Other Life Sciences Commons^™

Open Source Solutions In Experimental Design: An Introduction To The Symposium, Richelle L. Tanner, Kirt L. Onthank

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The Open Science movement has increased dramatically in popularity with deserved calls to action around transparency, access to resources, and inclusion in our field. However, its practical applications within experimental design have been slow to uptake, with researchers unsure where to even start with the dizzying array of open source hardware and software solutions available. The perceived time investment and unknown cost, especially in implementing open source hardware, has stagnated the implementation of inexpensive experimental solutions, but we sought to increase awareness to lower the barrier to participation in this space. While there are countless technical and financial advantages to …

Genome Sequence Of Sn1, A Bacteriophage That Infects Sphaerotilus Natans And Pseudomonas Aeruginosa, K.M. Damitha Gunathilake, Denise M. Tremblay, Pier-Luc Plante, Ellen Jensen, Kenneth Nickerson, Sylvain Moineau

Kenneth Nickerson Papers

Phage SN1 infects Sphaerotilus natans and Pseudomonas aeruginosa strains. Its genome consists of 61,858 bp (64.3% GC) and 89 genes, including 32 with predicted functions. SN1 genome is very similar to Pseudomonas phage M6, which contains hypermodified thymidines. Genome analyses revealed similar base-modifying genes as those found in M6.

Phage SN1 was isolated in 1979 from activated sludge samples obtained from a wastewater treatment plant (Lincoln, Nebraska, USA) using S. natans ATCC 13338 as the host (1, 2). An early study showed that the siphophage SN1 has unusual bases in its genome as confirmed by cellulose thin-layer chromatography (1). Its …

A Winning Approach: Teaching Science Communication Skills Through Small-Group Workshops, Serena B. Gumusoglu, Maria Noterman Soulinthavong, Jennifer Barr

Higher Learning Research Communications

Objectives: Research almost always culminates in the communication of findings. Despite the necessity of grant and manuscript writing throughout academic careers, scientific trainees often receive little guided practice in written communication. To fill this gap, we designed, implemented, and evaluated a voluntary writing initiative for biomedical students at a research-intensive (R1) university in the midwestern United States called Writing Initiative in Neuroscience (WIN).

Method: WIN consisted of didactic and workshop components. The didactic component included discussions with topic-specific experts on writing grants and manuscripts for the public and for non-academic scientific careers. The workshop component consisted of small group-based peer …

Alfred Russel Wallace Notes 22: Stumbling Blocks To An Understanding Of Wallace's Worldview, Charles H. Smith

Faculty/Staff Personal Papers

The writings of Alfred Russel Wallace (1823−1913) present a challenge to modern readers, both for the large range of subjects he entertained, and his unique point of view. In this short treatment, ten ‘stumbling blocks’ to an appreciation of Wallace’s thought are outlined which, it is suggested, have caused problems of interpretation in the past.

An Overview Of The Extracurricular Polysaccaride Production Of Probiotic Lactic Acid Bacteria, Olujimi Babajide Olowokere

Theses (2016-Present)

The study focuses on a comprehensive review of lactic acid bacteria and their production of extracellular polysaccharide substrates (EPS). Two important factors are addressed in the work; and these are 1) identification of LAB stains found in the commercially sold daily milk, 2) significant factors impacting polysaccharide production. Motivation behind these focus points is to allow further inquiries and studies on exploring these strains of bacteria for human wellness promotion. With microbial EPS production being a recent interest of study among healthcare and food industries sectors, new species of bacteria are extensively exploited for further investigation to improve human health, …

Boletín Divulgativo Taller: Tratamiento Y Evaluación De La Calidad Del Agua Superficial (Río Magdalena, Girardot Cundinamarca), John Jairo Sandoval Valencia, María Aldaya Rodríguez, Dalia Xiomara Suarez Pulido, Diana Carolina Molina León, Jack Fran Armengot García Pérez, Hernán Darío Fontecha Tarazona

Boletín divulgativo

El siguiente documento presenta los resultados obtenidos en el taller: Tratamiento y evaluación de la calidad de agua superficial (río Magdalena – Girardot, Cundinamarca) realizado en el año 2019, para lo cual se dispusieron los recursos técnicos, logísticos y académicos derivados del proyecto Validación de técnicas analíticas (Volumétricas, Electrodos Selectivos y de Espectroscopia Visible) para el análisis de aguas de la región del Alto Magdalena, encaminando las actividades desarrolladas al entendimiento del manejo adecuado del recurso agua, así como al aprendizaje de diferentes procesos para el manejo y conservación de uno de los principales afluentes de nuestro país.

