Botany Commons^™

Developmental Changes And H+-Atpase Co-Localization In Nepenthes Alata Peristomal Nectary Glands, Alison Carini

Biology Honors Papers

Nepenthes alata is an east-Asian species of tropical carnivorous plant more commonly known as a pitcher plant. The pitcher is a modified epiascidiate leaf used to passively capture insects as nutritious supplements to its diet. In this study, the ultrastructure of different age stages of peristomal extrafloral nectary glands were surveyed, selected ages were immunolabeled for H+-ATPases. All nectary cells had numerous mitochondria, endoplasmic reticulum, Golgi bodies, plastids, and vacuoles in a dense cytoplasm consistent with an active secretory system. The larger class of immature pitchers (approx. 4 cm in diameter, lid closed) had budding structures affecting the plasma membrane …

"Over The River And Through The Woods": An Analysis Of Understory And Canopy Plant Diversity In Urban Riparian Forests, Carlisle R. Evans Peck

Urban Forest Project

As population growth explodes and urban areas expand, studying the ecology of urban areas has become increasingly important. Urban development has been shown to drastically alter native habitats and to severely degrade biodiversity. However, urban landscapes also hold the potential to harbor and support valuable biodiversity especially if managed correctly. We studied the understory herbaceous plant and overstory tree canopy diversity of eight forested ravines in the small cities of Rock Island and Moline IL surrounded by a range of urban development intensity. The goal of the project was to determine whether or not the composition of the plant communities …

Plants Of The Humboldt State University Campus, James P. Smith Jr

Botanical Studies

No abstract provided.

Smith Falls State Park Forest Enhancement Project For Aspen, Mike Groenewold

Nebraska Game and Parks Commission: White Papers, Conference Presentations, and Manuscripts

A 76-mile stretch of the middle Niobrara River, which includes Smith Falls State Park, is designated as a National Scenic River. This reach of the river is referred to as the biological crossroads of the Midwest as the river’s deeply incised valley is the intersection of a diverse mix of plant communities including several forest and prairie types. The mix of forests supports a rich diversity of species including rare plants such as glacial relict aspen and paper birch.

In recent decades eastern red cedar and ponderosa pine densities have increased substantially in the middle Niobrara River due to fire …

The Effect Of Pin Reduction In Populus: The Search For The Missing Phenotype, Samuel Norcross

Biology Honors Papers

The plant hormone auxin is involved in virtually every aspect of plant growth and development. Because of its vital role in plant physiology, it is transported through controlled mechanisms. The PIN family of efflux carrier proteins are highly involved in this transport, shuttling molecules of auxin from cell to cell. This PIN-driven transport of auxin guides the differentiation of plant vasculature. In this study, I used a clonally-propagated line of the woody plant species Populus tremula x alba that had been genetically altered to induce an RNAi response against genes coding for the PIN proteins. These plants were shown to …

Synthesis And Future Directions: What Have Harsh Environments Taught Us About Ecology, Evolution, Conservation And Restoration, Nishanta Rajakaruna, R. S. Boyd, T. B. Harris

Faculty Publications, Biological Sciences

No abstract provided.

Additional Lichen Records And Mineralogical Data From Metal-Contaminated Sites In Maine, Ian D. Medeiros, Alan M. Fryday, N. Rajakaruna

Biological Sciences

Geochemistry and mineralogy of rocks play important roles in the occurrence of individual lichen species and assembly of lichen communities. Whereas lichens of metal-enriched settings have been a focus of study for many decades, only a few such lichen inventories exist for North America. We reexamined the lichen biota of Pine Hill, a serpentine outcrop on Little Deer Isle, Maine and Callahan Mine, a copper-and zinc-enriched Superfund site in Brooksville, Maine by conducting additional field surveys and reexamining unidentified taxa from previous collections. To better characterize the substrates upon which the lichens were found, we conducted elemental analyses via x-ray …

The Origin And Biosynthesis Of The Benzenoid Moiety Of Ubiquinone (Coenzyme Q) In Arabidopsis, Anna Block, Joshua R. Widhalm, Abdelhak Fatihi, Rebecca E. Cahoon, Yashitola Wamboldt, Christian Elowsky, Sally Ann Mackenzie, Edgar B. Cahoon, Clint Chapple, Natalia Dudareva, Gilles J. C. Basset

