Open Access. Powered by Scholars. Published by Universities.®

Botany Commons

Open Access. Powered by Scholars. Published by Universities.®

Discipline
Institution
Keyword
Publication Year
Publication
Publication Type
File Type

Articles 1831 - 1860 of 10753

Full-Text Articles in Botany

Vegetation Characteristics And Bird Communities Associated With Singing Painted Buntings In Northwest Arkansas, Lauren Kristina Thead Dec 2018

Vegetation Characteristics And Bird Communities Associated With Singing Painted Buntings In Northwest Arkansas, Lauren Kristina Thead

Graduate Theses and Dissertations

It has been shown that bird communities are affected by the species composition and physical structure of plant communities. Within avian communities, the bird species that are the most localized in distribution tend to be the most affected by habitat changes. My research analyzed plant and bird communities found with the Painted Bunting (Passerina ciris Linnaeus), a locally common but declining species throughout much of its range. First, I describe vegetation characteristics associated with singing male Painted Buntings in northwest Arkansas. I categorized field sites with singing male Painted Buntings as either managed for wildlife or unmanaged, based on land-use …


Arkansas Soybean Research Studies 2017, Jeremy Ross Dec 2018

Arkansas Soybean Research Studies 2017, Jeremy Ross

Arkansas Agricultural Experiment Station Research Series

No abstract provided.


Understanding Spatial Dynamics Of Tallgrass Prairie Dominated By Tall Fescue, Callie Griffith Dec 2018

Understanding Spatial Dynamics Of Tallgrass Prairie Dominated By Tall Fescue, Callie Griffith

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

This study was conducted on restored tallgrass prairie and invaded tallgrass prairie located in the Grand River Grasslands of southern Iowa to determine differences in heterogeneity of plant structure and functional group composition at different scales. Restored tallgrass prairies were seeded with a species-rich seeding mixture and managed by burning the entire prairie, every three years. Data were collected in August 2014 and 2015 to compare heterogeneity of restoration of native plant structure and functional group composition to the heterogeneity of invaded tallgrass prairies that were managed with patch burning and conventionally grazed. Invaded tallgrass prairies were managed with patch-burning …


Grazing Strategy Effects On Utilization, Animal Performance, Aboveground Production, Species Composition, And Soil Properties On Nebraska Sandhills Meadow, Aaron Shropshire Dec 2018

Grazing Strategy Effects On Utilization, Animal Performance, Aboveground Production, Species Composition, And Soil Properties On Nebraska Sandhills Meadow, Aaron Shropshire

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Ultrahigh stocking density (a.k.a., mob grazing) is proposed as a management tool that results in greater harvest efficiency, animal performance, aboveground plant production, species richness, and soil carbon content. The study objective was to determine grazing treatment, haying, or non-defoliated control effects on forage utilization, aboveground production, animal performance, and soil properties. In 2010, 25 ha of Sandhills meadow were divided into 2 replications of 3 grazing, a hay, and control treatment. Grazing treatments were a 120-pasture rotation with one grazing cycle (mob), a 4-pasture rotation with one cycle (4PR1), and a 4-pasture rotation with two cycles (4PR2) at stocking …


Arkansas Corn And Grain Sorghum Performance Tests 2018, R. D. Bond, J. A. Still, J. F. Carlin Dec 2018

Arkansas Corn And Grain Sorghum Performance Tests 2018, R. D. Bond, J. A. Still, J. F. Carlin

Arkansas Agricultural Experiment Station Research Series

Corn and grain sorghum performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture. The tests provide information to companies marketing seed within the state, and aid the Arkansas Cooperative Extension Service in formulating recommendations for producers.


Influence Of Loss Of Function Of The Fatty Acid Desaturase 7 Gene On Photosynthetic Activity And Foliar Redox Status, Janithri Savindya Wickramanayake Dec 2018

Influence Of Loss Of Function Of The Fatty Acid Desaturase 7 Gene On Photosynthetic Activity And Foliar Redox Status, Janithri Savindya Wickramanayake

Graduate Theses and Dissertations

Fatty Acid Desaturase7 (FAD7) is a chloroplast-localized enzyme that converts 16 and 18 carbon dienoic fatty acids to trienoic fatty acids. The suppressor of prosystemin-mediated response2 (spr2) mutant in tomato (Solanum lycopersicum) and the fad7-1 mutant in Arabidopsis (Arabidopsis thaliana) result in the loss of function of FAD7, which alter the fatty acid profiles of chloroplast membranes and enhance resistance against aphids. This research contributes toward the long-term goal of identifying factors that determine aphid resistance in FAD7 mutants. Previous data suggested constitutive differences between spr2 and WT including increased expression of genes associated with photosynthesis and differences in redox …