Tissue Decay Tested In Modern Metasequoia Leaves: Implications For Early Diagenesis Of Leaves In Fossil Lagerstätten, Caitlyn R. Witkowski, Qin Leng, Christopher W. Reid, Liang Feng, Hong Yang

Science and Technology Department Faculty Journal Articles

Sedimentary deposits yielding extraordinarily-preserved fossils (known as Lagerstätten) may provide significant insights into the physiology and environments of ancient plants, particularly when the fossils represent their original characteristics with limited diagenetic modifications. To better understand molecular, isotopic, and morphological changes during the early stages of diagenesis, degradation experiments were conducted in two time series: 1) a laboratory decay series using fungi on leaves over the course of a month and 2) a natural decay series with leaves collected from different stages of leaf senescence and early diagenesis. Both experiments used modern leaves of the dawn redwood Metasequoia glyptostroboides …

Manos En Acción, Sandra Patricia Carmona Urueña, Maria Nieves Avila Avila, Claudia Del Rocío Contreras Rodríguez

Ciencias de la Salud

La cartilla Manos en acción está dirigida a los trabajadores agrícolas y sus familias, contiene prácticas que orientan el uso racional y aprovechamiento de los recursos naturales disponibles en el medioambiente, y busca crear conciencia ambiental y disminuir la explotación y contaminación ocasionada a este, facilitará información acerca de estrategiasagroecológicas y el aprovechamiento racional de los recursos ambientales presentes en las veredas donde se cultiva y viven los trabajadores agrícolas. Está divida en seis unidades: agroecología, recorrido gira técnica, bioplaguicidas, tipos de fungicidas, abonos orgánicoslumbricultura.

Virtual Expeditions Facilitated By Open Source Solutions Broaden Student Participation In Natural History Research, Richelle L. Tanner, Talia Y. Moore

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

From its genesis in the Victorian era as an activity for the elite to today's emphasis on “Big Data” and continuous monitoring, natural history has a prominent role in scientific discoveries for many fields. However, participation in field expeditions is limited by funding, space, accessibility, and safety constraints. Others have detailed the active exclusion of minoritized groups from field expeditions and harm/discrimination faced by the few who do participate, but we provide one solution to broaden opportunities for participation in natural history: Virtual Expeditions. Virtual Expeditions are broadly defined as open source, web-facilitated research activities designed to analyze bulk-collected digital …

Utility Of The Motivation To Change Lifestyle And Health Behaviors For Dementia Risk Reduction Scale (Mclhb-Drr) Based On A North American Sample, Angelina E. Witbeck

Dissertations

As the population ages, the prevalence rates of dementia continue to increase. Without a cure or promising treatment for dementia, the best course of lowering the prevalence rates of dementia is through preventative measures. Through an electronic survey, the study utilized the MCLHB-DRR scale to determine whether (1) gender, age, educational background, and socioeconomic status will impact the motivational factors to change lifestyle and health behaviors to reduce the risk of developing dementia and (2) direct experiences with individuals that have a dementia diagnosis are likely to impact one's motivational factors to change lifestyle and health behaviors to reduce the …

Approach To Dual Base And Sugar Modification Of Adenosine, Cross-Dehydrogenative Coupling Reactions Of Quinazolinones, And A Novel Entry To Carbazolones And Indolones, Dellamol Sebastian

Dissertations, Theses, and Capstone Projects

Analogues of purine nucleosides are of interest due to their antiviral, antibacterial, and anticancer properties. Although there are large number of reports on C6-modification of 6-chloropurine nucleosides with alkyl amines via the S_NAr reaction pathway, there are fewer reports on comparable reactions with aryl amines. Notably, S_NAr reactions of 6-chloropurine nucleosides with electron-deficient aryl amines is a relatively understudied area. A simple method has been developed for the S_NAr reactions of 6-chloropurine ribonucleosides with electron-deficient-, electron-rich-, and electronically neutral aryl amines. Under the developed conditions, S_NAr reactions of 2’,3’,5’-O-(tert …

Identifying Optimal Stocking Strategies To Support Recovery Of An Endemic Lake Sucker, Dale R. Fonken

