Botany Commons^™

Conventional Method Comparison Data (Ves And Hess), Margaret E. Maloney, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

No abstract provided.

Herbaceous Vegetation: June, Julia I. Chapman, Margaret E. Maloney, Erin C. Rowekamp, Mitchell J. Kukla, Sean D. Mahoney, Eric B. Borth, Ryan W. Mcewan

Data Files

June

Lonicera Maackii Leaf Feeding Tests: Survival, Growth, Loss Of Leaf Mass, Kevin W. Custer, Julia I. Chapman, Ryan W. Mcewan

Data Files

Lymnaea stagnalis, Hyalella Azteca, and Allocapnia spp.

Lonicera Maackii Leaf Leachate Toxicity: Physicochemical Data, Eric B. Borth, Kevin W. Custer, Julia I. Chapman, Ryan W. Mcewan

Data Files

Lymnaea stagnalis and Hyalella azteca

“Primitive” Wood Characters Are Adaptive: Examples From Paracryphiaceae, Sherwin Carlquist

Aliso: A Journal of Systematic and Floristic Botany

Why plants rich in plesiomorphic (“primitive”) features are alive today is a question that receives little comment. Apomorphies in angiosperms are often interpreted as valuable adaptations. However, both apomorphies and plesiomorphies can be keyed to ecological and physiological features. If a particular habitat remains little modified for long periods of geological time, plesiomorphic features should theoretically persist. The Bailey-Frost-Kribs correlations (usually between tracheary element length and character states in other wood features), deemed useful in their day, did not include adaptation to ecology, nor did they have the advantages that molecular-based phylogenies bring to us today. Montane cloud forests or …

The Vascular Flora Of The Red River Gorge In Powell, Menifee, And Wolfe Counties Kentucky, Thomas Steele Mcfadden

Online Theses and Dissertations

The Red River Gorge (RRG) is a 26,283 ha natural area within Menifee, Powell, and Wolfe counties of Kentucky. This area is in the Cumberland Plateau Physiographic Section which is a southern subsection of the Appalachian Plateau Physiographic Province. It is a mecca of outdoor recreation, hosting thousands of visitors each year, while also being home to a unique flora worthy of continued protection. A vascular flora was conducted between the fall of 2016 and the summer of 2018. Additional vouchers donated by Dr. Ross C. Clark and the Stanton Ranger District office, as well as vouchers deposited at regional …

Finding Aid To The Collection Of Louise Helen Coburn Materials, Louise Helen Coburn, Colby College Special Collections

Finding Aids

Louise Helen Coburn was born in Skowhegan, Maine on September 1, 1856, daughter of Stephen Coburn and Helen Sophia Miller. Coburn was Colby's second female graduate (after Mary Low Carver) in 1877, and graduated with Phi Beta Kappa honors. She also later received an honorary Litt. D. degree from Colby in 1914. Coburn's family was deeply tied to Colby College. Her father Stephen graduated in 1839, and the Coburn family was critical to Colby's early development as benefactors. Coburn was a co-founder, along with Mary Low Carver and others, of the Sigma Kappa Sorority. Coburn also later attended the Harvard …

Optimising The Identification Of Causal Variants Across Varying Genetic Architectures In Crops, Chenyong Miao, Jinliang Yang, James C. Schnable

Department of Agronomy and Horticulture: Faculty Publications

Association studies use statistical links between genetic markers and the phenotype variation across many individuals to identify genes controlling variation in the target phenotype. However, this approach, particularly conducted on a genome-wide scale (GWAS), has limited power to identify the genes responsible for variation in traits controlled by complex genetic architectures. In this study, we employ real-world genotype datasets from four crop species with distinct minor allele frequency distributions, population structures and linkage disequilibrium patterns. We demonstrate that different GWAS statistical approaches provide favourable trade-offs between power and accuracy for traits controlled by different types of genetic architectures. FarmCPU provides …

Transcriptional Reprogramming Of Legume Genomes: Perspective And Challenges Associated With Single-Cell And Single Cell-Type Approaches During Nodule Development, Marc Libault

