested seeds during 2007–2009 for use …


Phragmites Australis In South Dakota: Historical Distribution And Environment, Carol A. Johnston, Kayla L. Miller Jun 2011

Phragmites Australis In South Dakota: Historical Distribution And Environment, Carol A. Johnston, Kayla L. Miller

The Prairie Naturalist

Common reed, Phragmites australis, has long been a component of Northern Plains wetlands, but impending invasion by the non-native P. australis haplotype M may displace native haplotypes in the future. To increase understanding of historical Phragmites occurrence, we developed a geographic information system (GIS) protocol to improve the georeferencing of specimens from South Dakota herbaria, and mapped the distribution of Phragmites relative to geology, physiographic regions, and water bodies. There were 91 Phragmites herbarium specimens from South Dakota and adjacent Wyoming. Phragmites collections occurred in nearly all physiographic regions of the state, with concentrations occurring in the Prairie Coteau of …


Resource Selection By Elk At Two Spatial Scales In The Black Hills, South Dakota, Mark A. Rumble, R. Scott Gamo Jun 2011

Resource Selection By Elk At Two Spatial Scales In The Black Hills, South Dakota, Mark A. Rumble, R. Scott Gamo

The Prairie Naturalist

Understanding resource selection by elk (Cervus elaphus) at multiple spatial scales may provide information that will help resolve the increasing number of resource conflicts involving elk. We quantified vegetation at 412 sites where the precise location of elk was known by direct observation and 509 random sites in the Black Hills of South Dakota during 1998– 2001. We obtained stand level variables from geographic information system coverages for a 250 m buffer around elk and random sites. We used classification and regression trees to simultaneously evaluate environmental thresholds of resources selected by feeding and bedded elk at the site and …


Vegetation Trends On A Waste Rock Repository Cap In The Northern Black Hills, Andrew C. Korth, Gary E. Larson, Lan Xu, Thomas E. Schumacher May 2010

Vegetation Trends On A Waste Rock Repository Cap In The Northern Black Hills, Andrew C. Korth, Gary E. Larson, Lan Xu, Thomas E. Schumacher

The Prairie Naturalist

We assessed successional trends, long-term vegetation sustainability, and soil surface protection during the 2005-2007 growing seasons on the 32-ha Ruby Gulch Waste Rock Repository cap. The cap consisted of 150 cm of rock and soil covering a polyethylene membrane which in turn covered mining waste rock in order to prevent leaching of heavy metals and acidic water into streams. Following construction in 2003, a contractor applied a grass-forb seed mixture to provide soil-surface protection especially for steeply sloped portions of the cap. In 2005, we established 56, 1-m2 plots, and 20, 20-m transects to annually measure canopy cover, basal …


Bed Site Selection Of Fawn Pronghorn In Custer State Park, South Dakota, Chad P. Lehman, Jamin D. Hartland, Barbara J. Keller, Joshua J. Millspaugh, Gary C. Brundige Dec 2009

Bed Site Selection Of Fawn Pronghorn In Custer State Park, South Dakota, Chad P. Lehman, Jamin D. Hartland, Barbara J. Keller, Joshua J. Millspaugh, Gary C. Brundige

The Prairie Naturalist

We evaluated pronghorn (Antilocapra americana) fawn bedding site characteristics on a prairie and ponderosa pine (Pinus ponderosa) landscape interface in Custer State Park, South Dakota. We radio-marked 16 adult female pronghorn and collected bed site information from their fawns during 2007~2008. We compared bed site selection with random sites (n = 74) during 2 periods; the early hiding phase when fawns were 1 ~28 days of age (n = 23 bed sites) and the later group phase when fawns were 29~60 days of age (n = 52 bed sites). During the hiding phase fawns selected dry …