Center for Plant Science Innovation: Faculty Publications

It is not known how plants make the benzenoid ring of ubiquinone, a vital respiratory cofactor. Here, we demonstrate that Arabidopsis thaliana uses for that purpose two separate biosynthetic branches stemming from phenylalanine and tyrosine. Gene network modeling and characterization of T-DNA mutants indicated that acyl-activating enzyme encoded by At4g19010 contributes to the biosynthesis of ubiquinone specifically from phenylalanine. CoA ligase assays verified that At4g19010 prefers para-coumarate, ferulate, and caffeate as substrates. Feeding experiments demonstrated that the at4g19010 knockout cannot use para-coumarate for ubiquinone biosynthesis and that the supply of 4-hydroxybenzoate, the side-chain shortened version of para-coumarate, can bypass this …

Botanists In The Canyonlands Of The Colorado Plateau – 1950–1983 & Prior, Stanley L. Welsh, Glen Moore

Books by Faculty of the Monte L. Bean Life Science Museum

Abstract

This paper provides an overview of botanical investigations in southeastern Utah, but is not so-restricted geographically. It grew out of the discovery of decades-old manuscripts on the flora of what became Canyonlands National Park in 1964, but from those typescript copies the coverage grew outward geographically and backward in time to the earliest inhabitants of what is today known as the Four Corners Region of the American Southwest. Reviewed is the account of utilization of the region and its natural resources by aboriginal inhabitants who were familiar with all of it. That early, and to an extent, continuous occupation …

Hanging Gardens Of The Colorado: Jewels In The Crown—Canyonlands Versus Zion Canyon, Stanley L. Welsh

Books by Faculty of the Monte L. Bean Life Science Museum

Abstract

Descriptions and types of Utah’s hanging gardens. This work includes a comparison of hanging gardens in Canyonlands versus Zion Canyon, as well as the plant and animal assemblages found there. Five types of gardens and alcoves are defined and the different types found in both national parks are described. Maps of hanging garden locations and extensive photographs of the flora and fauna are provided.

Table of Contents (abridged)

Prolog

Canyonlands Gardens

Geomorphology

Types of Gardens and Alcoves

Zion Canyon Gardens

Terrace-type Gardens

Plant Communities

Stream Courses

Geographic Affinities of Hanging Gardens

Restricted or Unusual Plants

Plant Succession

Appendix I: …

Letter From The Dean, Michael Vayda

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 15 2014, Several Authors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Bacon's Swamp- Ghost Of A Central Indiana Natural Area Past, Rebecca W. Dolan

Scholarship and Professional Work - LAS

Bacon’s Swamp was identified in the 1920s as a ca. 12 ha glacial kettle lake bog system at the southernmost limits of these habitats in Indiana. Located just 9.6 km from the center of Indianapolis, the site was all but destroyed in the mid-20th century by urban expansion. Prior to habitat conversion at the site, Bacon’s Swamp was a frequent location for Butler University ecology class field trips and student research projects. Herbarium specimens and published inventory records allow for analysis of the historical vegetation of Bacon’s Swamp using modern techniques. Floristic Quality Assessment applied to these historical records reveals …

The Complete Plastid Genome Sequence Of Iris Gatesii (Section Oncocyclus), A Bearded Species From Southeastern Turkey, Carol A. Wilson

Aliso: A Journal of Systematic and Floristic Botany

Iris gatesii is a rare bearded species in subgenus Iris section Oncocyclus that occurs in steppe communities of southeastern Turkey. This species is not commonly cultivated, but related species in section Iris are economically important horticultural plants. The complete plastid genome is reported for I. gatesii based on data generated using the Illumina HiSeq platform and is compared to genomes of 16 species selected from across the monocotyledons. This Iris genome is the only known plastid genome available for order Asparagales that is not from Orchidaceae. The I. gatesii plastid genome, unlike orchid genomes, has little gene loss and rearrangement …

The Revision Of The Section Alopecuroidei Of The Genus Astragalus (Fabaceae) In Turkey, Hasan Akan, Zeki̇ Aytaç

Turkish Journal of Botany

In this research, the morphological, anatomical, palynological, and cytological characteristics of the section Alopecuroidei DC. species belonging to genus Astragalus L. in Turkey were studied. As a result of this study, the members of the Alopecuroidei section represented by 22 taxa were evaluated under 24 taxa. While 3 taxa were reduced to synonyms, 4 new taxa have been added to the literature. Those are Astragalus aytatchii Akan & Civelek, A. ovabaghensis Akan & Aytaç, A. bahcesarayensis Akan, Fırat & Ekici, and A. ekicii H.Duman & Akan. In addition, it was determined that A. edmondi (Kuntze) Sheld. and A. maximus Willd. …

Tomato Fruit Quality As Influenced By Salinity And Nitric Oxide, Hala Ezzat Mohamed Ali, Ghada Saber Mohamed Ismail

