Botany Commons^™

Soybean Seed Amino Acid Content Qtl Detected Using The Universal Soy Linkage Panel 1.0 With 1,536 Snps, Benjamin D. Fallen, Catherine N. Hatcher, Fred L. Allen, Dean A. Kopsell, Arnold M. Saxton, Pengyin Chen, Stella K. Kantartzi, P. B. Cregan, D. L. Hyten, Vincent R. Pantalone

Department of Agronomy and Horticulture: Faculty Publications

Soybean [Glycine max (L.) Merr.] is the primary source of meal used in animal feed in the U.S. However, few studies have been conducted to evaluate genomic regions controlling amino acid composition is soybean. Designing soybean seed compositions that will benefit animal production is essential. The objective of this study was to identify genomic regions controlling essential and non-essential amino acid composition in soybean seed proteins. To achieve this objective, 282 F_5:9 recombinant inbred lines (RILs) developed from a cross of Essex × Williams 82 were used. Ground soybean seed samples were analyzed for amino acids and statistically …

Development And Evaluation Of Soysnp50k, A High-Density Genotyping Array For Soybean, Qijian Song, D. L. Hyten, Gaofeng Jia, Charles V. Quigley, Edward W. Fickus, Randall L. Nelson, P. B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

The objective of this research was to identify single nucleotide polymorphisms (SNPs) and to develop an Illumina Infinium BeadChip that contained over 50,000 SNPs from soybean (Glycine max L. Merr.). A total of 498,921,777 reads 35–45 bp in length were obtained from DNA sequence analysis of reduced representation libraries from several soybean accessions which included six cultivated and two wild soybean (G. soja Sieb. et Zucc.) genotypes. These reads were mapped to the soybean whole genome sequence and 209,903 SNPs were identified. After applying several filters, a total of 146,161 of the 209,903 SNPs were determined to be …

The Plant Science Decadal Vision: Response To The Martin Commentary, David Stern, Sally Ann Mackenzie

Department of Agronomy and Horticulture: Faculty Publications

The plant science community is being called upon as never before to carry out research that addresses challenges in food, climate, and health, to educate a populace inundated with science misinformation, and to excite and recruit a new generation of scientists from among that populace, all while investments in basic research are stagnant or even declining in many countries. The Decadal Vision (Plant Science Research Summit, 2013) represents a response from that community, one that launches a meaningful and ongoing dialogue about how best to accomplish these goals. In that spirit, we welcome this thoughtful commentary by Cathie Martin (Martin, …

Chloroplast Division Protein Arc3 Regulates Chloroplast Ftsz-Ring Assembly And Positioning In Arabidopsis Through Interaction With Ftsz2, Min Zhang, Aaron J. Schmitz, Deena K. Kadirjan-Kalbach, Allan D. Terbush, Katherine W. Osteryoung

Department of Agronomy and Horticulture: Faculty Publications

Chloroplast division is initiated by assembly of a mid-chloroplast FtsZ (Z) ring comprising two cytoskeletal proteins, FtsZ1 and FtsZ2. The division-site regulators ACCUMULATION AND REPLICATION OF CHLOROPLASTS3 (ARC3), MinD1, and MinE1 restrict division to the mid-plastid, but their roles are poorly understood. Using genetic analyses in Arabidopsis thaliana, we show that ARC3 mediates division-site placement by inhibiting Z-ring assembly, and MinD1 and MinE1 function through ARC3. ftsZ1 null mutants exhibited some mid-plastid FtsZ2 rings and constrictions, whereas neither constrictions nor FtsZ1 rings were observed in mutants lacking FtsZ2, suggesting FtsZ2 is the primary determinant of Z-ring assembly in vivo. arc3 …

Resource Allocation For Maximizing Prediction Accuracy And Genetic Gain Of Genomic Selection In Plant Breeding: A Simulation Experiment, Aaron Lorenz

