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Articles 11701 - 11730 of 16391
Full-Text Articles in Agronomy and Crop Sciences
Ripeness Attributes Of Arkansas-Grown Peaches And Nectarines At Harvest And During Postharvest Storage, Mary C. Siebenmorgen, Renee T. Threlfall, Margaret Worthington
Ripeness Attributes Of Arkansas-Grown Peaches And Nectarines At Harvest And During Postharvest Storage, Mary C. Siebenmorgen, Renee T. Threlfall, Margaret Worthington
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
Since peaches and nectarines are a valued fresh-market crop worldwide, evaluating postharvest potential helps determine feasibility for commercial markets. The ripeness attributes of 10 peach and nectarine genotypes were evaluated at harvest (day 0) and after 7 and 14 d storage at 4° C. The fruit was hand harvested at tree ripeness (ripened on the tree) and commercial ripeness (ripened during storage). The attributes of the tree-ripened fruit and commercially-ripened fruit varied at harvest and included chlorophyll (0.04-0.86 abs), peach weight (132-264 g), soluble solids (7.23-12.57%), pH (3.18-4.66), titratable acidity (0.16-1.21%), and flesh firmness (6.92-35.72 N). In general, tree-ripened fruit …
Characterization Of Short-Grain Rice Cultivars Grown In Japan, California And Arkansas, Michiyo Nishiwaki, Eric Lii, Andy Mauromoustakos, Ya-Jane Wang
Characterization Of Short-Grain Rice Cultivars Grown In Japan, California And Arkansas, Michiyo Nishiwaki, Eric Lii, Andy Mauromoustakos, Ya-Jane Wang
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
Arkansas and California are the two leading rice-producing states in the U.S. Arkansas predominantly long- and medium-grain rice and California primarily medium- and short-grain rice. Although short-grain rice accounts for less than 2 % of U.S. rice production, the demand for short-grain rice is rising because of increasing popularity of sushi and sake. Because of its premium price and different applications, short-grain rice may open up new opportunities for rice farmers in Arkansas. The objective of this study was to characterize the physical, physicochemical and texture properties of rice cultivars grown in Arkansas versus in Japan and California. Three short-grain …
Growth, Fitness, And Overwinter Survival Of A Shattercane (Sorghum Bicolor Ssp. Drummondii) × Grain Sorghum (Sorghum Bicolor Ssp. Bicolor) F2 Population, Jared J. Schmidt, Melinda K. Yerka, Jeffrey F. Pedersen, John L. Lindquist
Growth, Fitness, And Overwinter Survival Of A Shattercane (Sorghum Bicolor Ssp. Drummondii) × Grain Sorghum (Sorghum Bicolor Ssp. Bicolor) F2 Population, Jared J. Schmidt, Melinda K. Yerka, Jeffrey F. Pedersen, John L. Lindquist
Department of Agronomy and Horticulture: Faculty Publications
Although sorghum [Sorghum bicolor (L.) Moench ssp. bicolor] is the fifth most important grain crop in terms of global production, no commercial hybrids carry genetically engineered (GE) traits for resistance to insect pests or herbicides due to regulatory concerns about gene flow to weedy relatives. However, non-GE herbicide resistance currently is being developed in grain sorghum and will likely transfer to related weeds. Monitoring the impact of this new nuclear technology on the evolution and invasiveness of related weeds requires a baseline understanding of the population biology of grain sorghum genes once they transfer to in situ weed …
Phenotypic Data From Inbred Parents Can Improve Genomic Prediction In Pearl Millet Hybrids, Zhikai Liang, Shashi K. Gupta, Cheng-Ting Yeh, Yang Zhang, Daniel W. Ngu, Ramesh Kumar, Hemant T. Patil, Kanulal D. Mungra, Dev Vart Yadav, Abhishek Rathore, Rakesh K. Srivastava, Rajeev Gupta, Jinliang Yang, Rajeev K. Varshney, Patrick S. Schnable, James C. Schnable
Phenotypic Data From Inbred Parents Can Improve Genomic Prediction In Pearl Millet Hybrids, Zhikai Liang, Shashi K. Gupta, Cheng-Ting Yeh, Yang Zhang, Daniel W. Ngu, Ramesh Kumar, Hemant T. Patil, Kanulal D. Mungra, Dev Vart Yadav, Abhishek Rathore, Rakesh K. Srivastava, Rajeev Gupta, Jinliang Yang, Rajeev K. Varshney, Patrick S. Schnable, James C. Schnable
Department of Agronomy and Horticulture: Faculty Publications
Pearl millet is a non-model grain and fodder crop adapted to extremely hot and dry environments globally. In India, a great deal of public and private sectors’ investment has focused on developing pearl millet single cross hybrids based on the cytoplasmic-genetic male sterility (CMS) system, while in Africa most pearl millet production relies on open pollinated varieties. Pearl millet lines were phenotyped for both the inbred parents and hybrids stage. Many breeding efforts focus on phenotypic selection of inbred parents to generate improved parental lines and hybrids. This study evaluated two genotyping techniques and four genomic selection schemes in pearl …