Review: North American Ducks, Geese & Swans: Identification Guide. Frank S. Todd., Kevin M. Ringelman Dec 2018

Review: North American Ducks, Geese & Swans: Identification Guide. Frank S. Todd., Kevin M. Ringelman

The Prairie Naturalist

The North American Duck, Geese & Swans: Identification Guide, released in 2018, is the culmination of a lifetime of waterfowl photography by the late Frank Todd. Indeed, this book stands apart from other identification guides as being entirely photo-driven, with minimal introductory material, notations of field marks, or descriptions of the various waterfowl species. It is small enough to be carried in the field (6.5” × 9” × 0.5”), but most readers will find it less useful than a standard bird identification book (Sibley 2014), even for waterfowl. As the title suggests, the Todd guide focuses on North American species, …


Preparing An Effective Poster Presentation, Christopher N. Jacques Dec 2018

Preparing An Effective Poster Presentation, Christopher N. Jacques

The Prairie Naturalist

Greetings GPNSS members! By the time you read this editorial, many of have been experiencing the fury unleashed by ‘Old Man Winter’ and may find yourself counting the days until warmer spring temperatures return once again to the Great Plains. Until then, just a couple more months of bitter cold temperatures, strong winds, and blowing and drifting snow. But not to worry, winter also provides the cold weather enthusiasts among us a chance to enjoy a range of outdoor recreational opportunities, a chance to reflect on the previous year in review, exciting professional and personal opportunities ushered in by the …


Comparison Of Northern Flying And Red Squirrel Phylogenies With Focus On The Insular United States, Alyssa M. Kiesow, Hugh B. Britten Dec 2018

Comparison Of Northern Flying And Red Squirrel Phylogenies With Focus On The Insular United States, Alyssa M. Kiesow, Hugh B. Britten

The Prairie Naturalist

Northern flying squirrel (Glaucomys sabrinus) and red squirrel (Tamiasciurus hudsonicus) populations are endemic to northern North America, including the Black Hills. The Black Hills populations are considered disjunct from other populations within their range. We examined insular populations to determine whether arboreal squirrels in the Black Hills each represent a unique population. We trapped and collected ear samples from northern flying and red squirrels in the Black Hills and in areas of Montana, Wyoming, Idaho, Utah, Minnesota, and Wisconsin to infer population phylogenies with special consideration of the Black Hills population. Microsatellite loci and two mtDNA sequences were used for …


Notes: Two-Headed White-Tailed Deer Fetus, William F. Jensen, Daniel M. Grove, Ryan J. Herigstad, William J. Haase Dec 2018

Notes: Two-Headed White-Tailed Deer Fetus, William F. Jensen, Daniel M. Grove, Ryan J. Herigstad, William J. Haase

The Prairie Naturalist

On 6 April 2018 a female white-tailed deer (Odocoileus virginianus dakotensis) was hit and killed by a vehicle along HWY 1806 in rural Morton County, North Dakota, USA (N46o 38.617; W100o 42.901). Based upon dental eruption and wear (Severinghaus 1949), the female was estimated to be a >4.5 years-of-age. A male fetus with parapagus diprosopus (i.e., shared face) apparently was expelled from the adult female, and a domestic canine (Canis lupus familiaris) carried the fetus to a private residence. The resident contacted the North Dakota Game and Fish Department (NDGFD) to turn in the fetus. On 10 April 2018, NDGFD …


Metabolic Gas Emissions From Prairie Soil Containing Foraging Termites, Charles E. Konemann, B.M. Kard, Tom A. Royer, Mark E. Payton Dec 2018

Metabolic Gas Emissions From Prairie Soil Containing Foraging Termites, Charles E. Konemann, B.M. Kard, Tom A. Royer, Mark E. Payton

The Prairie Naturalist

Differences in subterranean termite metabolic gas emissions are readily observed in laboratory experiments. However, in natural field ecosystems a primary difficulty in measuring subterranean termite gases is non-homogeneous distribution of foraging termites in soil. Our field experiment was designed to aggregate foragers of the 'eastern subterranean termite', Reticulitermes flavipes Kollar (EST), in one of four flux chamber configurations placed on a tallgrass prairie throughout 2014 and 2015. We used differently configured flux chambers to measure metabolic gas emissions from soil with or without foraging termites on The Joseph H. Williams Tallgrass Prairie Preserve (TGPP) in north-central Oklahoma. Foraging termitesaggregated in …


