Other Life Sciences Commons^™

Cultivating Collaboration In Biomolviz: Key Attributes For Building A Stem Educator Community Of Practice, Pamela S. Mertz, Charmita Burch, Roderico Acevedo, Josh T. Beckham, Didem Vardar-Ulu, Kristin M. Fox, Lauren A. Genova, Rachel M. Mitton-Fry, Swati Agrawal, Daniel R. Dries, Kristen Procko

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

BioMolViz is an educational community of practice (CoP) focused on creating resources to improve biomolecular visual literacy instruction and assessment. The community of life science instructors developed in three phases, beginning with a small Core Team that emerged from a conference session and established the domain of interest for the CoP. In-person workshops, supported by short-term funding, drove the initial expansion of the community and the development of shared activities in Phase 2. This CoP was sustained through intentional choices about how members interact, collaborate, and share work. As the community matured in Phase 3, it was supported by longer-term …

Surveying First-Year Stem Students’ Self-Reported Knowledge, Skills, And Attitudes Towards Teamwork, Gregory R. Goldsmith, Camilla Acosta

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The ability to work in a team is cited as a key outcome for many undergraduate Science, Technology, Engineering, and Mathematics (STEM) programs, both as a method for improving learning and as a highly desired trait for employers. Despite a growing focus on teamwork, our ability to design appropriate teamwork curriculum is limited by our poor understanding of what students arriving at university know about teamwork, what teamwork skills they consider themselves to possess, and their attitudes towards teamwork. We delivered a mixed-methods survey to first-year STEM undergraduate students (n = 205) to benchmark knowledge, skills and attitudes towards …

Using “You” As A Subject In Biology Assessment Questions: Examining Student Preferences For Second-Person Framing, Noelle Clark, Kate Hill, Jeremy L. Hsu

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

In college biology courses, exams and quizzes are often used to assess students’ knowledge and performance. Since assessments are a crucial part of biology classes, there has been a wide range of work examining how assessment questions are written, revealing that small changes in how such questions are worded may have large impacts on students’ reading comprehension and performance. One aspect that instructors consider when writing a question is subject framing, i.e., which individual, if any, is being placed as the focal point of the question. In this study, we focus on the following subject framings, an authentic scientist, a …

Bio 23 Human Anatomy & Physiology I Syllabus, Rujin Tian

Open Educational Resources

The syllabus for BIO 23 contains a course description, course objectives, course readings divided by week and a link to an OER textbook.

Bio 24 Human Anatomy And Physiology Ii, Rujin Tian

Open Educational Resources

The syllabus for BIO 24 contains a course description, course objectives, course readings divided by week and a link to an OER textbook.

A Distributed Model For Undergraduate Education In Environmental Remote Sensing: Increased Student Interest In Science And Sense Of Science Identity And Belonging, Gregory R. Goldsmith, Monae Verbeke, Jeremy Forsythe, Joshua B. Fisher

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

"We present results from a new open-access course in satellite remote sensing of the environment that uses evidence-based, active learning pedagogy to train the next generation of interdisciplinary scientists The course, called Observing Earth from Above, teaches students how to access, visualize, and communicate satellite remote sensing data from NASA’s ECOSTRESS instrument to address a variety of environmental challenges. The resources focus on follow-along tutorials for students and also include recorded lectures and interviews with remote sensing scientists."

Agent-Based Model Details For Quantifying Error In Drone-Based Animal Surveys: Animal Density, Distribution And Flight Patterns, Emma A. Schultz, Natasha Ellison-Neary, Landon R. Jones, Kristine O. Evans, Raymond B. Iglay

Research Data

The following dataset pertains to Python scripts of an agent-based model simulating various drone survey design and quantifying potential count bias of stationary animals in fixed landscapes as part of an accepted manuscript in Ecosphere. Simulated animals were distributed among five animal densities (n = 4, 9, 25, 49, 100 animals/survey area) and three distribution patterns (random, uniform, aggregated). Eight drone flight patterns surveyed a 4.16-km² landscape within constraints of real-world battery and line-of-sight limitations. The simplified landscape also provided 100% animal classification (i.e., all animals within image frame observed and identified).