Isolation And Analysis Of Microbial Communities In Soil, Rhizosphere, And Roots In Perennial Grass Experiments, Morgan R. Mcpherson, Peng Wang, Robert B. Mitchell, Daniel P. Schachtman
Isolation And Analysis Of Microbial Communities In Soil, Rhizosphere, And Roots In Perennial Grass Experiments, Morgan R. Mcpherson, Peng Wang, Robert B. Mitchell, Daniel P. Schachtman
Department of Agronomy and Horticulture: Faculty Publications
Plant and soil microbiome studies are becoming increasingly important for understanding the roles microorganisms play in agricultural productivity. The purpose of this manuscript is to provide detail on how to rapidly sample soil, rhizosphere, and endosphere of replicated field trials and analyze changes that may occur in the microbial communities due to sample type, treatment, and plant genotype. The experiment used to demonstrate these methods consists of replicated field plots containing two, pure, warm-season grasses (Panicum virgatum and Andropogon gerardii) and a low-diversity grass mixture (A. gerardii, Sorghastrum nutans, and Bouteloua curtipendula). Briefly, plants …
Hunger In The Land Of Plenty: Local Responses To Food Insecurity In Iowa, Gabrielle E. Roesch-Mcnally, Jacqueline Ann Nester, Andrea D. Basche, Eric Christianson, Emily Zimmerman
Hunger In The Land Of Plenty: Local Responses To Food Insecurity In Iowa, Gabrielle E. Roesch-Mcnally, Jacqueline Ann Nester, Andrea D. Basche, Eric Christianson, Emily Zimmerman
Department of Agronomy and Horticulture: Faculty Publications
Story County (estimated population 92,406 in 2013) lies in the heart of central Iowa, a state renowned for its remarkable agricultural productivity. Iowa leads all states for production of corn, soybean, and hogs. Revenues from agricultural products in Iowa total more than $30 billion annually according the 2012 Agricultural Census (USDA-NASS 2014). This productivity stems from a favorable natural and political environment. The temperate climate, productive soils, and gentle topography are ideal for our production system of commodity agriculture facilitated by federal policies, which include subsidized crop insurance and commodity payments (Horrigan, Lawrence, and Walker 2002). Despite this productivity and …
Social–Ecological Landscape Patterns Predict Woody Encroachment From Native Tree Plantings In A Temperate Grassland, Victoria M. Donovan, Jessica L. Burnett, Christine H. Bielski, Hannah E. Birge, Rebecca Bevans, Dirac L. Twidwell Jr, Craig R. Allen
Social–Ecological Landscape Patterns Predict Woody Encroachment From Native Tree Plantings In A Temperate Grassland, Victoria M. Donovan, Jessica L. Burnett, Christine H. Bielski, Hannah E. Birge, Rebecca Bevans, Dirac L. Twidwell Jr, Craig R. Allen
Department of Agronomy and Horticulture: Faculty Publications
Afforestation is often viewed as the purposeful planting of trees in historically non-forested grasslands, but an unintended consequence is woody encroachment, which should be considered part of the afforestation process. In North America’s temperate grassland biome, Eastern redcedar (Juniperus virginiana L.) is a native species used in tree plantings that aggressively invades in the absence of controlling processes. Cedar is a well-studied woody encroacher, but little is known about the degree to which cedar windbreaks, which are advocated for in agroforestry programs, are contributing to woody encroachment, what factors are associated with cedar spread from windbreaks, nor where encroachment …
Engineering Linear, Branched-Chain Triterpene Metabolism In Monocots, Chase Kempinski, Zuodong Jiang, Garrett Zinck, Shirley J. Sato, Zhengxiang Ge, Thomas E. Clemente, Joe Chappell
Engineering Linear, Branched-Chain Triterpene Metabolism In Monocots, Chase Kempinski, Zuodong Jiang, Garrett Zinck, Shirley J. Sato, Zhengxiang Ge, Thomas E. Clemente, Joe Chappell
Department of Agronomy and Horticulture: Faculty Publications
Triterpenes are thirty-carbon compounds derived from the universal five-carbon prenyl precursors isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Normally, triterpenes are synthesized via the mevalonate (MVA) pathway operating in the cytoplasm of eukaryotes where DMAPP is condensed with two IPPs to yield farnesyl diphosphate (FPP), catalyzed by FPP synthase (FPS). Squalene synthase (SQS) condenses two molecules of FPP to generate the symmetrical product squalene, the first committed precursor to sterols and most other triterpenes. In the green algae Botryococcus braunii, two FPP molecules can also be condensed in an asymmetric manner yielding the more highly branched triterpene, botryococcene. Botryococcene …