Department of Agronomy and Horticulture: Faculty Publications

Allocating resources between population size and replication affects both genetic gain through phenotypic selection and quantitative trait loci detection power and effect estimation accuracy for marker-assisted selection (MAS). It is well known that because alleles are replicated across individuals in quantitative trait loci mapping and MAS, more resources should be allocated to increasing population size compared with phenotypic selection. Genomic selection is a form of MAS using all marker information simultaneously to predict individual genetic values for complex traits and has widely been found superior to MAS. No studies have explicitly investigated how resource allocation decisions affect success of genomic …

Evaluation Of Public Sweet Sorghum A-Lines For Use In Hybrid Production, Jeffrey F. Pedersen, Scott E. Sattler, William F. Anderson

Department of Agronomy and Horticulture: Faculty Publications

A fundamental need for commercialization of sweet sorghum [Sorghum bicolor (L.) Moench] as a bioenergy crop is an adequate seed supply, which will require development of hybrid varieties using dwarf seed-parent lines. A set of six public sweet sorghum A-lines (Dwarf Kansas Sourless, KS9, N36, N38, N39, and N4692) were crossed with a set of six public sweet sorghum cultivars (Brawley, Kansas Collier, Dale, Sugar Drip, Waconia, and Wray). Grain, fiber, and sugar yields were determined, and conversion formulas were applied to estimate ethanol yields. Hybrids were grown in fields at Ithaca, NE, USA, in 1983– 1984 fertilized with …

Yield Gap Analysis—Rationale, Methods And Applications—Introduction To The Special Issue, M.K. Van Ittersum, Kenneth Cassman

Department of Agronomy and Horticulture: Faculty Publications

Yield gap analysis is an increasingly popular concept. It is a powerful method to reveal and understand the biophysical opportunities to meet the projected increase in demand for agricultural products towards 2050, and to support decision making on research, policies, development and investment that is needed. This Special Issue presents the state-of-the-art about concepts, methods and applications of yield gap analysis. The methodological papers emphasize the need for agronomically sound and relevant analyses, from local to global scales. The fourteen papers provide examples of applications to different crops, climate zones and production conditions, at various spatial extents and with different …

Agricultural Innovation To Protect The Environment, Jeffrey Sayer, Kenneth Cassman

Department of Agronomy and Horticulture: Faculty Publications

In a world of 9.5 billion people, global demand for food, fiber, and biofuels has to be met with minimal possible increases in land, water, fossil fuels, and the minerals used to produce fertilizers (1–4). The problem is debated at three levels: first, that agriculture will not be able to produce enough because it will come up against both biophysical and environmental limits that restrict yields (3, 5, 6); second, that the need to expand and intensify agriculture will destroy the broader environmental values of forests, wetlands, marine systems, and their associated biodiversity (7–9); and third, that there are institutional …

New Technologies Reduce Greenhouse Gas Emissions From Nitrogenous Fertilizer In China, Wei-Feng Feng, Zheng-Xia Dou, Pan He, Xiao-Tang Ju, David Powlson, Dave Chadwick, David Norse, Yue-Lai Lu, Ying Zhang, Liang Wu, Xin-Ping Chen, Kenneth Cassman, Fu-Suo Zhang

Department of Agronomy and Horticulture: Faculty Publications

Synthetic nitrogen (N) fertilizer has played a key role in enhancing food production and keeping half of the world’s population adequately fed. However, decades of N fertilizer overuse in many parts of the world have contributed to soil, water, and air pollution; reducing excessive N losses and emissions is a central environmental challenge in the 21st century. China’s participation is essential to global efforts in reducing N-related greenhouse gas (GHG) emissions because China is the largest producer and consumer of fertilizer N. To evaluate the impact of China’s use of N fertilizer, we quantify the carbon footprint of China’s N …