The Prairie Naturalist: The Journal Of The Great Plains Natural Science Society Volume 50 No. 2 Dec 2018

The Prairie Naturalist: The Journal Of The Great Plains Natural Science Society Volume 50 No. 2

The Prairie Naturalist

TABLE OF CONTENTS

43 EDITOR’S NOTE

RESEARCH ARTICLES

46 Metabolic Gas Emissions from Prairie Soil Containing Foraging Termites Charles E. Konemann, B. M. Kard, Tom A. Royer, and Mark. E. Payton

59 Comparison of northern flying and red squirrel phylogenies with focus on the insular United States Alyssa M. Kiesow, and Hugh B. Britten

NOTES

70 Two-Headed White-Tailed Deer Fetus

72 Red-Bellied Snake (Storeria occipitomacilata) Copulation in South Dakota

74 New Breeding Record and Location for Wilson's Phalarope (Phalaropus tricolor) in the Nebraska Great Plains, USA

BOOK REVIEWS

76 Sedges and Rushes of Minnesota: The Complete Guide to Species Identification. …


Investigation Of Alternative Hosts And Agronomic Factors Affecting Xanthomonas Vasicola Pv. Vasculorum, Causal Agent Of Bacterial Leaf Streak Of Corn, Terra Marie Hartman Nov 2018

Investigation Of Alternative Hosts And Agronomic Factors Affecting Xanthomonas Vasicola Pv. Vasculorum, Causal Agent Of Bacterial Leaf Streak Of Corn, Terra Marie Hartman

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Xanthomonas vasicola pv. vasculorum, causal agent of bacterial leaf streak of corn, was first reported in the U.S. in 2016 on Nebraska corn leaf samples. Prior to this report, the pathogen had only been reported on corn in South Africa. After the Nebraska report, the pathogen was reported on corn in Argentina, Brazil, and several U.S. states. This pathogen has an extensive host range, which includes sugarcane (Saccharum officinarum), grain sorghum (Sorghum bicolor), palm species (Dictyosperma album, Roystonea regia, and Areca catechu) and broom bamboo (Thysanolaena maxima). Plants commonly found in …


Identification Of Genes/Genomic Regions Controlling Resistance To Biotic And Abiotic Stresses In Synthetic Hexaploid Wheat, Madhav Bhatta Nov 2018

Identification Of Genes/Genomic Regions Controlling Resistance To Biotic And Abiotic Stresses In Synthetic Hexaploid Wheat, Madhav Bhatta

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Synthetic hexaploid wheat (SHW; 2n=6x=42, AABBDD, Triticum aestivumL.) is produced from an interspecific cross between durum wheat (2n=4x=28, AABB, T. turgidumL.) and goat grass (2n=2x=14, DD, AegilopstauschiiCoss.). It is reported to have a considerable amount of genetic diversity and is a potential source of novel alleles controlling abiotic and biotic stresses resistance and improving wheat quality. Therefore, the first study was to understand the genetic diversity and population structure of SHWs and compare the genetic diversity of SHWs with elite bread wheat (BW) cultivars. The result of this study identified a wide range of genetic diversity within …


Canavalia Gladiata And Dolichos Lablab Extracts For Sustainable Pest Biocontrol And Plant Nutrition Improvement In El Salvador, Carlos Martinez Oct 2018

Canavalia Gladiata And Dolichos Lablab Extracts For Sustainable Pest Biocontrol And Plant Nutrition Improvement In El Salvador, Carlos Martinez

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Botanical repellents and pesticides are now being rediscovered as new tools for integrated pest management in order to reduce the use of toxic chemicals in crop production. Canavalia gladiata and Dolichos lablab are two Fabaceae very well adapted to farmlands of El Salvador, effective as living barriers and mostly as cover crops, however, they are not yet very well disseminated. This document describes the potential for using the liquid extracts and the dry flour of raw seeds of those plants for economic benefit and practical convenience for pest management in Salvadorian agriculture under field conditions. Seed extracts were useful when …


Assessment Of Soil Fertility Under Different Land-Use Systems In Dhading District Of Nepal, Sudarshan Kharal, Babu Ram Khanal, Dinesh Panday Oct 2018