Genomic Selection In Preliminary Yield Trials In A Winter Wheat Breeding Program, Vikas Belamkar, Mary J. Guttieri, Waseem Hussain, Diego Jarquin, Ibrahim El-Basyoni, Jesse Poland, Aaron J. Lorenz, P. Stephen Baenziger
Genomic Selection In Preliminary Yield Trials In A Winter Wheat Breeding Program, Vikas Belamkar, Mary J. Guttieri, Waseem Hussain, Diego Jarquin, Ibrahim El-Basyoni, Jesse Poland, Aaron J. Lorenz, P. Stephen Baenziger
Department of Agronomy and Horticulture: Faculty Publications
Genomic prediction (GP) is now routinely performed in crop plants to predict unobserved phenotypes. The use of predicted phenotypes to make selections is an active area of research. Here, we evaluate GP for predicting grain yield and compare genomic and phenotypic selection by tracking lines advanced. We examined four independent nurseries of F3:6 and F3:7 lines trialed at 6 to 10 locations each year. Yield was analyzed using mixed models that accounted for experimental design and spatial variations. Genotype-by-sequencing provided nearly 27,000 high-quality SNPs. Average genomic predictive ability, estimated for each year by randomly masking lines as missing …
Transient Heat Stress During Early Seed Development Primes Germination And Seedling Establishment In Rice, Kevin Begcy, Jaspreet Sandhu, Harkamal Walia
Transient Heat Stress During Early Seed Development Primes Germination And Seedling Establishment In Rice, Kevin Begcy, Jaspreet Sandhu, Harkamal Walia
Department of Agronomy and Horticulture: Faculty Publications
Rice yield is highly sensitive to increased temperature. Given the trend of increasing global temperatures, this sensitivity to higher temperatures poses a challenge for achieving global food security. Early seed development in rice is highly sensitive to unfavorable environmental conditions. Heat stress (HS) during this stage decreases seed size and fertility, thus reducing yield. Here, we explore the transgenerational phenotypic consequences of HS during early seed development on seed viability, germination, and establishment. To elucidate the impact of HS on the developmental events in postzygotic rice seeds, we imposed moderate (35°C) and severe (39°C) HS treatments initiated 1 day after …
Genomic-Enabled Prediction Models Using Multi-Environment Trials To Estimate The Effect Of Genotype × Environment Interaction On Prediction Accuracy In Chickpea, Manish Roorkiwal, Diego Jarquin, Muneendra K. Singh, Pooran M. Gaur, Chellapilla Bharadwaj, Abhishek Rathore, Reka Howard, Samineni Srinivasan, Ankit Jain, Vanika Garg, Sandip Kale, Annapurna Chitikineni, Shailesh Tripathi, Elizabeth Jones, Kelly R. Robbins, José Crossa, Rajeev K. Varshney
Genomic-Enabled Prediction Models Using Multi-Environment Trials To Estimate The Effect Of Genotype × Environment Interaction On Prediction Accuracy In Chickpea, Manish Roorkiwal, Diego Jarquin, Muneendra K. Singh, Pooran M. Gaur, Chellapilla Bharadwaj, Abhishek Rathore, Reka Howard, Samineni Srinivasan, Ankit Jain, Vanika Garg, Sandip Kale, Annapurna Chitikineni, Shailesh Tripathi, Elizabeth Jones, Kelly R. Robbins, José Crossa, Rajeev K. Varshney
Department of Agronomy and Horticulture: Faculty Publications
Genomic selection (GS) by selecting lines prior to field phenotyping using genotyping data has the potential to enhance the rate of genetic gains. Genotype × environment (G × E) interaction inclusion in GS models can improve prediction accuracy hence aid in selection of lines across target environments. Phenotypic data on 320 chickpea breeding lines for eight traits for three seasons at two locations were recorded. These lines were genotyped using DArTseq (1.6 K SNPs) and Genotyping-by-Sequencing (GBS; 89 K SNPs). Thirteen models were fitted including main effects of environment and lines, markers, and/or naïve and informed interactions to estimate prediction …
Gene Expression Profiling Of Iron Deficiency Chlorosis Sensitive And Tolerant Soybean Indicates Key Roles For Phenylpropanoids Under Alkalinity Stress, Brian M. Waters, Keenan Amundsen, George L. Graef
Gene Expression Profiling Of Iron Deficiency Chlorosis Sensitive And Tolerant Soybean Indicates Key Roles For Phenylpropanoids Under Alkalinity Stress, Brian M. Waters, Keenan Amundsen, George L. Graef