A Guided Ungrading Example For Independent Research Projects In An Upper-Division Ecosystem Ecology Stem Course, Christine S. O'Connell

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Ungrading is a pedagogical approach that, in some iterations, emphasizes formative feedback and student self-assessment over traditional point-based grading. While increasingly popular in the humanities and social sciences, ungrading remains uncommon in STEM courses, particularly those that are content-intensive. This article presents a structured example of ungrading implemented in an upper-division ecosystem ecology course through a 7-week independent research project. Students used public or previously collected ecological data to investigate a scientific question, culminating in a short-format, manuscript-style research paper and a 10 min oral presentation. The project was scaffolded with multiple checkpoints, including structured reflections, peer review, and instructor …

“Asking For Help Feels Like A Weakness”: Factors Shaping First-Year Students’ Expectations Of Stem Course Office Hours, Jeremy L. Hsu, Grace Holick, Rebecca M. Green, Elaine Benaksas Schwartz, Melissa Rowland-Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Background

Office hours are one of the most ubiquitous resources for students in STEM courses. However, there has been only limited work examining what students think of STEM course office hours, and we are not aware of any past work that has examined (1) how students perceive STEM course office hours upon entering college, and (2) how these perceptions change over time and the factors that shape these perceptions and expectations of what will occur in office hours. Here, we utilize a longitudinal series of surveys to capture first-year students’ perceptions and expectancies for office hours at the beginning of …

Agent-Based Model Outputs Regarding Error Associated With Drone-Based Animal Surveys, Emma Schultz, Natasha Ellison-Neary, Landon R. Jones, Kristine O. Evans, Raymond B. Iglay

Research Data

Count results from different scenarios of an agent-based model simulating various drone flight patterns across a survey area with differing animal distributions (clumped, random, uniform). Each Excel worksheet contains count results from surveys with specific numbers of animals (n = 4, 9, 25, 49, 100) programmed within the agent-based model survey area.

Factors Influencing Student Motivations And Experiences In Stem Course Office Hours, Gabriella R. Dauber, Jeremy L. Hsu

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Office hours are a part of nearly all science, technology, engineering, and mathematics (STEM) courses, with many academic and affective benefits for students who attend. However, despite their ubiquity, there has only been limited past work examining the sources of knowledge students draw from to shape their perceptions of office hours, as well as the factors that influence students' experiences in STEM course office hours. Here, we conducted semistructured interviews with 20 students enrolled in an introductory STEM course to investigate what motivates students to attend STEM course office hours, the factors that shape their experiences in office hours, and …

Empowering Diversity: A Comprehensvie Approach To Minority Risk Management Education, Jahqethea Johnson

Applied Science Program: Theses

Federal programs are pivotal to the foundation of the United States agricultural sector. Program payments impact the economic well-being of agricultural producers, yet accessibility, outreach and education disparities remain prevalent among socially disadvantaged producer and agriculturists. From 2020-2024, an average of $21.7 billion dollars in federal agricultural payments have been paid to producers. Although federal funding historically supports commodity crops, livestock producers also depend on a distinct set of federal risk management programs, which are often less visible but pertinent for operational sustainability. There is a growing focus on the need for addressing disparities faced by socially disadvantaged producers and …

Using Mathematical Modeling To Study The Dynamics Of Legionnaires’ Disease And Consider Management Options, Mark Z. Wang, Christina J. Edholm, Lihong Zhao

Faculty Articles

Legionnaires' disease (LD) is a largely understudied and underreported pneumonic environmentally transmitted disease caused by the bacteria \textit{Legionella}. It primarily occurs in places with poorly maintained artificial sources of water. There is currently a lack of mathematical models on the dynamics of LD. In this paper, we formulate a novel ordinary differential equation-based susceptible-exposed-infected-recovered (SEIR) model for LD. One issue with LD is the difficulty in its detection, as the majority of countries around the world lack the proper surveillance and diagnosis methods. Thus, there is not much publicly available data or literature on LD. We use parameter estimation for …

Training The Brain For Better Aging, Abby Martin

Honors Projects

Aging is associated with natural changes in brain function, but certain interventions can help sustain cognitive health and mitigate risks of neurodegenerative diseases such as Alzheimer’s. This presentation explores the significance of brain fitness as a non-pharmacological approach to enhancing cognitive function. It covers the normal aging process of the brain, key indicators of abnormal aging, and the impact of Alzheimer’s disease, including genetic predispositions and current treatment limitations. Emphasis is placed on brain training exercises, such as puzzles, board games, video games, and nostalgia-based activities, which have been shown to improve memory, attention, and problem-solving skills. Additionally, the role …