Department of Agronomy and Horticulture: Faculty Publications

Transcriptomic approaches revealed thousands of genes differentially or specifically expressed during nodulation, a biological process resulting from the symbiosis between leguminous plant roots and rhizobia, atmospheric nitrogen-fixing symbiotic bacteria. Ultimately, nodulation will lead to the development of a new root organ, the nodule. Through functional genomic studies, plant transcriptomes have been used by scientists to reveal plant genes potentially controlling nodulation. However, it is important to acknowledge that the physiology, transcriptomic programs, and biochemical properties of the plant cells involved in nodulation are continuously regulated. They also differ between the different cell-types composing the nodules. To generate a more accurate …

First Case Of Glufosinate-Resistant Rigid Ryegrass (Lolium Rigidum Gaud.) In Greece, Ilias S. Travlos, Nikolina Cheimona, Rafael De Prado, Amit J. Jhala, Demosthenis Chachalis, Eleni Tani

Department of Agronomy and Horticulture: Faculty Publications

Repeated applications of the same herbicide(s), which are characterized by the same mode of action, increase selection pressure, which in turn favours the evolution of herbicide-resistant weeds. Glufosinate is a broad-spectrum non-selective herbicide being used for weed control for many years around the world. Rigid ryegrass (Lolium rigidum Gaud.) is an economically important grass weed in Greece. Recent complaints by growers about control failure of rigid ryegrass with glufosinate require further investigation and have been the basis of this study. The objectives of this study were to confirm the existence of glufosinate-resistant L. rigidum in Greece and evaluate the …

Empowerment And Tech Adoption: Introducing The Treadle Pump Triggers Farmers’ Innovation In Eastern Ethiopia, Shimelis Beyene, Teshome H. Regassa, Belaineh Legesse, Martha Mamo, Tsegaye Tadesse

Department of Agronomy and Horticulture: Faculty Publications

In 2013, thirty-eight treadle pumps (TPs) were installed as low-cost technology introduction for small-scale irrigation in eastern Ethiopia. This pilot project also trained six farmers on tube well excavation, as well as the installation and maintenance of pumps. In June 2015, researchers visited nine of the thirty-eight TP villages and found only two TPs functioning as originally installed. The rest were replaced with a new technology developed by the trained farmers. Farmers, empowered by training, gained more control in developing technology options tailored to local needs and conditions of their communities. Adopters of the new technology stated that the limited …

Beyond The Plot: Technology Extrapolation Domains For Scaling Out Agronomic Science, Juan I. Rattalino Edreira, Kenneth G. Cassman, Zvi Hochman, Martin K. Van Ittersum, Lenny Van Bussel, Lieven Claessens, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Ensuring an adequate food supply in systems that protect environmental quality and conserve natural resources requires productive and resource-efficient cropping systems on existing farmland.Meeting this challenge will be difficult without a robust spatial framework that facilitates rapid evaluation and scaling-out of currently available and emerging technologies. Here we develop a global spatial framework to delineate ‘technology extrapolation domains’ based on key climate and soil factors that govern crop yields and yield stability in rainfed crop production. The proposed framework adequately represents the spatial pattern of crop yields and stability when evaluated over the data-rich US Corn Belt. It also facilitates …

Is Conservation Agriculture A Potential Option For Cereal-Based Sustainable Farming System In The Eastern Indo-Gangetic Plains Of Nepal?, Dipendra Pokharel, Raj Kant Jha, Thakur Prasad Tiwari, Mahesh Kumar Gathala, Hari Krishna Shrestha, Dinesh Panday

Department of Agronomy and Horticulture: Faculty Publications

A decline in land and water productivity, increase in the cost of cultivation, and labor-intensive practices are affecting the cereal-based farming system in Nepal, particularly in the Indo-Gangetic Plains (IGP). Conservation agriculture (CA) practices have been found to be the climate-, energy-, and labor-smart and sustainable agricultural production technologies. Sustainable and Resilient Farming System Intensification (SRFSI) has been working since 2014 in response to the sustainability of the cereal-based (rice–wheat and rice–maize) farming in Sunsari and Dhanusha districts of Nepal. This study was conducted to assess the adoption and scaling up of CA in addition to input usage, production, net …