Department of Agronomy and Horticulture: Faculty Publications
Alkaline soils comprise 30% of the earth and have low plant-available iron (Fe) concentration, and can cause iron deficiency chlorosis (IDC). IDC causes soybean yield losses of $260 million annually. However, it is not known whether molecular responses to IDC are equivalent to responses to low iron supply. IDC tolerant and sensitive soybean lines provide a contrast to identify specific factors associated with IDC.We used RNA-seq to compare gene expression under combinations of normal pH (5.7) or alkaline pH (7.7, imposed by 2.5mM bicarbonate, or pH 8.2 imposed by 5mM bicarbonate) and normal (25μM) or low (1μM) iron conditions from …
Managing Grazing Lands To Improve Soils And Promote Climate Change Adaptation And Mitigation: A Global Synthesis, Marcia Delonge, Andrea D. Basche
Managing Grazing Lands To Improve Soils And Promote Climate Change Adaptation And Mitigation: A Global Synthesis, Marcia Delonge, Andrea D. Basche
Department of Agronomy and Horticulture: Faculty Publications
The potential to improve soils to help farmers and ranchers adapt to and mitigate climate change has generated significant enthusiasm. Within this discussion, grasslands have surfaced as being particularly important, due to their geographic range, their capacity to store substantial quantities of carbon relative to cultivated croplands and their potential role in mitigating droughts and floods. However, leveraging grasslands for climate change mitigation and adaptation will require a better understanding of how farmers and ranchers who rely on them for their livelihoods can improve management and related outcomes. To investigate opportunities for such improvements, we conducted a meta-analysis of field …
Plant Discrimination By Support Vector Machine Classifier Based On Spectral Reflectance, Saman Akbarzadeh, Arie J. Paap, Selam T. Ahderom, Beniamin Apopei, Kamal Alameh
Plant Discrimination By Support Vector Machine Classifier Based On Spectral Reflectance, Saman Akbarzadeh, Arie J. Paap, Selam T. Ahderom, Beniamin Apopei, Kamal Alameh
Research outputs 2014 to 2021
Support Vector Machine (SVM) algorithms are developed for weed-crop discrimination and their accuracies are compared with a conventional data-aggregation method based on the evaluation of discrete Normalised Difference Vegetation Indices (NDVIs) at two different wavelengths. A testbed is especially built to collect the spectral reflectance properties of corn (as a crop) and silver beet (as a weed) at 635 nm, 685 nm, and 785 nm, at a speed of 7.2 km/h. Results show that the use of the Gaussian-kernel SVM method, in conjunction with either raw reflected intensities or NDVI values as inputs, provides better discrimination accuracy than that attained …
Plant Community Response To Disturbances In Nebraska Sandhills Upland Prairie, Josiah D. Dallmann
Plant Community Response To Disturbances In Nebraska Sandhills Upland Prairie, Josiah D. Dallmann
Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research
Historically, disturbances shaped prairie ecosystems both directly through events like fire and soil moving by animals, as well as indirectly through dynamic rainfall patterns and periodic flux in seed availabilities. We hypothesized that the implementation of several distinct disturbance events in Nebraska Sandhills upland prairie would have measurable effects on plant community composition. We implemented mid-spring fire, soil disturbance in the form of disking, seed addition of native forbs on disked plots, as well as early summer supplemental watering (to mimic minor rainfall events during abnormally dry periods) during 2016 and 2017. Plant community response during the first and second …
Corn Grain Yield Components And Nutrient Accumulation In Response To Nitrogen, Plant Density And Hybrid, Maria Julia Santoro
Corn Grain Yield Components And Nutrient Accumulation In Response To Nitrogen, Plant Density And Hybrid, Maria Julia Santoro
Theses and Dissertations--Plant and Soil Sciences
Modern maize hybrids exhibit higher yields, increased biomass production, stress tolerance and greater nitrogen (N) use efficiency. Increased biomass accumulation can influence nutrient uptake and lead to increased nutrient removal. Hybrids were tested at seeding rates (SR) of 74000 (low) and 148000 (supraoptimal) plants ha-1 and at N rates of 0 (deficient) and 390 (non-limiting) kg N ha-1. Plants were sampled at V7, V14, R3, R5 and R6 and separated into vegetative and reproductive fractions for determination of dry matter and N accumulation. Grain yield was harvested at R6.