Assessment Of Soil Fertility Under Different Land-Use Systems In Dhading District Of Nepal, Sudarshan Kharal, Babu Ram Khanal, Dinesh Panday

Department of Agronomy and Horticulture: Faculty Publications

Unscientific land use and cropping techniques have led high soil erosion and degradation of soil quality in the mid-hills of Nepal. To understand the effects of land use systems for selected soil chemical properties in mid-hills, composite soil samples at 0 cm to 20 cm depth were collected from five different land-use systems: Grassland, forest land, upland, lowland, and vegetable farms from Dhading district of Nepal in 2017. Soil samples were analyzed for soil fertility parameters: Soil pH, organic matter (OM), total nitrogen (N), available phosphorus (P), available potassium (K) and its effect due to different land use systems were …


Research Report: Prevalence And Mechanism Of Atrazine Resistance In Waterhemp From Nebraska, Rodrigo Werle, Mithila Jugulam, Greg Kruger, Amaranatha Vennapusa, Felipe Faleco, Bruno Viera, Spencer Samuelson Oct 2018

Research Report: Prevalence And Mechanism Of Atrazine Resistance In Waterhemp From Nebraska, Rodrigo Werle, Mithila Jugulam, Greg Kruger, Amaranatha Vennapusa, Felipe Faleco, Bruno Viera, Spencer Samuelson

Department of Agronomy and Horticulture: Faculty Publications

Waterhemp is a troublesome summer annual broadleaf weed species that has evolved resistance to glyphosate and other herbicide sites of action (SOA) in Nebraska, including to groups 2 (i.e., Classic, Pursuit, FirstRate), 4 (i.e., 2, 4-D), 5(i.e., atrazine) and 27 (e.g., Callisto, Laudis). The overall objectives of this study were to

  1. Evaluate the eficay of PRE applied atrazine, metribuzin and sulfentrazone to control Nebraska waterhemp populations;
  2. Evaluate the efficacy of POST applied atrazine to control Nebraska waterhemp populations; and
  3. Determine the mechanism of atrazine resistance in Nebraska waterhemp populations.


Digital Soil Mapping In The Bara District Of Nepal Using Kriging Tool In Arcgis, Dinesh Panday, Bijesh Maharjan, Devraj Chalise, Ram Kumar Shrestha, Bikesh Twanabasu Oct 2018

Digital Soil Mapping In The Bara District Of Nepal Using Kriging Tool In Arcgis, Dinesh Panday, Bijesh Maharjan, Devraj Chalise, Ram Kumar Shrestha, Bikesh Twanabasu

Department of Agronomy and Horticulture: Faculty Publications

Digital soil mapping has been widely used to develop statistical models of the relationships between environmental variables and soil attributes. This study aimed at determining and mapping the spatial distribution of the variability in soil chemical properties of the agricultural floodplain lands of the Bara district in Nepal. The study was carried out in 23 Village Development Committees with 12,516 ha total area, in the southern part of the Bara district. A total of 109 surface soil samples (0 to 15 cm depth) were collected and analyzed for pH, organic matter (OM), nitrogen (N), phosphorus (P, expressed as P2 …


Acidulant Effect On Greening, Reducing Capacity, And Tryptophan Fluorescence Of Sunflower Butter Cookie Dough During Refrigerated Storage, Joele Tsopkeng Atonfack, Zeynep Akyol Ataman, Lilian M. Were Oct 2018

Acidulant Effect On Greening, Reducing Capacity, And Tryptophan Fluorescence Of Sunflower Butter Cookie Dough During Refrigerated Storage, Joele Tsopkeng Atonfack, Zeynep Akyol Ataman, Lilian M. Were

Food Science Faculty Articles and Research

BACKGROUND: Sunflower seed derived butter can be a source of protein and phenolic antioxidants in refrigerated dough. Chlorogenic quinone-amino acid induced greening can however occur at alkaline pH, which could result in less bioavailable conjugated phenol-amino acids. Acidulants were tested as potential anti-greening ingredients in refrigerated chemically leavened cookie dough. Effect of refrigerated storage time, leavening agents and acidulants on tryptophan fluorescence (»ex=280nm, »em=300-500), color (hunter LAB), reducing capacity (DPPH and Folin-Ciocalteu reagent reducing capacity/FCRC), and hydroxycinnamic acids were measured.