Impact Of Drought On Chemical Composition And Sugar Yields From Dilute-Acid Pretreatment And Enzymatic Hydrolysis Of Miscanthus, A Tall Fescue Mixture, And Switchgrass, Amber Hoover, Rachel Emerson, Allison Ray, Daniel Stevens, Sabrina Morgan, Marnie Cortez, Robert Kallenbach, Matthew Sousek, Rodney Farris, Dayna Daubaras

Department of Agronomy and Horticulture: Faculty Publications

Environmental factors like drought impact the quality of biomass entering a bioconversion process. Drought often reduces the sugar content in lignocellulosic biomass, which could have economic impacts, particularly when compounded with losses in dry biomass yield; however, the effects on conversion efficiency are not completely understood. This study investigated how drought may impact biomass composition and sugar yields from dilute-acid pretreatment and enzymatic hydrolysis of Miscanthus, a tall fescue mixture, and switchgrass from Nebraska, Missouri, and Oklahoma, respectively, grown as part of Regional Feedstock Partnership field trials. Samples were grown and harvested in 2010 during non-drought conditions and in …

Impaired Phloem Loading In Zmsweet13a,B,C Sucrose Transporter Triple Knock-Out Mutants In Zea Mays, Margaret Bezrutczyk, Thomas Hartwig, Marc Horschman, Si Nian Char, Jinliang Yang, Bing Yang, Wolf B. Frommer, Davide Sosso

Department of Agronomy and Horticulture: Faculty Publications

Crop yield is critical for human nutrition, yet the underlying machinery that ultimately determines yield potential is still not understood. Crop productivity under ideal conditions is determined by the efficiency with which plants intercept light, convert it into chemical energy, translocate photosynthates and convert these to storage products in harvestable organs (Zhu et al., 2010). In many crops, sucrose is the primary form for translocation inside the conduit (i.e. the phloem). A combination of SWEETmediated efflux from phloem parenchyma and subsequent secondary active sucrose import by SUT sucrose/H+ symporters is thought to create the driving force for pressure gradient-driven …

Tetracycline And Sulfonamide Antibiotic Resistance Genes In Soils From Nebraska Organic Farming Operations, Marylynn Cadena, Lisa M. Durso, Daniel N. Miller, Heidi M. Waldrip, B. L. Castleberry, Rhae A. Drijber, Charles S. Wortmann

Department of Agronomy and Horticulture: Faculty Publications

There is widespread agreement that agricultural antibiotic resistance should be reduced, however, it is unclear from the available literature what an appropriate target for reduction would be. Organic farms provide a unique opportunity to disentangle questions of agricultural antibiotic drug use from questions of antibiotic resistance in the soil. In this study, soil was collected from 12 certified organic farms in Nebraska, evaluated for the presence of tetracycline and sulfonamide resistance genes (n = 15 targets), and correlated to soil physical, chemical, and biological parameters. Tetracycline and sulfonamide antibiotic resistance genes (ARGs) were found in soils from all 12 …

Sifting And Winnowing: Analysis Of Farmer Field Data For Soybean In The Us North-Central Region, Spyridon Mourtzinis, Juan I. Rattalino Edreira, Patricio Grassini, Adam C. Roth, Shaun N. Casteel, Ignacio A. Ciampitti, Hans J. Kandel, Peter M. Kyveryga, Mark A. Licht, Laura E. Lindsey, Daren S. Mueller, Emerson D. Nafziger, Seth L. Naeve, Jordan Stanley, Michael J. Staton, Shawn P. Conley

Department of Agronomy and Horticulture: Faculty Publications

Field trials are commonly used to estimate the effects of different factors on crop yields. In the present study, we followed an alternative approach to identify factors that explain field-to-field yield variation, which consisted of farmer survey data, a spatial framework, and multiple statistical procedures. This approach was used to identify management factors with strongest association with on-farm soybean yield variation in the US North Central (NC) region. Field survey data, including yield and management information, were collected over two crop growing seasons (2014 and 2015) from rainfed and irrigated soybean fields (total of 3568 field-year observations). Fields were grouped …