The high SR and high N treatment combination …
Measured Soil Hydraulic Properties As Rzwqm2 Input To Simulate Soil Water Dynamics And Crop Evapotranspiration, Saadi Sattar Shahadha
Measured Soil Hydraulic Properties As Rzwqm2 Input To Simulate Soil Water Dynamics And Crop Evapotranspiration, Saadi Sattar Shahadha
Theses and Dissertations--Plant and Soil Sciences
Agricultural system models integrate many different processes that cannot all be measured in field experiments and help quantify soil water dynamics, crop evapotranspiration, and crop growth with high temporal resolution. Understanding soil water dynamics and crop evapotranspiration is essential to improve agricultural management of field crops. For example, the interaction between nitrogen application rate and water dynamics is not sufficiently understood. In most cases, model simulations deviate from field measurements, especially when model input parameters are indirectly and unspecifically derived. The extent to which measured soil hydraulic property inputs decrease the discrepancy between measured and simulated soil water status is …
Improving Subtropical Grass Pastures On The South Coast Of Western Australia, Paul Sanford, Ron Master, Eric Dobbe
Improving Subtropical Grass Pastures On The South Coast Of Western Australia, Paul Sanford, Ron Master, Eric Dobbe
Bulletins 4000 -
This bulletin reports on the findings of a research project funded by DPIRD and MLA that investigated methods to improve legume content and increase production of both kikuyuand panic-based pastures on the south coast of WA.
Environmental Risk, Resource And Production, Nancye Gannaway
Environmental Risk, Resource And Production, Nancye Gannaway
Farm Systems and Economics published reports
Plan Prepare Prosper - workshop
Aims
- To identify and plan for projected changes in weather patterns and in the physical resources that underpin the productivity of the farm enterprise.
- To develop initiatives to manage observed and likely threats from the environment to farm enterprises.
- To support the achievement of long-term economic viability of land under production
Today's content will help develop risk management strategies for agricultural production systems.
Crop Height Estimation With Unmanned Aerial Vehicles, Carrick Detweiler, David Anthony, Sebastian Elbaum
Crop Height Estimation With Unmanned Aerial Vehicles, Carrick Detweiler, David Anthony, Sebastian Elbaum
School of Computing: Faculty Publications
An unmanned aerial vehicle (UAV) can be configured for crop height estimation. In some examples, the UAV includes an aerial propulsion system, a laser scanner configured to face downwards while the UAV is in flight, and a control system. The laser scanner is configured to scan through a two-dimensional scan angle and is characterized by a maxi mum range. The control system causes the UAV to fly over an agricultural field and maintain, using the aerial propulsion system and the laser scanner, a distance between the UAV and a top of crops in the agricultural field to within a programmed …
Biomass Production Of Herbaceous Energy Crops In The United States: Field Trial Results And Yield Potential Maps From The Multiyear Regional Feedstock Partnership, Dokyoung Lee, Ezra Aberle, Eric K. Anderson, William Anderson, Brian S. Baldwin, David D. Baltensperger, Michael Barrett, Jurg Blumenthal, Stacy Bonos, Joe Bouton, David I. Bransby, Charlie Brummer, Pane S. Burks, Chengci Chen, Christopher Daly, Jose Egenolf, Rodney L. Farris, John H. Fike, Roch E. Gaussoin, John R. Gill, Kenneth Gravois, Michael D. Halbleib, Anna Hale, Wayne Hanna, Keith Harmoney, Emily A. Heaton, Ron W. Heiniger, Lindsey Hoffman, Chang O. Hong, Gopal Kakani, Robert Kallenbach, Bisoondat Macoon, James C. Medley, Ali Missaoui, Robert B. Mitchell, Ken J. Moore, Jesse I. Morrison, Gary N. Odvody, Jonathan D. Richwine, Richard Ogoshi, Jimmy Ray Parrish, Lauren Quinn, Ed Richard, William L. Rooney, J. Brett Rushing, Ronnie Schnell, Matt Sousek, Scott A. Staggenborg, Thomas Tew, Goro Uehara, Donald R. Viands, Thomas Voigt, David Williams, Linda Williams, Lloyd Ted Wilson, Andrew Wycislo, Yubin Yang, Vance Owens