Gubic: The Global Urban Biological Invasions Compendium For Plants, Daijiang Li, Luke J. Potgieter, Myla F. J. Aronson, Irena Axmanová, Benjamin Baiser, Marta Carboni, Laura Celesti-Grapow, Sonja Knapp, Ingolf Kühn, Ana Carolina Lacerda De Matos, Zdeňka Lososová, Flavia A. Montaño-Centellas, Petr Pyšek, David M. Richardson, Lauren B. Trotta, Rafael D. Zenni, Sarel S. Cilliers, Bruce D. Clarkson, Amy J. S. Davis, Rebecca W. Dolan, Marcin M. Dyderski, Franz Essl, Orou G. Gaoue, Joanne Gui, Charly Géron, Gustavo Heringer, Cang Hui, Anzar A. Khuroo, Stefan Klotz, Peter M. Kotanen, Holger Kreft, Frank A. Sorte, Jonas J. Lembrechts, Bernd Lenzner, Christopher A. Lepczyk, Scott Macivor, Cristina Martínez-Garza, Akira S. Mori, Charles Nilon, Jan Pergl, Stefan J. Siebert, Alyona S. Tretyakova, Toby P. N. Tsang, Kei Uchida, Mark Van Kleunen, Montserrat Vilà, Hua-Feng Wang, Patrick Weigelt, Peter Werner, Nicholas S. G. Williams, Marten Winter, Marc Cadotte

Scholarship and Professional Work - LAS

Abstract Urban areas are foci for the introduction of non-native plant species, and they often act as launching sites for invasions into the wider environment. Although interest in biological invasions in urban areas is growing rapidly, and the extent and complexity of problems associated with invasions in these systems have increased, data on the composition and numbers of non-native plants in urbanized areas remain scattered and idiosyncratic. We assembled data from multiple sources to create the Global Urban Biological Invasions Compendium (GUBIC) for vascular plants representing 553 urban centres from 61 countries across every continent except Antarctica. The GUBIC repository …

Investigating Student Noticing Of Quantitative Reasoning In Introductory Biology Labs, Jeremy L. Hsu, Sara Gartland, Joelle Prate, Charles Hohensee

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Quantitative reasoning (QR) is a key skill for undergraduate biology education. Despite this, many students struggle with QR. Here, we use the theoretical framework of student noticing to investigate why some students struggle with QR in introductory biology labs. Under this framework, what students notice when given new information and data influences how they process this information and connect it with other events to form new conceptions. Students must mentally isolate given features, create mental records of those features, and identify features or objects that they connect to existing knowledge. Identifying these features or objects is thus critical since they …

Charting A New Vision: Lessons On Vision & Change From A Network Of Biology Educators, Jeremy L. Hsu, Anjali Misra, Michael J. Wolyniak, Carlos C. Goller, Stephanie Mathews, Uma Swamy, Dina L. Newman, Michael E. Moore

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The 2011 Vision & Change report outlined several recommendations for transforming undergraduate biology education, sparking multiple pedagogical reform efforts. Among these was the Promoting Active Learning and Mentoring (PALM) network, an NSF-funded program that provided mentorship and training to instructors on implementing active learning in the classroom. Here, we provide a perspective on how members of the biology education community in PALM view the recommendations of Vision & Change, drawing upon our experiences both as members of PALM and as leaders of an associated project funded by another NSF grant that hosted PALM alumni at various conferences. These efforts …

Remodeling Pedagogical Evaluation Tools To Incorporate Student Self-Efficacy And Sense Of Belonging In Scientific Research, Richelle L. Tanner, Nicholas P. Burnett, Emily E. King, Anne E. Todgham

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Curated undergraduate research experiences have been widely used at colleges and universities for decades to build student interest, technical preparation, and confidence in the pursuit of scientific careers. Educators often employ standardized survey instruments to evaluate learning outcomes for research experiences, but many of these assessments consider only technical skill development and career interests and are not rooted in discrete pedagogical theories. As higher education aims to create inclusive and equitable learning experiences for students, we argue that pedagogical assessment tools for undergraduate research experiences need to expand to consider outcomes such as increased science literacy, confidence in relational “soft” …

Confronting Indecision, Lane Allison Murray

ENGS 15.11: Design and Education

This course aims to increase students' understanding of indecision and how to confront it. The class provides insight into how the fear of the unknown holds people back from making decisions and about understanding one's values as a means to combat indecision. Students and teachers alike explore instances of indecision and evaluate their own impulses & thought processes by reflecting on the deeper reasons for their choices. Students will increase their comfort level of asking themselves and their peers questions about the values that guide them and, in doing so, strengthen their relationships with themselves and others.