RESULTS: The pH range of acidified doughs was 4.83–6.98 compared to 7.65- 9.18 in nonacidified leavened doughs after 24 days. …


Overexpression Of The Sorghum Bicolor Sbccoaomt Alters Cell Wall Associated Hydroxycinnamoyl Groups, Hannah M. Tetreault, Erin D. Scully, Tammy Gries, Nathan A. Palmer, Deanna L. Funnell-Harris, Bruce S. Dien, Gautam Sarath, Thomas E. Clemente, Scott E. Sattler Oct 2018

Overexpression Of The Sorghum Bicolor Sbccoaomt Alters Cell Wall Associated Hydroxycinnamoyl Groups, Hannah M. Tetreault, Erin D. Scully, Tammy Gries, Nathan A. Palmer, Deanna L. Funnell-Harris, Bruce S. Dien, Gautam Sarath, Thomas E. Clemente, Scott E. Sattler

Department of Agronomy and Horticulture: Faculty Publications

Sorghum (Sorghum bicolor) is a drought tolerant crop, which is being developed as a bioenergy feedstock. The monolignol biosynthesis pathway is a major focus for altering the abundance and composition of lignin. Caffeoyl coenzyme-A O-methyltransferase (CCoAOMT) is an S-adenosyl methionine (SAM)-dependent O-methyltransferase that methylates caffeoyl-CoA to generate feruloyl-CoA, an intermediate required for the biosynthesis of both G- and S-lignin. SbCCoAOMT was overexpressed to assess the impact of increasing the amount of this enzyme on biomass composition. SbCCoAOMT overexpression increased both soluble and cell wall-bound (esterified) ferulic and sinapic acids, however lignin concentration and its composition …


Elucidating Sorghum Biomass, Nitrogen And Chlorophyll Contents With Spectral And Morphological Traits Derived From Unmanned Aircraft System, Jiating Li, Yeyin Shi, Arun-Narenthiran Veeranampalayam-Sivakumar, Daniel P. Schachtman Oct 2018

Elucidating Sorghum Biomass, Nitrogen And Chlorophyll Contents With Spectral And Morphological Traits Derived From Unmanned Aircraft System, Jiating Li, Yeyin Shi, Arun-Narenthiran Veeranampalayam-Sivakumar, Daniel P. Schachtman

Department of Agronomy and Horticulture: Faculty Publications

Unmanned aircraft systems (UAS) provide an efficient way to phenotype cropmorphology with spectral traits such as plant height, canopy cover and various vegetation indices (VIs) providing information to elucidate genotypic responses to the environment. In this study, we investigated the potential use of UAS-derived traits to elucidate biomass, nitrogen and chlorophyll content in sorghum under nitrogen stress treatments. A nitrogen stress trial located in Nebraska, USA, contained 24 different sorghum lines, 2 nitrogen treatments and 8 replications, for a total of 384 plots. Morphological and spectral traits including plant height, canopy cover and various VIs were derived from UAS flights …


A Catalog Of Orchid Species And Their Distribution In Mazumbai Forest Reserve, Tanga Region, Tanzania, Sierra Loomis Oct 2018

A Catalog Of Orchid Species And Their Distribution In Mazumbai Forest Reserve, Tanga Region, Tanzania, Sierra Loomis

Independent Study Project (ISP) Collection

Although orchids are common in Mazumbai Forest Reserve (MFR), there are limited resources on where they grow and how to identify them. The primary objective of this study is to create an updated catalog of orchids in MFR, using species abundance, richness and diversity of the orchids as indicators of where orchids prefer to grow in MFR. Orchid species vary greatly as altitude changes, making it important to survey orchids across different altitudes. Therefore, Mazumbai Forest was split into five different altitudinal bands spanning 1400 – 1900m and six 100 x 20m plots in each band were surveyed for both …


He Effects Of Climate Change On Native Icelandic Plants: A Morphometric Analysis, Maia Jones Oct 2018

He Effects Of Climate Change On Native Icelandic Plants: A Morphometric Analysis, Maia Jones

Independent Study Project (ISP) Collection

This study seeks to evaluate the morphology of three native Icelandic plant species, Alchemilla alpina, Arabidopsis petraea, and Silene uniflora, in order to determine if changing climatic conditions have had an effect on Icelandic vegetation during the twentieth century. I measured herbarium specimens collected during a time period before 1950, and during the period from the late 1960s to the present. Using traditional morphometrics methods, I searched for changes in morphological traits such as plant height, leaf length to width ratio, and leaf size, then performed two-tailed t-tests to analyze the results of the analyses. I found significant changes …


Summaries Of Arkansas Cotton Research 2017, Fred Bourland Oct 2018

Summaries Of Arkansas Cotton Research 2017, Fred Bourland

Arkansas Agricultural Experiment Station Research Series

No abstract provided.