Biomass Production Of Herbaceous Energy Crops In The United States: Field Trial Results And Yield Potential Maps From The Multiyear Regional Feedstock Partnership, Dokyoung Lee, Ezra Aberle, Eric K. Anderson, William Anderson, Brian S. Baldwin, David D. Baltensperger, Michael Barrett, Jurg Blumenthal, Stacy Bonos, Joe Bouton, David I. Bransby, Charlie Brummer, Pane S. Burks, Chengci Chen, Christopher Daly, Jose Egenolf, Rodney L. Farris, John H. Fike, Roch E. Gaussoin, John R. Gill, Kenneth Gravois, Michael D. Halbleib, Anna Hale, Wayne Hanna, Keith Harmoney, Emily A. Heaton, Ron W. Heiniger, Lindsey Hoffman, Chang O. Hong, Gopal Kakani, Robert Kallenbach, Bisoondat Macoon, James C. Medley, Ali Missaoui, Robert B. Mitchell, Ken J. Moore, Jesse I. Morrison, Gary N. Odvody, Jonathan D. Richwine, Richard Ogoshi, Jimmy Ray Parrish, Lauren Quinn, Ed Richard, William L. Rooney, J. Brett Rushing, Ronnie Schnell, Matt Sousek, Scott A. Staggenborg, Thomas Tew, Goro Uehara, Donald R. Viands, Thomas Voigt, David Williams, Linda Williams, Lloyd Ted Wilson, Andrew Wycislo, Yubin Yang, Vance Owens
Department of Agronomy and Horticulture: Faculty Publications
Current knowledge of yield potential and best agronomic management practices for perennial bioenergy grasses is primarily derived from small-scale and short-term studies, yet these studies inform policy at the national scale. In an effort to learn more about how bioenergy grasses perform across multiple locations and years, the U.S. Department of Energy (US DOE)/Sun Grant Initiative Regional Feedstock Partnership was initiated in 2008. The objectives of the Feedstock Partnership were to (1) provide a wide range of information for feedstock selection (species choice) and management practice options for a variety of regions and (2) develop national maps of potential feedstock …
A Transcriptome‑Snp‑Derived Linkage Map Of Apios Americana (Potato Bean) Provides Insights About Genome Re‑Organization And Synteny Conservation In The Phaseoloid Legumes, Jugpreet Singh, Scott R. Kalberer, Vikas Belamkar, Teshale Assefa, Matthew N. Nelson, Andrew D. Farmer, William J. Blackmon, Steven B. Cannon
A Transcriptome‑Snp‑Derived Linkage Map Of Apios Americana (Potato Bean) Provides Insights About Genome Re‑Organization And Synteny Conservation In The Phaseoloid Legumes, Jugpreet Singh, Scott R. Kalberer, Vikas Belamkar, Teshale Assefa, Matthew N. Nelson, Andrew D. Farmer, William J. Blackmon, Steven B. Cannon
Department of Agronomy and Horticulture: Faculty Publications
Apios (Apios americana; “apios”), a tuberous perennial legume in the Phaseoleae tribe, was widely used as a food by Native Americans. Work in the last 40 years has led to several improved breeding lines. Aspects of the pollination biology (complex floral structure and tripping mechanism) have made controlled crosses difficult, and the previous reports indicated that the plant is likely primarily an outcrosser. We used a pseudo-testcross strategy to construct a genetic map specific to the maternal parent. The map was built using single-nucleotide polymorphism markers identified by comparing the expressed sequences of individuals in the mapping population …
Enhancing Resolution Of Natural Methylome Reprogramming Behavior In Plants, Robersy Sanchez, Xiaodong Yang, Hardik Kundariya, Jose R. Barreras, Yashitola Wamboldt, Sally A. Mackenzie
Enhancing Resolution Of Natural Methylome Reprogramming Behavior In Plants, Robersy Sanchez, Xiaodong Yang, Hardik Kundariya, Jose R. Barreras, Yashitola Wamboldt, Sally A. Mackenzie
Department of Agronomy and Horticulture: Faculty Publications
We have developed a novel methylome analysis procedure, Methyl-IT, based on information thermodynamics and signal detection. Methylation analysis involves a signal detection problem, and the method was designed to discriminate methylation regulatory signal from background noise induced by thermal fluctuations. Comparison with three commonly used programs and various available datasets to furnish a comparative measure of resolution by each method is included. To confirm results, methylation analysis was integrated with RNAseq and network enrichment analyses. Methyl-IT enhances resolution of genome methylation behavior to reveal network-associated responses, offering resolution of gene pathway influences not attainable with previous methods.