Influence Of Two Herbicides On Soybean Cyst Nematode (Heterodera Glycines) Reproduction On Henbit (Lamium Amplexicaule) Roots, Rodrigo Werle, Mark L. Bernards, Loren J. Giesler, John L. Lindquist

Department of Agronomy and Horticulture: Faculty Publications

Soybean cyst nematode (SCN) is the most yield-limiting pathogen of soybean in the United States. Henbit is a prevalent winter annual weed species in no-till fields and is reported to be an alternative host of SCN. A greenhouse study was conducted to evaluate how the development of SCN on henbit roots was affected by herbicide mode of action and time of herbicide application. Henbit plants were grown in watertight pots placed in a water bath bench that kept soil temperature constant (27 6 1 C) during the study. Ten d after transplanting, pots were inoculated with approximately 1,000 SCN eggs. …

Maternal Environment Effects On Phenolic Defenses In Abutilon Theophrasti Seeds, Brian J. Schutte, Sam E. Wortman, John L. Lindquist, Adam S. Davis

Department of Agronomy and Horticulture: Faculty Publications

A class of phenolic compounds, ortho-dihydroxyphenols (hereafter “o-DHP”), has been implicated with seed survival. Based on expectations of the growth-differentiation balance hypothesis, we predicted that seed o-DHP concentration exhibits a curvilinear response to increasing resource availability in the maternal environment, with maximum o-DHP occurring at moderate resource levels. To test this hypothesis, Abutilon theophrasti seeds were produced under field conditions at two locations. Each location included twelve maternal environments established through factorial combinations of soil compost (+/−), species assemblage (A. theophrasti with and without maize), and soil nitrogen fertilizer (0, 0.5× or 1× local …

Seed Burial Physical Environment Explains Departures From Regional Hydrothermal Model Of Giant Ragweed (Ambrosia Trifida) Seedling Emergence In U.S. Midwest, Adam S. Davis, Sharon Clay, John Cardina, Anita Dille, Frank Forcella, John Lindquist, Christy Sprague

Department of Agronomy and Horticulture: Faculty Publications

Robust predictions of weed seedling emergence from the soil seedbank are needed to aid weed management. A common seed accession (Illinois) of giant ragweed was buried in replicate experimental gardens over 18 site years in Illinois, Michigan, Kansas, Nebraska, Ohio, and South Dakota to examine the importance of site and climate variability by year on seedling emergence. In a nonlinear mixed-effects modeling approach, we used a flexible sigmoidal function (Weibull) to model giant ragweed cumulative seedling emergence in relation to hydrothermal time accumulated in each site-year. An iterative search method across a range of base temperature (T_b) …

Genetic Dissection Of Yield And Its Component Traits Using High-Density Composite Map Of Wheat Chromosome 3a: Bridging Gaps Between Qtls And Underlying Genes, Sachin Rustgi, Mustafa N. Shafqat, Neeraj Kumar, P. Stephen Baenziger, M. Liakat Ali, Ismail M. Dweikat, B. Todd Campbell, Kulvinder Singh Gill

Department of Agronomy and Horticulture: Faculty Publications

Earlier we identified wheat (Triticum aestivum L.) chromosome 3A as a major determinant of grain yield and its component traits. In the present study, a high-density genetic linkage map of 81 chromosome 3A-specific markers was developed to increase the precision of previously identified yield component QTLs, and to map QTLs for biomass-related traits. Many of the previously identified QTLs for yield and its component traits were confirmed and were localized to narrower intervals. Four novel QTLs one each for shoot biomass (Xcfa2262-Xbcd366), total biomass (wPt2740-Xcfa2076), kernels/spike (KPS) (Xwmc664-Xbarc67), and Pseudocercosporella induced lodging ( …

2013 Virginia Wildflower Of The Year: Redbud, Cercis Canadensis, W. John Hayden

Biology Faculty Publications

Redbuds are small trees or shrubs that may attain heights of 10 m or so. Leaves are alternate and two-ranked, simple, entire, deciduous, broadly cordate, with an acute apex, 611 cm long, 712 cm wide, and palmately veined. Petioles have two swollen pulvini, one at its connection with the stem, the other at its junction with the leaf blade.