Turkish Journal of Botany

The impact of salinity (measured by adding 100 mM of NaCl to the nutrient solution) and spraying with sodium nitroprusside (10 µM of SNP, NO source) on fruit quality of tomato (Super Strain B) plants grown under field conditions was studied. Irrigation with salinised nutrient solution alone resulted in a significant suppression in fruit fresh and dry biomass, length, diameter, and volume as well as \beta-carotene and lycopene contents. This decrease was accompanied by a significant increase in Na accumulation, total alkaloids, and antioxidants, including total phenolics and flavonoids, and reduced ascorbic acid (ASA) content. Similar to total phenolics and …

Morphology And Genetic Affinities Of A Novel Chattonella Isolate (Raphidophyceae) Isolated From Iran’S South Coast (Oman Sea), Gilan Attaran Fariman, Christopher John Stanley Bolch

Turkish Journal of Botany

The morphology and genetic affinity of a novel raphidophyte belonging to the genus Chattonella Biecheler is described for the first time from the Oman Sea along the south-east coast of Iran. While morphologically very similar to Chattonella subsalsa Biecheler, the Iranian isolates contain a distinct red eyespot. A comparison of LSU-rDNA and rDNA-ITS show that the Iranian isolate is genetically distinct from other Chattonella subsalsa strains isolated from across a wide global range and indicates that the Iranian isolates represent a distinct species related to Chattonella subsalsa.

Micropropagation Of Erodium Sibthorpianum Subsp. Sibthorpianum, An Endemic Threatened Species Of Uludağ Mountain (Bursa-Turkey), Betül Akin, İsmai̇l Kocaçalişkan, Gürcan Güleryüz

Turkish Journal of Botany

Uludağ Mountain is one of the Important Plant Areas of Turkey. Its native plant species are threatened by various human and environmental factors. In this study, 2 different micropropagation techniques, with Murashige Skoog (MS) and modified MS (ModMS) media, were used for Erodium sibthorpianum Boiss. subsp. sibthorpianum. Mineral composition was developed according to the plant requirements. Shoot tips were cultured on these media. Seedlings, obtained from in vitro germinated seeds, were used as explant sources in micropropagation studies. The highest percentage of shoot induction (11.33 shoots/explant) was determined in 1 ppm 6-benzyl amino purine and plant growth regulator-free MS medium …

Testing The Utility Of Matk And Its Dna Regions For Discrimination Of Allium Species, Meryem İpek, Ahmet İpek, Philipp W. Simon

Turkish Journal of Botany

Molecular phylogenetic analysis of the genus Allium L. has been mainly based on the nucleotide sequences of the ITS region. In 2009, matK and rbcL were accepted as a 2-locus DNA barcode to classify plant species by the Consortium for the Barcode of Life Plant Working Group. The matK region was chosen as a DNA barcode because of its effective species discrimination power, high quality sequence recovery, and easy experimental procedures. Integration of matK sequences into Allium phylogeny could improve phylogenetic reconstruction of this genus. This study was carried out to test the utility of nucleotide sequences of matK for …

Quantitative Trait Locus Analysis Of Unsaturated Fatty Acids In A Recombinant Inbred Population Of Soybean, Xianzhi Wang, Guo-Liang Jiang, Marci Green, Roy A. Scott, D. L. Hyten, P. B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

Soybean [Glycine max (L.) Merr.] is an important oilseed crop which produces about 30 %of the world’s edible vegetable oil. The quality of soybean oil is determined by its fatty acid composition. Soybean oil high in oleic and low in linolenic fatty acids is desirable for human consumption and other uses. The objectives of this study were to identify quantitative trait loci (QTLs) for unsaturated fatty acids and to evaluate the genetic effects of single QTL and QTL combinations in soybean. A population of recombinant inbred lines derived from the cross of SD02-4-59 X A02-381100 was evaluated for fatty …

Detection And Confirmation Of Quantitative Trait Loci For Soybean Seed Isoflavones, Christopher J. Smallwood, Catherine N. Nyinyi, Dean A. Kopsell, Carl E. Sams, Dennis R. West, Pengyin Chen, Stella K. Kantartzi, P. B. Cregan, D. L. Hyten, Vincent R. Pantalone

Department of Agronomy and Horticulture: Faculty Publications

Interest in soybean [Glycine max (L.) Merr.] isoflavones has increased in recent years owing to numerous reported health benefits. Consequently, quantitative trait loci (QTL) detection for marker-assisted breeding for isoflavones is being examined for genetic gains. This study sought to detect QTL for soybean isoflavones in a population of 274 recombinant inbred lines derived from a cross between ‘Essex’ and ‘Williams 82’ that were subdivided and tested by maturity (early, mid, and late). The field tests were conducted in three environments in 2009 (Knoxville, TN; Harrisburg, IL; and Stuttgart, AR). The population was genotyped with 480 polymorphic single nucleotide …