Reducing Dna Extraction Costs Through Factorial Design For The Dnadvance Kit, Carson J. Neal, Zachery D. Zbinden, Michael E. Douglas, Marlis R. Douglas

Biological Sciences Faculty Publications and Presentations

Objective

Extracting DNA is essential in wildlife genetic studies, and numerous methods are available. However, the process is costly and time-consuming for non-model organisms, including most wildlife species. Therefore, we optimized a cost-efficient protocol to extract DNA from the muscle tissue of White-tailed Deer using the DNAdvance kit (Beckman Coulter), a magnetic-bead-based approach. We devised a 3 × 3 factorial design using combinations of tissue mass (10 mg, 50 mg, or 100 mg) and reaction volume (25%, 33%, and 50% of the manufacturer's recommended volumes). DNA was extracted for N = 81 tissue sub-samples (9 replicates/treatment).

Results

Our target yield …

Exploring The Journey Of Stem Faculty Into Justice-Centered Pedagogy, Desiree Forsythe, Bryan Dewsbury, Jeremy L. Hsu

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

In higher education and science, technology, engineering, and mathematics (STEM), interlocking oppressions can lead to inequitable environments for those who hold marginalized identities. Instructors can play key roles in either exacerbating or mitigating these inequities through their pedagogical approaches and choice of curricular material. However, it remains unclear how instructors who self-identify as committed to justice achieve higher levels of consciousness around areas of injustice and develop the self-efficacy to dismantle barriers for students over time. Here, we draw upon critical race theory and critical white studies to investigate what events or life experiences influence STEM instructors to understand the …

Diatom Abundance In The Polar Oceans Is Predicted By Genome Size, Wade R. Roberts, Adam M. Siepielski, Andrew J. Alverson

Biological Sciences Faculty Publications and Presentations

A principal goal in ecology is to identify the determinants of species abundances in nature. Body size has emerged as a fundamental and repeatable predictor of abundance, with smaller organisms occurring in greater numbers than larger ones. A biogeographic component, known as Bergmann’s rule, describes the preponderance, across taxonomic groups, of larger-bodied organisms in colder areas. Although undeniably important, the extent to which body size is the key trait underlying these patterns is unclear. We explored these questions in diatoms, unicellular algae of global importance for their roles in carbon fixation and energy flow through marine food webs. Using a …

Natural Variation In Yeast Reveals Multiple Paths For Acquiring Higher Stress Resistance, Amanda N. Scholes, Tara N. Stuecker, Stephanie E. Hood, Cader J. Locke, Carson L. Stacy, Qingyang Zhang, Jeffrey A. Lewis

Biological Sciences Faculty Publications and Presentations

Background

Organisms frequently experience environmental stresses that occur in predictable patterns and combinations. For wild Saccharomyces cerevisiae yeast growing in natural environments, cells may experience high osmotic stress when they first enter broken fruit, followed by high ethanol levels during fermentation, and then finally high levels of oxidative stress resulting from respiration of ethanol. Yeast have adapted to these patterns by evolving sophisticated “cross protection” mechanisms, where mild ‘primary’ doses of one stress can enhance tolerance to severe doses of a different ‘secondary’ stress. For example, in many yeast strains, mild osmotic or mild ethanol stresses cross protect against severe …

Private Management Of African Protected Areas Improves Wildlife And Tourism Outcomes But With Security Concerns In Conflict Regions, Sean Denny, Gabriel Englander, Patrick Hunnicutt

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Protected areas can conserve wildlife and benefit people when managed effectively. African governments increasingly delegate the management of protected areas to private, nongovernmental organizations, hoping that private organizations’ significant resources and technical capacities actualize protected areas’ potential. Does private sector management improve outcomes compared to a counterfactual of government management? We leverage the transfer of management authority from governments to African Parks (AP)—the largest private manager of protected areas in Africa—to show that private management significantly improves wildlife outcomes via reduced elephant poaching and increased bird abundances. Our results also suggest that AP’s management augments tourism, while the effect on …