Redbud Cauliflory: The Inside Story, W. John Hayden

Biology Faculty Publications

One of the most distinctive features of redbuds, Cercis canadensis, the 2013 VNPS Wildflower of the Year, is its production of flowers on mature trunks and major branches, a habit termed cauliflory. Redbud flowers also form on young, one-year old twigs; as explained below, twig- and trunk-borne flowers are parts of a single developmental continuum; twigs bearing flowers eventually becoming trunks and large branches that continue to bear flowers.

Dna Fingerprinting And Anastomosis Grouping Reveal Similar Genetic Diversity In Rhizoctonia Species Infecting Turfgrasses In The Transition Zone Of Usa, B. S. Amaradasa, B. J. Horvath, D. K. Lakshman, S. E. Warnke

Department of Agronomy and Horticulture: Faculty Publications

Rhizoctonia blight is a common and serious disease of many turfgrass species. The most widespread causal agent, Thanatephorus cucumeris (anamorph: R. solani), consists of several genetically different subpopulations. In addition, Waitea circinata varieties zeae, oryzae and circinata (anamorph: Rhizoctonia spp.) also can cause the disease. Accurate identification of the causal pathogen is important for effective management of the disease. It is challenging to distinguish the specific causal pathogen based on disease symptoms or macroscopic and microscopic morphology. Traditional methods such as anastomosis reactions with tester isolates are time consuming and sometimes difficult to interpret. In the present study universally …

Distinguishing Between Yield Advances And Yield Plateaus In Historical Crop Production Trends, Patricio Grassini, Kent M. Eskridge, Kenneth Cassman

Department of Agronomy and Horticulture: Faculty Publications

Food security and land required for food production largely depend on rate of yield gain of major cereal crops. Previous projections of food security are often more optimistic than what historical yield trends would support. Many econometric projections of future food production assume compound rates of yield gain, which are not consistent with historical yield trends. Here we provide a framework to characterize past yield trends and show that linear trajectories adequately describe past yield trends, which means the relative rate of gain decreases over time. Furthermore, there is evidence of yield plateaus or abrupt decreases in rate of yield …

Survey Of Medicinal Herbs Of Central Illinois Prairie And Woodlands, Debra Ann Welch

Masters Theses

Illinois has been named the "Prairie State" for good reason. When the pioneers discovered a vast sea of grasses and forbs, they thought the prairie infertile. However, they soon found out that the blacksoil prairie was composed of a rich diversity of plant species that could provide much of the medical and nutritional needs of everyday life. The medicinal uses of many prairie species have not only been tested throughout history, but today modern science has also discovered their therapeutic importance.

The purpose of this study was to survey prairie species growing in the central Illinois counties of Coles and …

A History Of Place: Using Phytolith Analysis To Discern Holocene Vegetation Change On Sanak Island, Western Gulf Of Alaska, Cricket C. Wilbur

Antioch University Dissertations & Theses

This study investigated a terrestrial climate proxy, phytoliths, as a complimentary approach to documenting the dynamics of present and past vegetation on Sanak Island, the largest island in a small island group in the eastern Aleutian archipelago, and as a new basis by which to interpret Holocene environmental variability in Alaska. A phytolith reference collection was established from 59 selected plant species of maritime tundra belonging to 27 families. The grass species and a sedge species produced abundant phytolith forms whereas the majority of dicotyledons in this study were trace producers of phytoliths. A paleoenvironmental reconstruction from fossil phytoliths recovered …

Functions And Toxicity Of Cadmium In Plants: Recent Advances And Future Prospects, Tuan Anh Tran, Losanka Petrova Popova