Morphology, Taxonomy And Mating‑Type Loci In Natural Populations Of Volvox Carteri In Taiwan, Hisayoshi Nozaki, Noriko Ueki, Mari Takusagawa, Shota Yamashita, Osami Misumi, Ryo Matsuzaki, Masanobu Kawachi, Yin-Ru Chiang, Jiunn-Tzong Wu

Publications and Research

Background: Volvox carteri f. nagariensis is a model taxon that has been studied extensively at the cellular and molecular level. The most distinctive morphological attribute of V. carteri f. nagariensis within V. carteri is the production of sexual male spheroids with only a 1:1 ratio of somatic cells to sperm packets or androgonidia (sperm packet initials). However, the morphology of male spheroids of V. carteri f. nagariensis has been examined only in Japanese strains. In addition, V. carteri f. nagariensis has heterothallic sexuality; male and female sexes are determined by the sex-determining chromosomal region or mating-type locus composed of a …

New Additions To The Flora Of San Nicolas Island, Ventura County, California, Benjamin E. Carter, William F. Hoyer Iii, Jonathan Dunn, C. Matt Guilliams

Aliso: A Journal of Systematic and Floristic Botany

Ongoing collecting efforts on San Nicolas Island have substantially increased the number of plant species documented from the island. Here we report thirty-one plants previously unrecorded from the island. The list includes six eudicots, one monocot, four liverworts and twenty mosses. Five of these species are understood to be introduced on San Nicolas and the remainder are believed to be native. The native vascular plants are Logfia filaginoides, Cistanthe maritima and Muhlenbergia microsperma. Of the twenty-four new bryophytes, one—Asterella bolanderi—is the first record from the Channel Islands. Specific ecological and locality information are provided for the …

Contents 36(2)

Aliso: A Journal of Systematic and Floristic Botany

No abstract provided.

Winter Surveys Of Cotinus Obovatus (American Smoketree) In The Ozark Mountains, Gary R. Graves

Journal of the Arkansas Academy of Science

Cotinus obovatus (American smoketree) is a rare deciduous tree with a relictual distribution in southeastern North America. Efforts to map its fine-scale geographic distribution in the Ozark Mountains have been limited to the growing season when the distinctive blooming panicles and foliage facilitate detection in hardwood-cedar woodlands. I describe the physiognomic traits of leafless C. obovatus that permit effective population mapping in winter landscapes. Clumped growth and diagonally leaning stems facilitate detection at a distance. Bark texture, twig morphology, and sap odor confirm the identity of the tree at close range.

Assessing Spatio-Temporal Patterns Of Forest Decline Across A Diverse Landscape In The Klamath Mountains Using A 28-Year Landsat Time-Series Analysis, Drew S. Bost

Cal Poly Humboldt theses and projects

Rates of tree mortality in California and the Pacific Northwest have greatly increased in recent years, driven largely by pest and pathogen outbreaks as well as the effects of hotter, warmer droughts. While there have been a multitude of regional-scale assessments of mortality and forest decline, landscape-level studies are necessary to better identify forests that are most vulnerable to decline and to anticipate future changes. This need is particularly notable in the remote and little-studied mountains of northwest California, which are renowned for their diverse, heterogeneous vegetation types. A recent observation of elevated levels of Shasta red fir (Abies …

Jeweled Spider Flies (Eulonchus Tristis) Are Important Pollinators Of Iris Bracteata, A Rare Siskiyou Mountain Endemic, Jean-Paul E. Ponte

Cal Poly Humboldt theses and projects

Little is known about the pollination biology of the Pacific Coast Irises (Iris: series Californicae, hereafter PCI), especially who visits and pollinates their flowers. In general, Iris flowers are considered bee-pollinated, however, flies in the genus Eulonchus (Acroceridae) are known to visit some PCI members. Therefore, I assessed the relative importance of Eulonchus and other insect visitors to the pollination of a rare PCI species native to the Siskiyou Mountains, I. bracteata.