Assessing Explanatory Factors For Variation In On-Farm Irrigation In Us Maize-Soybean Systems, Katherine E.B. Gibson, Haishun S. Yang, Trenton E. Franz, Dean E. Eisenhauer, John B. Gates, Paolo Nasta, Bhupinder S. Farmaha, Patricio Grassini
Assessing Explanatory Factors For Variation In On-Farm Irrigation In Us Maize-Soybean Systems, Katherine E.B. Gibson, Haishun S. Yang, Trenton E. Franz, Dean E. Eisenhauer, John B. Gates, Paolo Nasta, Bhupinder S. Farmaha, Patricio Grassini
Department of Agronomy and Horticulture: Faculty Publications
Irrigation exhibits large variation across producer fields, even within same region and year. A knowledge gap exists relative to factors that explain this variation, in part due to lack of availability of high-quality irrigation data from multiple field-years. This study assessed sources of variation in irrigation using a large database collected during 9 years (2005–2013) from ca. 1400 maize and soybean producer fields in Nebraska, central USA (total of 12,750 field-year observations). The study area is representative of ca. 4.5 million ha of irrigated land sown with maize and soybean. Influence of biophysical (weather, soil, and crop type) and behavioral …
Prospects For Increasing Sugarcane And Bioethanol Production On Existing Crop Area In Brazil, Fábio R. Marin, Geraldo B. Martha Jr., Kenneth Cassman, Patricio Grassini
Prospects For Increasing Sugarcane And Bioethanol Production On Existing Crop Area In Brazil, Fábio R. Marin, Geraldo B. Martha Jr., Kenneth Cassman, Patricio Grassini
Department of Agronomy and Horticulture: Faculty Publications
This article assesses sugarcane yield gaps (YG) in Brazil to determine the degree to which production can be increased without land expansion. In our scenario assessments, we evaluated how much of the projected sugarcane demand to 2024 (for both sugar and bioethanol) can be satisfied through YG closure. The current national average yield is 62% of yield potential estimated for rainfed conditions (i.e., a YG of 38%). Continuing the historical rate of yield gain is not sufficient to meet the projected demand without an area expansion by 5% and 45% for lowand high-demand scenarios, respectively. Closing the exploitable YG to …
Biomass Yield Of Warm-Season Grasses Affected By Nitrogen And Harvest Management, Chamara S. Weerasekara, Newell R. Kitchen, Shibu Jose, Peter P. Motavalli, Sougata Bardhan, Robert B. Mitchell
Biomass Yield Of Warm-Season Grasses Affected By Nitrogen And Harvest Management, Chamara S. Weerasekara, Newell R. Kitchen, Shibu Jose, Peter P. Motavalli, Sougata Bardhan, Robert B. Mitchell
Department of Agronomy and Horticulture: Faculty Publications
Native perennial warm-season grasses (NPWSG) have drawn interest as bioenergy feedstocks due to their high productivity with minimal amounts of inputs under a wide range of environments. Nitrogen fertility and harvest timing are critical management practices when optimizing biomass yield of NPWSG. Our objective was to quantify the impact of N fertilizer rate and timing in combination with harvest timing and frequency on NPWSG yield. Research was conducted in 2014 and 2015 on four field-plot locations in Missouri. The experiment was a split-plot design with three replications where N rate and harvest timing were the main and sub-plot treatments, respectively. …
Genome-Wide Association Study For Identification And Validation Of Novel Snp Markers For Sr6 Stem Rust Resistance Gene In Bread Wheat, Amira M. I. Mourad, Ahmed Sallam, Vikas Belamkar, Stephen N. Wegulo, Robert Bowden, Yue Jin, Ezzat Mahdy, Bahy Bakheit, Atif A. El-Wafaa, Jesse Poland, Peter S. Baenziger
Genome-Wide Association Study For Identification And Validation Of Novel Snp Markers For Sr6 Stem Rust Resistance Gene In Bread Wheat, Amira M. I. Mourad, Ahmed Sallam, Vikas Belamkar, Stephen N. Wegulo, Robert Bowden, Yue Jin, Ezzat Mahdy, Bahy Bakheit, Atif A. El-Wafaa, Jesse Poland, Peter S. Baenziger
Department of Agronomy and Horticulture: Faculty Publications