Turkish Journal of Botany

Heavy metals are important environmental pollutants and their toxicity is a problem of increasing significance for ecological, evolutionary, nutritional, and environmental reasons. Of all non-essential heavy metals, cadmium (Cd) is perhaps the metal that has attracted the most attention in soil science and plant nutrition due to its potential toxicity to humans, and also its relative mobility in the soil-plant system. This review emphasises Cd toxicity on plants with regards to ecological, physiological, and biochemical aspects. It summarises the toxic symptoms of Cd in plants (i.e. growth and plant development, alterations in photosynthesis, stomatal regulation, enzymatic activities, water relation, mineral …

Allium Cyrilli Complex (Sect. Melanocrommyum) In Turkey, Fatma Neri̇man Özhatay, İlker Genç

Turkish Journal of Botany

As a part of a revisional study of the genus Allium L. sect Melanocrommyum Webb et Berthel. in Turkey, detailed studies were conducted on 3 very closely related and taxonomically difficult species cited in the Flora of Turkey: Allium cyrilli Ten., A. atropurpureum Waldst. & Kit., and A. decipiens Fisch. ex Schult. & Schult. f., to clarify their occurrence in Turkey and their taxonomy. The results of this study show that A. atropurpureum and A. decipiens do not occur in Turkey. On the other hand, A. cyrilli is represented by 3 subspecies of which 2 are new for science: subsp. …

The Revision Of The Genus Oxytropis (Leguminosae) In Turkey, Seher Karaman Erkul, Zeki̇ Aytaç

Turkish Journal of Botany

A taxonomic revision of the genus Oxytropis DC. (Leguminosae) in Turkey is presented. According to the recent literature, the genus had 13 taxa in Turkey; however, at the end of our studies the number was reduced to 11. It was determined that Oxytropis engizekensis Duman & Vural is a synonym of O. persica Boiss., and O. fominii Grossh. is a synonym of O. argyroleuca Bornm. Red List categories of the taxa were re-evaluated according to our results based on IUCN Red List categories. The Red List categories of O. pallasii Pers. and O. pilosa (L.) DC., which are ascribed as …

Soil-Plant Relations In The Annual Gypsophila (Caryopyhllaceae) Taxa Of Turkey, Mustafa Korkmaz, Hasan Özçeli̇k

Turkish Journal of Botany

The soil properties of the annual Gypsophila L. taxa of Turkey and their effects on plant morphology were investigated. The taxa studied were Gypsophila heteropoda Freyn & Sint., G. parva Barkoudah, G. elegans M.Bieb., G. bitlisensis Barkoudah, G. viscosa Murray, G. antari Post & Beauverd, G. muralis L., G. tubulosa (Jaub. & Spach) Boiss., G. confertifolia Hub.-Mor., and G. pilosa Hudson. The soils of the plant taxa were medium textured, sand or sandy-loam, saltless or a little salty, neutral, limy, rich in potassium and with very little phosphorous, and with medium levels of nitrogen and organic matter. G. antari, which …

Heterostyly In Linum Aretioides, Aykut Güvensen, Özcan Seçmen, Serdar Gökhan Şenol

Turkish Journal of Botany

The petal width; sepal, pistil, and stamen lengths; and changes in pollen sizes associated with heterostyly of different morphs in populations of Linum aretioides Boiss. were investigated. Fruit sets were compared in 2 populations and it was investigated whether the Bozdağ population has a heteromorphic incompatibility system. It was observed that the stamen lengths of thrum morphs of Bozdağ were shorter than those of thrum morphs of Babadağ. Pistil lengths of both morphs of Bozdağ were longer than those of morphs of Babadağ. Pollen shapes of both morphs were prolate-spheroidal and subprolate, respectively, in the Bozdağ population and subprolate in …

Physiological And Ultrastructural Studies On Calcium Oxalate Crystal Formation In Some Plants, Fayza Faheed, Ahmed Mazen, Shereen Abd Elmohsen