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Endemic fishes in the intermountain west experienced significant population declines in the 20th century due to a variety of disturbances, including habitat fragmentation, water development, and the introduction of non-native, predatory fish species. The combination of habitat degradation with increased predation risk can severely limit natural recruitment for native fish species, and in response, fisheries managers have employed a variety of recovery strategies to prevent extinction. Among the most prominent strategies is artificial propagation and subsequent release of individuals into the natural environment (i.e., stocking). Artificial propagation is an expensive endeavor, and when not coupled with a research component, can …

Atrazine Levels In Rural Nebraska Counties And Parkinson's Disease, Muhammad Zahid

Capstone Experience: Master of Public Health

Parkinson's disease (PD) is a multifactorial disorder, connecting both genetic susceptibility and environmental risk factors. Several epidemiological and experimental studies support the evidence that pesticides exposure is positively associated with enhancing neurodegenerative diseases. The high amount of atrazine used in Nebraska and increased PD cases led us to evaluate the association between the long-lived water-soluble pesticide atrazine and PD in Nebraska counties. A person's exposure to atrazine may come from inhalation, dermal absorption, and ingestion. Three types of atrazine data covering 1992 to 2017 were used for this study: applied atrazine, atrazine in surface water, and atrazine in groundwater. In …

Comparing Multiple Approaches To Reconstructing The Phosphorus History Of Marl Lakes: A Utah Lake Case Study, Mark R. Devey

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Freshwater lakes around the world have suffered from the increasing occurrence of harmful algal blooms in recent decades. One of the most pressing reasons water quality managers try to address harmful algal blooms is that some of the species that occur with them produce toxins which can affect humans, pets, and wildlife. In many lakes, the nutrient phosphorus controls whether these harmful algal and bacterial species can occur. Therefore, efforts to control harmful algal blooms often center around reducing inputs of phosphorus from a variety of sources within the watershed. Scientists and water quality managers have long been challenged by …

How Corrective Lens Choices Are Associated With The Self-Esteem Of College Students, Margaret Neenan

Honors Projects

If you wear glasses or contacts, which one do you wear more often, and why? How Corrective Lens Choices are Associated with the Self-Esteem of College Students is an observational study on 1) how corrective lens choices are associated with the self-esteem of college students, and 2) how do factors such as gender, ethnicity, finances, insurance, recreational and occupational use, or lens options recommended to a patient impact an individual’s choice of corrective lenses. The observational study shows that there is no significant difference in the self-esteem of college students who wore a specific corrective lens more often. However, research …

A Study Into The Impact Of Screen Time On Student Gpa, Mia Brown, David Santos, Akeisha Belgrave

Harrisburg University Research Symposium: Highlighting Research, Innovation, & Creativity

With advances in technology, the use of computers has become a common habit for most college students. Recent studies show that the amount of time spent on those devices can affect their grades. (Class Project)

The Rise Of Concentrated Animal Feeding Operations, Their Effects, And How We Can Stop Their Growth, Andrea Prisco

Dickinson Law Review (2017-Present)

Dramatic changes in the agricultural industry over the last century have led to the rise of concentrated animal feeding operations– industrial facilities that raise a large number of animals in confined spaces. Animals raised in these facilities suffer from poor quality of life and abuse. For humans, these facilities have had adverse effects on the environment and public health, but they are also associated with high productivity and low food costs. This Comment analyzes the effects of concentrated animal feeding operations on animal well-being, the environment, and public health. This Comment also analyzes current federal legislation that helps combat the …

An Overview Of The Forensic Analysis And Use Of Non-Human Dna, Kaelyn Long

Senior Honors Theses

DNA is present in every living organism on Earth. DNA is also present in a few non-living biological agents such as DNA-containing viruses, and is additionally unique to particular groups of organisms and often even to individuals. This characteristic allows DNA to be quite useful in forensic investigations. This study takes an in-depth look at the forensic use of non-human DNA. DNA analysis is a key component of many forensic investigations, but the majority of these analyses are focused on human DNA. This review examines the ways in which non-human DNA can be useful to forensic investigations. The various unique …

A Push For Inclusive Data Collection In Stem Organizations, Nicholas P. Burnett, Alyssa M. Hernandez, Emily E. King, Richelle L. Tanner, Kathryn Wilsterman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Professional organizations in STEM (science, technology, engineering, and mathematics) can use demographic data to quantify recruitment and retention (R&R) of underrepresented groups within their memberships. However, variation in the types of demographic data collected can influence the targeting and perceived impacts of R&R efforts - e.g., giving false signals of R&R for some groups. We obtained demographic surveys from 73 U.S.-affiliated STEM organizations, collectively representing 712,000 members and conference-attendees. We found large differences in the demographic categories surveyed (e.g., disability status, sexual orientation) and the available response options. These discrepancies indicate a lack of consensus regarding the demographic groups that …