The Effect Of Ingredient-Specific Calorie Information On Calories Ordered, Christopher R. Gustafson, Eliana Zeballos Sep 2018

The Effect Of Ingredient-Specific Calorie Information On Calories Ordered, Christopher R. Gustafson, Eliana Zeballos

Department of Agronomy and Horticulture: Faculty Publications

Providing calorie labeling is a widely used strategy to combat obesity. However, there is little evidence that the availability of calorie information at food-away-from-home establishments has an effect on food choices. Listing calorie information for each ingredient, though, may allow customers to avoid high-calorie items that add little to their enjoyment. Data from a natural experiment were used to compare total calories ordered before and after the provision of per-ingredient versus for build-your-own sandwiches, and per-sandwich for pre-defined sandwiches, at a supermarket sandwich counter. Sandwich order slips from a Lincoln, Neb. supermarket were collected from December 15, 2016 to February …


Checklist Of The Vascular Plants Of Redwood National Park, James P. Smith Jr Sep 2018

Checklist Of The Vascular Plants Of Redwood National Park, James P. Smith Jr

Botanical Studies

No abstract provided.


Vascular Plants Of Eagle Creek Campground, Trinity County, James P. Smith Jr Sep 2018

Vascular Plants Of Eagle Creek Campground, Trinity County, James P. Smith Jr

Botanical Studies

No abstract provided.


Stevens, Donald (Fa 1205), Manuscripts & Folklife Archives Sep 2018

Stevens, Donald (Fa 1205), Manuscripts & Folklife Archives

Folklife Archives Finding Aids

Finding aid and full-text scan of paper (Click on “Additional Files” below) for Folklife Archives Project 1205. Student paper titled “Digging Ginseng” in which Donald Stevens describes the process of locating, cleaning, drying, and selling ginseng root. Stevens collected information from Charlie Dean Ashley, a Breckenridge County native, and Stevens’ neighbor in Dillsboro, Indiana. The paper also includes a photograph of Ashley along with his favorite hunting grounds.


Typification Of The Genus Dicaryum (Verbenaceae), John J. Pipoly Iii, Jon M. Ricketson Sep 2018

Typification Of The Genus Dicaryum (Verbenaceae), John J. Pipoly Iii, Jon M. Ricketson

Marine & Environmental Sciences Faculty Articles

The genus Dicaryum Willd. ex Roem. & Schult. was described in 1819 and does not have a type species. Two species were described, and one, D. subdentatum Willd. ex Roem. & Schult., is better selected as the type because the other species, D. serrulatum Willd. ex Roem. & Schult., is not a Verbenaceae but rather a Primulaceae-Myrsinoideae and belongs to Geissanthus Hook. f. Given the circumstances, we choose D. subdentatum as the type species of Dicaryum, which is a synonym of Citharexylum ilicifolium Kunth.


Phylogenomic Evidence For Ancient Recombination Between Plastid Genomes Of The Cupressus-Juniperus-Xanthocyparis Complex (Cupressaceae), Andan Zhu, Weishu Fan, Robert P. Adams, Jeffrey P. Mower Sep 2018

Phylogenomic Evidence For Ancient Recombination Between Plastid Genomes Of The Cupressus-Juniperus-Xanthocyparis Complex (Cupressaceae), Andan Zhu, Weishu Fan, Robert P. Adams, Jeffrey P. Mower

Department of Agronomy and Horticulture: Faculty Publications

Background: Phylogenetic relationships among Eastern Hemisphere cypresses, Western Hemisphere cypresses, junipers, and their closest relatives are controversial, and generic delimitations have been in flux for the past decade. To address relationships and attempt to produce a more robust classification, we sequenced 11 new plastid genomes (plastomes) from the five variously described genera in this complex (Callitropsis, Cupressus, Hesperocyparis, Juniperus, and Xanthocyparis) and compared them with additional plastomes from diverse members of Cupressaceae.

Results: Phylogenetic analysis of protein-coding genes recovered a topology in which Juniperus is sister to Cupressus, whereas a tree based on …