Turkish Journal of Botany

Results from light, scanning, and transmission electron microscopic examination of CaOx crystal formation in 2 plant species, namely Corchorus olitorius L. and Malva parviflora L., revealed the presence of crystalline deposits. These deposits were of prismatic type in the case of C. olitorius and of druse type in the case of M. parviflora. Ultrastructurally, some differences were observed between crystal idioblast and noncrystal cells. Moreover, the effect of heavy metals and different calcium concentrations on the growth of calcium oxalate crystals in leaves of the 2 plants was investigated. Different analytical techniques were used to determine the influence of exogenous …

Stimulation Of The Production Of Hypericins In In Vitro Seedlings Of Hypericum Adenotrichum By Some Biotic Elicitors, Ömer Yamaner, Bengi̇ Erdağ, Cengi̇z Gökbulut

Turkish Journal of Botany

The goal of this work was to study the stimulating effects of mannan and pectin on the biosynthesis of hypericins in in vitro seedlings of Hypericum adenotrichum Spach. Seedlings of H. adenotrichum were grown on a modified MS medium containing mannan (10, 50, and 100 mg/L) or pectin (10, 50, and 100 mg/L) for 15 and 30 days. Seedlings of H. adenotrichum were extracted with methanol. The methanol extracts of the seedlings were analysed by HPLC to investigate the changes in hypericin and pseudohypericin levels. The best results were obtained by exposure to 50 mg/L mannan or pectin for 15 …

A New Alien Record For The Flora Of Turkey: Sigesbeckia Pubescens (Compositae), Fergan Karaer, Sali̇h Terzi̇oğlu

Turkish Journal of Botany

An Asian species, Sigesbeckia pubescens (Makino) Makino (Compositae), is recorded as an alien for the flora of Turkey. The specimens were collected from A8 Artvin and a distribution map for the species is provided.

Dianthus Vanensis (Caryophyllaceae), A New Species From Turkey, Ahmet İlçi̇m, Lütfi̇ Behçet, Muzaffer Mükemre

Turkish Journal of Botany

Dianthus vanensis Behçet & İlçim is described as a new species. It is confined to Çatak District (Van) in Eastern Anatolia, Turkey. The diagnostic characters and taxonomic comments on the species are given. Notes are also presented on its ecology. A distribution map of new and related species is also provided.

Comparative Foliar Micromorphological Studies Of Some Bauhinia (Leguminosae) Species, Susy Albert, Bhavna Sharma

Turkish Journal of Botany

A comparative foliar epidermal micromorphology of 5 species of Bauhinia L. belonging to family Leguminosae (Fabaceae) was conducted with a view to elucidating their taxonomic significance and presenting complementary data to aid in the identification of the species. The epidermal cells in all species were polygonal with straight walls except in B. tomentosa L., which had an undulating outline. The stoma types were mainly anisocytic, anomocytic, and paracytic. Among the 5 species, B. blakeana L. was hypostomatic with anisocytic and paracytic stomata. Stomatal indices, frequencies, and sizes were determined. The frequency of stomata differed markedly between different species, with the …

Archaeobotanical Studies At The Urartian Site Of Ayanis In Van Province, Eastern Turkey, Tuğba Solmaz, Emel Oybak Dönmez

Turkish Journal of Botany

Archaeobotanical macro remains recovered from the Ayanis fortress and the outer town of the Urartian period of the Iron Age (685-645 BC), located in the area of Van (Turkey), were investigated. Most of the remains were charred due to fire. Large quantities of Hordeum vulgare L. (hulled barley), Panicum miliaceum L. (broomcorn millet), and Setaria italica (L.) P.Beauvois (foxtail millet) were found at the study site, indicating the storage of agricultural surplus. Other types of cereal remains were also recorded, including Triticum aestivum L. (bread wheat) and Secale cereale L. (rye). Ground wheat grains were also recovered and their starch …