Plants Used By Nyamwezi Traditional Health Practitioners To Remedy Sexually Transmitted Infections In Sikonge, Tanzania, David S. Kacholi, Halima Amir

Journal of Humanities and Social Sciences

This study aims to document medicinal plants used by Nyamwezi traditional health practitioners (NTHPs) in managing sexually transmitted infections (STIs) in Sikonge District. The data on medicinal plants were collected using a semi-structured questionnaire. A total of 23 NTHPs were interviewed. The findings revealed that 28 medicinal plants, belonging to 16 families and 25 genera, are used for the management of STIs in Sikonge. Most species belonged to family Fabaceae (17.9%), Apocynaceae, Combretaceae and Euphorbiaceae (10.7% each), and Olacaceae and Rutaceae (7.1% each). Out of the recorded plants, 45.7% are used to manage gonorrhoea, 25.7% syphilis, 17.1% vaginal candidiasis, 8.6% …

Mytrials: Clinical Trial Application Concept, Katie Hollister

Graphic Communication

A clinical trial’s success is dependent upon whether a patient attends their highly-structured clinical trial visit schedule, which may include both in-person clinic visits and virtual check-in visits. MyTrials is a clinical trial journey app prototype that enables patients to schedule, reschedule, and attend join their in-person or virtual clinic visits. This product seeks to reduce the burden that scheduling places on the patient, and provides trial-provided resources and a daily and weekly timeline to help patients navigate their clinical trial journey.

The Coxsackievirus And Adenovirus Receptor Has A Short Half-Life In Epithelial Cells, Poornima Kotha Lakshmi Narayan, James M. Readler, Mahmoud S. Alghamri, Trisha L. Brockman, Ray Yan, Priyanka Sharma, Vladislav Snitsarev, Katherine J.D.A Excoffon, Abimbola O. Kolawole

Department of Biology Faculty Scholarship and Creative Works

The coxsackievirus and adenovirus receptor (CAR) is an essential cellular protein that is involved in cell adhesion, cell signaling, and viral infection. The 8-exon encoded isoform (CAREx8) resides at the apical surface of polarized epithelia, where it is accessible as a receptor for adenovirus entering the airway lumen. Given its pivotal role in viral infection, it is a target for antiviral strategies. To understand the regulation of CAREx8 and determine the feasibility of receptor down regulation, the half-life of total and apical localized CAREx8 was determined and correlated with adenovirus transduction. Total and apical CAREx8 has a relatively short half-life …

Emory-Tibet Science Initiative: Changes In Monastic Science Learning Motivation And Engagement During A Six-Year Curriculum, Kelsey M. Gray, Cindy Achat-Mendes, Ann Cale Kruger, Tashi Lhamo, Rinchen Wangyal, Gelek Gyatso, Carol M. Worthman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Led by His Holiness the Dalai Lama, the initiative taken by the Tibetan Buddhist monastic community to connect with western science and scientists presents a unique opportunity to understand the motivations and engagement behaviors that contribute to monastic science learning. In this study, we draw on quantitative data from two distinct surveys that track motivations and engagement behaviors related to science education among monastic students. The first survey was administered at one monastic university in 2018, and the second follow-up survey was completed by students at two monastic universities in 2019. These surveys assessed the reception of science education related …

Fish And Invertebrate Use Of Restored Vs. Natural Oyster Reefs In A Shallow Temperate Latitude Estuary, Jonathan H. Grabowski, Christopher J. Baillie, Adam Baukus, Rachael Carlyle, F. Joel Fodrie, Rachel K. Gittman, A. Randall Hughes, David L. Kimbro, Juhyung Lee, Hunter S. Lenihan, Sean P. Powers, Kevin Sullivan

University Faculty and Staff Publications

Coastal marine habitats continue to be degraded, thereby compelling largescale restoration in many parts of the world. Whether restored habitats function similarly to natural habitats and fully recover lost ecosystem services is unclear. In estuaries, oyster reefs have been degraded by multiple anthropogenic activities including destructive fishing practices and reduced water quality, motivating restoration to maintain oyster fisheries and other ecosystem services, often at relatively high cost. We compared fish and invertebrate communities on recently restored (0–1 year post-restoration), older restored (3–4 years post-restoration), and natural oyster reefs to determine if and when restored reefs support functionally similar faunal communities. …