Stem rust (caused by Puccinia graminis f. sp. tritici Erikss. & E. Henn.), is a major disease in wheat (Triticum aestivium L.). However, in recent years it occurs rarely in Nebraska due to weather and the effective selection and gene pyramiding of resistance genes. To understand the genetic basis of stem rust resistance in Nebraska winter wheat, we applied genome-wide association study (GWAS) on a set of 270 winter wheat genotypes (A-set). Genotyping was carried out using genotyping-by-sequencing and ~35,000 high-quality SNPs were identified. The tested genotypes were evaluated for their resistance to the common stem rust race in …
Mapping Rootable Depth And Root Zone Plant-Available Water Holding Capacity Of The Soil Of Sub-Saharan Africa, John G. B. Leenaars, Lieven Claessens, Gerard B. M. Heuvelink, Tom Hengl, Maria Ruiperez Gonzalez, Lenny G. J. Van Bussel, Nicolas Guilpart, Haishun Yang, Kenneth G. Cassman
Mapping Rootable Depth And Root Zone Plant-Available Water Holding Capacity Of The Soil Of Sub-Saharan Africa, John G. B. Leenaars, Lieven Claessens, Gerard B. M. Heuvelink, Tom Hengl, Maria Ruiperez Gonzalez, Lenny G. J. Van Bussel, Nicolas Guilpart, Haishun Yang, Kenneth G. Cassman
Department of Agronomy and Horticulture: Faculty Publications
In rainfed crop production, root zone plant-available water holding capacity (RZ-PAWHC) of the soil has a large influence on crop growth and the yield response to management inputs such as improved seeds and fertilisers. However, data are lacking for this parameter in sub-Saharan Africa (SSA). This study produced the first spatially explicit, coherent and complete maps of the rootable depth and RZ-PAWHC of soil in SSA. We compiled georeferenced data from 28,000 soil profiles from SSA, which were used as input for digital soil mapping (DSM) techniques to produce soil property maps of SSA. Based on these soil properties, we …
Crop Residue Harvest Impacts Wind Erodibility And Simulated Soil Loss In The Central Great Plains, Yuxin He, Deann R. Presley, John Tatarko, Humberto Blanco-Canqui
Crop Residue Harvest Impacts Wind Erodibility And Simulated Soil Loss In The Central Great Plains, Yuxin He, Deann R. Presley, John Tatarko, Humberto Blanco-Canqui
Department of Agronomy and Horticulture: Faculty Publications
Crop residue removal can affect the susceptibility to soil wind erosion in climates such as those of the Central Great Plains, United States. Six on-farm trials were conducted in Kansas from 2011 to 2013 to determine the effects of winter wheat (Triticum aestivum L.), corn (Zea mays L.), and grain sorghum (Sorghum bicolor (L.) Moench), residue removal at 0, 25, 50, 75, and 100% of initial height on soil wind erosion parameters. Those parameters include soil surface random roughness (RR), and wind erodible fraction (EF; aggregates -1 for three hours. Threshold wind velocity required to initiate …
Genetic Diversity And Population Structure Of F3:6 Nebraska Winter Wheat Genotypes Using Genotyping-By-Sequencing, Shamseldeen Eltaher, Ahmed Sallam, Vikas Belamkar, Hamdy A. Emara, Ahmed A. Nower, Khaled F. M. Salem, Jesse Poland, Peter S. Baenziger
Genetic Diversity And Population Structure Of F3:6 Nebraska Winter Wheat Genotypes Using Genotyping-By-Sequencing, Shamseldeen Eltaher, Ahmed Sallam, Vikas Belamkar, Hamdy A. Emara, Ahmed A. Nower, Khaled F. M. Salem, Jesse Poland, Peter S. Baenziger
Department of Agronomy and Horticulture: Faculty Publications
The availability of information on the genetic diversity and population structure in wheat (Triticum aestivum L.) breeding lines will help wheat breeders to better use their genetic resources and manage genetic variation in their breeding program. The recent advances in sequencing technology provide the opportunity to identify tens or hundreds of thousands of single nucleotide polymorphism (SNPs) in large genome species (e.g., wheat). These SNPs can be utilized for understanding genetic diversity and performing genome wide association studies (GWAS) for complex traits. In this study, the genetic diversity and population structure were investigated in a set of 230 genotypes …