Philosophy In Science: Can Philosophers Of Science Permeate Through Science And Produce Scientific Knowledge?, Thomas Pradeu, Maël Lemoine, Mahdi Khelfaoui, Yves Gingras

Presidential Fellows Articles and Research

Most philosophers of science do philosophy ‘on’ science. By contrast, others do philosophy ‘in’ science (PinS), that is, they use philosophical tools to address scientific problems and to provide scientifically useful proposals. Here, we consider the evidence in favour of a trend of this nature. We proceed in two stages. First, we identify relevant authors and articles empirically with bibliometric tools, given that PinS would be likely to infiltrate science and thus to be published in scientific journals (‘intervention’), cited in scientific journals (‘visibility’), and sometimes recognized as a scientific result by scientists (‘contribution’). We show that many central figures …

Movement Data Of Wild Pigs At Sam D. Hamilton Noxubee Wildlife Refuge In Mississippi, Tyler S. Evans, Natasha Ellison, Melanie R. Boudreau, Bronson K. Strickland, Garrett M. Street, Raymond B. Iglay

FWRC Publications

Summary and full movement dataset for adult female wild pigs (Sus scrofa; n = 10) trapped and GPS-collared on the Sam D. Hamilton Noxubee National Wildlife Refuge (Refuge), 2020-2021, in Noxubee, Oktibbeha, and Winston counties of Mississippi. The movement dataset was cleaned by removing fixes that did not follow the 2-hour fix rate programmed for each collar (i.e., fixes with missed fixes or NAs before and after). The dataset has both "Date_Time" and "TimeDiff" columns that better illustrate this point. While all collars were deployed on adult females from unique sounders, it is worth noting that pigs 26628 …

"The Relevant History And Medical And Ethical Future Viability Of Xenotransplantation", Morgan Janes

Augustana Center for the Study of Ethics Essay Contest

Xenotransplantation, the transplantation of organs or tissues from one species to another, presents a complex nexus of medical, ethical, and cultural considerations. In this article, we delve into the multifaceted landscape of xenotransplantation, beginning with a thorough examination of its relevant historical trajectory. From early experiments to recent advancements, we chart the evolution of this field, setting the stage for a nuanced discussion. We then confront the central issue: the true medical viability of xenotransplantation and the looming specter of operative risk. By scrutinizing the ethical dilemmas inherent in xenotransplantation through a multicultural lens, we illuminate the diverse perspectives that …

An Interdisciplinary Experience, Reyna Vergara, Michael Dodson

OUR Assignment Repository

This proposal showcases the success of an interdisciplinary approach. It provides an overview of a project titled: "Cacao and Chocolate: A Powerful Legacy." It took place during Hispanic Heritage Month in 2023. The project aimed to explore the rich and multifaceted legacy of cacao and chocolate in Latin America, incorporating perspectives from various academic disciplines, including public history, chemistry, Spanish language, graphic design, culinary arts, and family science. The interdisciplinary nature of the project highlights the power of collaboration in research and education, serving as a model for integrating diverse fields of study.

The project was divided into two main …

Wrack Lines Volume 24, Number 1, Spring/Summer 2024, Gract Cajski, Paul Choiniere, Maggie Cozens, Owen Placido, Judy Benson

Wrack Lines

"Natural Effects: Tales of Our Dynamic Environment" is the theme of this issue, with articles about a research project using GoPro cameras on oyster cages; the exploding population of black sea bass in Long Island Sound; three research projects in Connecticut salt marshes; a children's book illustrator and author and her book about kelp farming; and a living shoreline project in Old Saybrook, CT.

Climate Change-Associated Declines In Water Clarity Impair Feeding By Common Loons, Walter H. Piper, Max R. Glines, Kevin C. Rose

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Climate change has myriad impacts on ecosystems, but the mechanisms by which it affects individual species can be difficult to pinpoint. One strategy to discover such mechanisms is to identify a specific ecological factor related to survival or reproduction and determine how that factor is affected by climate. Here we used Landsat imagery to calculate water clarity for 127 lakes in northern Wisconsin from 1995 to 2021 and thus investigate the effect of clarity on the body condition of an aquatic visual predator, the common loon (Gavia immer). In addition, we examined rainfall and temperature as potential predictors …