Transcriptomic And Physiological Characterization Of The Fefe Mutant Of Melon (Cucumis Melo) Reveals New Aspects Of Iron-Copper Crosstalk, Brian M. Waters, Samuel A. Mcinturf, Keenan Amundsen

Department of Agronomy and Horticulture: Faculty Publications

Iron (Fe) and copper (Cu) homeostasis are tightly linked across biology. In previous work, Fe deficiency interacted with Cu-regulated genes and stimulated Cu accumulation. The C940-fe (fefe) Fe-uptake mutant of melon (Cucumis melo) was characterized, and the fefe mutant was used to test whether Cu deficiency could stimulate Fe uptake. Wild-type and fefe mutant transcriptomes were determined by RNA-seq under Fe and Cu deficiency. FeFe-regulated genes included core Fe uptake, metal homeostasis, and transcription factor genes. Numerous genes were regulated by both Fe and Cu. The fefe mutant was rescued by high Fe or by …

Arabidopsis Lipins, Pdat1 Acyltransferase, And Sdp1 Triacylglycerol Lipase Synergistically Direct Fatty Acids Toward Β-Oxidation, Thereby Maintaining Membrane Lipid Homeostasis, Jilian Fan, Chengshi Yan, Rebecca Roston, John Shanklin, Changcheng Xu

Department of Agronomy and Horticulture: Faculty Publications

Triacylglycerol (TAG) metabolism is a key aspect of intracellular lipid homeostasis in yeast and mammals, but its role in vegetative tissues of plants remains poorly defined. We previously reported that PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE1 (PDAT1) is crucial for diverting fatty acids (FAs) from membrane lipid synthesis to TAG and thereby protecting against FA-induced cell death in leaves. Here, we show that overexpression of PDAT1 enhances the turnover of FAs in leaf lipids. Using the trigalactosyldiacylglycerol1-1 (tgd1-1) mutant, which displays substantially enhanced PDAT1- mediated TAG synthesis, we demonstrate that disruption of SUGAR-DEPENDENT1 (SDP1) TAG lipase or PEROXISOMAL TRANSPORTER1 (PXA1) severely decreases …

Nelsonioideae (Lamiales: Acanthaceae): Revision Of Genera And Catalog Of Species, Thomas F. Daniel, Lucinda A. Mcdade

Aliso: A Journal of Systematic and Floristic Botany

A taxonomic account of Acanthaceae subfamily Nelsonioideae based on morphological and phylogenetic data treats five genera with 172 species: Anisosepalum (3), Elytraria (21), Nelsonia (2), Saintpauliopsis (1), and Staurogyne (145). Two other currently recognized genera, Gynocraterium and Ophiorrhiziphyllon, are included within Staurogyne, and the new combinations, Staurogyne guianensis and S. macrobotrya, are proposed. Probable apomorphic and other diagnostic macro- and micromorphological characters are discussed relative to the subfamily and genera. Characters of the inflorescence, androecium (especially pollen), and seed show important phylogenetic and diagnostic signal. A key to genera, generic descriptions and discussions, illustrations, and distribution maps …

A Reference Genome For Common Bean And Genome-Wide Analysis Of Dual Domestications, Jeremy Schmutz, Phillip E. Mcclean, Sujan Mamidi, G. Albert Wu, Steven B. Cannon, Jane Grimwood, Jerry Jenkins, Shengqiang Shu, Qijian Song, Carolina Chavarro, Mirayda Torres-Torres, Valerie Geffroy, Samira Mafi Moghaddam, Dongying Gao, Brian Abernathy, Kerrie Barry, Matthew Blair, Mark A. Brick, Mansi Chovatia, Paul Gepts, David M. Goodstein, Michael Gonzales, Uffe Hellsten, D. L. Hyten, Gaofeng Jia, James D. Kelly, Dave Kudrna, Rian Lee, Manon M.S. Richard, Phillip N. Miklas, Juan M. Osorno, Josiane Rodrigues, Vincent Thareau, Carlos A. Urrea Florez, Mei Wang, Yeisoo Yu, Ming Zhang, Rod A. Wing, P. B. Cregan, Daniel S. Rokhsar, Scott A. Jackson