Population Dynamics, Relative Abundance, And Habitat Suitability Of Adult Red Drum (Sciaenops Ocellatus) In Nearshore Waters Of The North-Central Gulf Of Mexico, Crystal Hightower, J. Marcus Drymon, Amanda E. Jefferson, Matthew B. Jargowsky, Emily A. Seubert, Simon Dedman, John Mareska, Sean P. Powers

University Faculty and Staff Publications

In the Gulf of Mexico, the red drum (Sciaenops ocellatus) is an immensely popular sportfish, yet the Gulf of Mexico stock is currently managed as data-limited in federal waters. The results of the federal stock assessment conducted in 2016 for Gulf of Mexico red drum were not recommended for providing management advice. Consequently, we sought to address data gaps highlighted in the assessment by producing up-to- date overall and sex-specific growth models, standardized indices of relative abundance, and predictions of habitat suitability and by updating estimates of natural mortality. Using a time series for the period of 2006–2018, we assigned …

Responses Of Arthropods To Fire And How Pollinators And Pollination Services Are Affected By Fire Severity, Blyssalyn V. Bieber

Electronic Theses and Dissertations

Fires impact ecosystems globally and due to climate change, there are shifts in fire regimes that impact ecological communities which provide essential ecosystem services. Focusing on arthropods, fire can influence this ubiquitous animal group in various way. We performed a comprehensive meta-analysis evaluating how fires impact differing arthropod functional groups. We found that overall, fire negatively effects community level responses for most functional groups with herbivores as the only exception showing some positive effects of fire. We also studied mixed-severity fires that burned >20 years ago and compared floral visitor communities across fire severities. We implemented a pollinator exclusion experiment …

Public Perceptions Of Human Physical Interactions, Exhibition, And Conservation Of Tigers And Cheetahs, Abbie Knudsen

Graduate Theses/Dissertations

Tigers and cheetahs are common in the pet trade, public exhibits, and hands-on encounters with the public. Poor regulation of these experiences has resulted in numerous incidents worldwide in which a person was seriously injured or killed by captive big cats. Additionally, concerns for animal welfare have been raised by industry professionals. Prior research on primates has demonstrated exposing people to photographs of cats in different backgrounds can influence their attitudes about animals in captivity, but no study has addressed whether visual images affect human attitudes toward big cats. I used a survey that asked a series of questions about …

Climate Change And Environmental Sustainability Module: Activity Booklet, Fozia Parveen, Sara Hassan, Subhan Khan

Books

Dear readers (teachers, parents, and students), Thank you for accessing our activity booklet. The information booklet introduced concepts relating to climate change and environmental sustainability. In this booklet several cross cutting activities on various themes have been presented. The booklet contains ready-made activities containing but not limited to comic strips, experiments, conversations, writing, simple tag, cut and paste as well as research activities. We hope you enjoy, adapt and implement these activities in your community.

Human–Carnivore Conflicts In A Recently Established Pakistani National Park, Rukhsana Khatoon, Maqsood Anwar, Charles H. Nilon, Matthew E. Gompper

Human–Wildlife Interactions

Human–carnivore conflicts (HCCs) are increasing globally. These conflicts may encompass competition for food resources, crop and livestock depredations, and attacks on humans. Concerns over conflicts may result in retaliatory killings of carnivores and negative views of wildlife or landscape conservation. Yet, despite the economic and conservation implications of HCCs, data regarding the magnitude and severity of the conflicts may be lacking because many incidents are unreported. To better inform this issue, we compared HCC data for 2016 to 2018 obtained from official records of the Punjab Wildlife and Parks Department for a newly established national park in the Punjab Region …

Chronic Adolescent Stress As A Predictive Factor For The Risk Of Developing Ptsd-Like Symptoms In Adulthood, Grace K. Young

Theses and Dissertations

Post-traumatic stress disorder is a stress and trauma based psychological disorder that is defined by the DSM-IV as an anxiety disorder that affects approximately 7.8% of people in the United States. PTSD is when those who suffer a traumatic event have intense and distressing feelings, emotions, and memories for a prolonged period of time after the event. A prominent feature of PTSD is the impaired ability to properly extinguish a fear response after a dangerous trigger or stressor is no longer present, also known as safety learning. Stressors are threats perceived within the environment that activate a response within the …