Methods. I quantified pollinator importance for all flower visitors at sites in northern California and southern Oregon as the product of average visit rate and …

Floral Resource Dynamics For Pollinators In A Central Iowa Tallgrass Prairie Restoration, Lily Conrad, Ben Hoksch, Mark C. Myers

Undergraduate Student Work

Recently, native and managed colonies of pollinators, including bees, butterflies, and other insects, have experienced a largescale declines. In an effort to restore habitat for pollinators, the United States Department of Agriculture’s Farm Service Agency (FSA) created the CP-42 Pollinator Habitat conservation practice under the Conservation Reserve Program. This program pays private landowners to restore habitat for pollinator species with ecological and economic importance. To qualify for the program, CP-42 seed mixes must include:

• A minimum of 9 pollinator-friendly flowering plants,

• A minimum of three species in bloom during each of three seasonal periods (April-June 15, June 15-July, …

New Species, New Combinations And New Synonymies Towards A Treatment Of Acanthaceae For The Manual De Plantas De Costa Rica, Lucinda A. Mcdade, Barry E. Hammel, Carrie A. Kiel

Aliso: A Journal of Systematic and Floristic Botany

In preparation for the publication of the Manual de Plantas de Costa Rica, new species, names, combinations, and synonymies are provided in six genera of Acanthaceae: Anisacanthus, Chamaeranthemum, Dicliptera, Justicia, Ruellia and Stenostephanus. The new species are A. grace-woodiae, J. altior, J. lithophila and S. chavesii. A new name at the species level, R. leonardiana, is provided for R. tubiflora var. hirsuta. With Habracanthus, Hansteinia, Kalbreyeriella and Razisea being subsumed within Stenostephanus, the new combinations S. blepharorhachis, S. citrinus, S. leiorhachis (= Razisea spicata …

Index To Volume 36

Aliso: A Journal of Systematic and Floristic Botany

No abstract provided.

Terrestrial Coarse Woody Debris, Erin C. Rowekamp, Julia I. Chapman, Ryan W. Mcewan

Data Files

No abstract provided.

Lonicera Maackii Berry Leachate Toxicity: Physicochemical Data, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

In-stream (in situ) and in-lab microcosm trials using Hyalella azteca, Anthopotamus verticis, and Allocapnia spp.

Application Of Machine Learning Methodologies For Predicting Corn Economic Optimal Nitrogen Rate, Zhisheng Qin, D. Brenton Myers, Curtis J. Ransom, Newell R. Kitchen, Sang-Zi Liang, James J. Camberato, Paul R. Carter, Richard B. Ferguson, Fabian G. Fernandez, David W. Franzen, Carrie A. M. Laboski, Brad D. Malone, Emerson D. Nafziger, John E. Sawyer, John F. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

Determination of in-season N requirement for corn (Zea mays L.) is challenging due to interactions of genotype, environment, and management. Machine learning (ML), with its predictive power to tackle complex systems, may solve this barrier in the development of locally based N recommendations. The objective of this study was to explore application of ML methodologies to predict economic optimum nitrogen rate (EONR) for corn using data from 47 experiments across the US Corn Belt. Two features, a water table adjusted available water capacity (AWC_wt) and a ratio of in-season rainfall to AWC_wt (RAWC_wt), were …

Floral Resource Availability And Butterfly Community Characteristics In Cp-42 Pollinator Habitat Plantings, Ethan Marburger, Corinne Myers, Mark Myers

Undergraduate Student Work

Prairies once covered approximately 85% of Iowa, but due to extensive habitat loss less than 0.1% of native prairies remain (Smith 1998). Habitat loss in Iowa has been driven by agricultural expansion and intensification, and has resulted in the decline of many native insect pollinators. To curb habitat loss and restore habitat for pollinators, USDA’s Farm Service Agency (FSA) provides private landowners incentives to enroll agricultural land into the Conservation Reserve Program (CRP) Pollinator Habitat (CP-42) practice. The CP-42 conservation practice requires landowners to seed at least 9 species of pollinator friendly wildflowers, legumes, or shrubs on enrolled lands. CP-42 …