Department of Agronomy and Horticulture: Faculty Publications

Common bean (Phaseolus vulgaris L.) is the most important grain legume for human consumption and has a role in sustainable agriculture owing to its ability to fix atmospheric nitrogen. We assembled 473 Mb of the 587-Mb genome and genetically anchored 98% of this sequence in 11 chromosome-scale pseudomolecules. We compared the genome for the common bean against the soybean genome to find changes in soybean resulting from polyploidy. Using resequencing of 60 wild individuals and 100 landraces from the genetically differentiated Mesoamerican and Andean gene pools, we confirmed 2 independent domestications from genetic pools that diverged before human colonization. …

Genome Size And Phylogenetic Relationships Between The Tunisian Species Of The Genus Calligonum (Polygonaceae), Hassen Gouja, Alfredo Garcia Fernández, Teresa Garnatje, Aly Raies, Mohamed Neffati

Turkish Journal of Botany

The species of the genus Calligonum L. (Polygonaceae) that appear in Tunisian deserts play an important role in maintaining local ecosystems and supply important natural resources in these regions. In this study, 31 individuals belonging to the 3 hypothetical species of the genus Calligonum (Calligonum arich Le Houér., Calligonum azel Maire, and Calligonum comosum L'Hér.) were collected from 12 populations in 6 localities of the Tunisian desert and examined to assess the relationship between species. Phylogenetic analyses using 1 nuclear (ITS) and 2 plastid regions (trnL-trnF and rbcL) and genome size assessments are used in this study to evaluate the …

Campanula Alisan-Kilincii (Campanulaceae), A New Species From Eastern Anatolia, Turkey, Hasan Yildirim, Serdar Gökhan Şenol

Turkish Journal of Botany

Campanula alisan-kilincii Yıldırım & Şenol (Campanulaceae) is described and illustrated as a new species from Malatya Province in eastern Anatolia, Turkey. The new species belongs to the section Rupestres, based on morphological features. It is morphologically similar to Campanula quercetorum and C. strigillosa but clearly differs from them based on the morphological differences presented in the species description. In addition, the conservation status, the distribution map, and notes on the biogeography and ecology of the new species are given.

Glycine Betaine-Induced Lead Toxicity Tolerance Related To Elevated Photosynthesis, Antioxidant Enzymes Suppressed Lead Uptake And Oxidative Stress In Cotton, Saima Aslam Bharwana, Shafaqat Ali, Muhammad Ahsan Farooq, Naeem Iqbal, Amjad Hameed, Farhat Abbas, Muhammad Sajid Aqeel Ahmad

Turkish Journal of Botany

Anthropogenic activities contaminate soils with heavy metal concentrations including lead (Pb), cadmium (Cd), copper (Cu), and chromium (Cr). Pb has higher potential for ready accumulation, sedimentation, and poisoning of the soil than other heavy metals. The present study was conducted to induce Pb tolerance, in solution culture-grown cotton, by exogenous glycinebetaine (GB) application using 3 levels of Pb (0, 50, and 100 µm) and 2 GB levels (0 and 1 mM). The results revealed that Pb stress decreased gas exchange characteristics (net photosynthetic rate, stomatal conductance, transpiration rate, water use efficiency, chlorophyll, carotenoids, and SPAD value) and the performance of …

Lichenized And Lichenicolous Fungi Of Gevne Valley (Konya, Antalya), Mustafa Kocakaya, Mehmet Gökhan Halici, Ahmet Aksoy

Turkish Journal of Botany

The lichen and lichenicolous fungi of Gevne Valley in the provinces of Konya and Antalya are presented. From 47 localities, 215 lichen and 18 lichenicolous fungi are reported for a total 233 infrageneric taxa. Four taxa are new records for Turkey: Lecanora flowersiana H.Magn., L. invadens H.Magn., Psora cerebriformis W.A.Weber, and Rinodina colobinoides (Nyl.) Zahlbr. Detailed information on these 4 taxa is provided along with photographs.

Studies On New Fungal Records For Turkish Mycota From Trabzon, Ertuğrul Sesli̇

Turkish Journal of Botany

Fungal specimens were collected and photographed between 2010 and 2013 around Trabzon. Ecological observations were made in the field, and the structures of pileipellis, basidia, spores, marginal cells, and hyphae were illuminated in the laboratory. Some dried specimens were compared with British collections in the Royal Botanic Gardens, Kew. Finally, Cortinarius parevernius Rob. Henry, Cortinarius tortuosus (Fr.) Fr., Entoloma euchroum (Pers.) Donk, Entoloma lividoalbum (Kühner & Romagn.) Kubicka, Hygrophoropsis morganii (Peck) H.E.Bigelow, Phaeocollybia festiva (Fr.) R.Heim, and Tricholoma viridilutescens M.M.Moser were recorded for the first time for the Turkish Mycota. The new records were illustrated, briefly described, and discussed.