Marine Biology Commons^™

Visualizing Oceanographic Data To Depict Long-Term Changes In Phytoplankton, Patricia S. Thibodeau, Jongsun Kim

School of Earth, Environmental, & Marine Sciences Faculty Publications

Oceanographic time series provide an important perspective on environmental processes in ecosystems. The Narragansett Bay Long-Term Plankton Time Series (NBPTS) in Narragansett Bay, Rhode Island, USA, represents one of the longest plankton time series (1959-present) of its kind in the world and presents a unique opportunity to visualize long-term change within an aquatic ecosystem. Phytoplankton represent the base of the food web in most marine systems, including Narragansett Bay. Therefore, communicating their importance to the 2.4 billion people who live within the coastal ocean is critical. We developed a protocol with the goal of visualizing the diversity and magnitude of …

Fun Azores: A Functional Trait Database For The Meio-, Macro-, And Megafauna From The Azores Marine Park (Mid-Atlantic Ridge), Neus Campanyà-Llovet, Amanda E. Bates, Daphne Cuvelier, Eva Giacomello, Diana Catarino, Andrew J. Gooday, Björn Berning, Blanca Figuerola, Manuel A. E. Malaquias, Carlos J. Moura, Joana R. Xavier, Tracey Sutton, Laurence Fauconnet, Sofia P. Ramalho, Bárbara De Moura Neves, Gui M. Machado, Tammy Horton, Andrey V. Gebruk, Kirill Minin, Joël Bried, Tina Molodtsova, Mónica A. Silva, Anna Dilman, Antonina Kremenetskaia, Eudriano F. S. Costa, Jameson Clarke, Helen R. Martins, Christopher K. Pham, Marina Carreiro-Silva, Ana Colaço

Marine & Environmental Sciences Faculty Articles

Trait-based approaches that complement taxonomy-based studies have increased in popularity among the scientific community over the last decades. The collection of biological and ecological characteristics of species (i.e., traits) provides insight into species and ecosystem vulnerability to environmental and anthropogenic changes, as well as ecosystem functioning. Here, we present the FUN Azores trait database, describe our approach, evaluate its scope, compare it to other marine trait databases, and explore the spatial distribution of its traits with “functional maps.” While most of the available trait databases to date contain essential information to understand the functional diversity of a taxonomic or functional …

Evaluating The Effect Of Symbiodiniacea On Survival, Growth, And Acquisition Of Newly Settled Corals Of Three Caribbean Species, Michael B. Hood

All HCAS Student Capstones, Theses, and Dissertations

Symbiosis between corals and Symbiodiniaceae is critical to coral reef health. However, this mutually beneficial relationship is threatened by a variety of stressors. This study aims to assess if seeding newly settled corals with different species of Symbiodiniaceae promotes differences in survival, growth, and symbiont acquisition in corals. Three reef-building species (Colpophyllia natans, Orbicella faveolata, and Pseudodiploria strigosa) reared in sterile saltwater baths were seeded with one of four Symbiodiniaceae species (Breviolum minutum, Durusdinium trenchii, Fugacium kawagutii, and Symbiodinium microadriaticum). Coral survival, growth, and symbiont acquisition were assessed biweekly during the first two months and monthly …

Visualization Of Productivity Zones Based On Nitrogen Mass Balance Model In Narragansett Bay, Rhode Island, Jongsun Kim, Myung Hwangbo, Patricia S. Thibodeau, Georgia Rhodes, Emma Hogarth, Stewart Copeland

School of Earth, Environmental, & Marine Sciences Faculty Publications

Primary productivity in the coastal regions, linked to eutrophication and hypoxia, provides a critical understanding of ecosystem function. Although primary productivity largely depends on riverine nutrient inputs, estimation of the extent of riverine nutrient influences in the coastal regions is challenging. A nitrogen mass balance model is a practical tool to evaluate coastal ocean productivity to understand biological mechanisms beyond data observations. This study visualizes the biological production zones in Narragansett Bay, Rhode Island, USA, where hypoxia frequently occurs, by applying a nitrogen mass balance model. The Bay is divided into three zones - brown, green, and blue zones - …

Reef Fish Movement Dynamics And Recruitment To Artificial Habitat, Jade Carver

LSU Master's Theses

Artificial reefs provide critical habitat for fish in areas lacking benthic structure, yet our understanding of how artificial reefs function and develop is limited. Here, changes in reef fish community assemblages were monitored using baited remote underwater video (BRUV) surveys (n=6) before and after a new artificial reef was deployed. Movement of red snapper (Lutjanus campechanus, n=20) and gray snapper (Lutjanus griseus, n=20) between nearby platforms (n=3) and the new artificial reef was examined using acoustic telemetry, and residency was calculated for fish associated with platforms and the artificial reef …

Interactive Effects Of The Partial Pressure Of Co2, Temperature, And Nutrient-Limitation On The Physiology And Growth Of The Coccolithophore E. Huxleyi Grown On A 12:12 L:D Cycle Of Illumination, James Bradley

LSU Master's Theses

I studied the interactive effects of pCO2, temperature, and nutrient limitation on the growth and physiology of the marine coccolithophore, Emiliania huxleyi. This was done to look at the effect of climate change factors on the widespread and abundant calcifying marine organism as a predictor of what the future has to hold. The strain of E. huxleyi (PnB 272 B10) was grown on a 12:12 L:D cycle of illumination and exposed to either high or low pCO2 under nutrient-replete or nitrate-limited conditions across a temperature range of 10–28C. I examined the direct and interactive effects of temperature, pCO2, and nutrient …

Endemic Galapagos Tree Daisy Scalesia Pedunculata Threatened By Competition With Nonnative Blackberry Rubus Niveus, Heinke Jäger, Christian Sevilla, Bernhard Riegl

Marine & Environmental Sciences Faculty Articles

There is a debate whether invasive plants can induce extinction debt in native flora that is not immediately obvious. Competitive effects of invasions and how competition causes native biodiversity loss are complicated to evaluate. Experi-mental removal or introduction bears the most promise of demonstrating native species displacement mechanics. Over an eight- year period, we followed plots in the only remaining Scalesia pedunculata forest on Santa Cruz Island, Galapagos, where invading Rubus niveus was either removed or retained. Demographic param-eters and total recruitment failure in the presence of R. niveus suggest that S. pedun-culata may face local extinction in two decades …

Skeletal Anatomy Of The Pectoral Fin In Mudskipper Species From Terrestrial And Aquatic Habitats, Haodong Zhou, Cassandra M. Donatelli, Odette Laneuville, Emily M. Standen

Engineering Faculty Articles and Research

Mudskippers are a group of amphibious fishes in the family Oxudercidae, whose species inhabit a range of habitats from mostly aquatic to mostly terrestrial. Most of our understanding about habitat preference comes from natural history observations, particularly where they are collected (i.e., low intertidal vs. high intertidal regions). Mudskippers have undergone several morphological changes to accommodate a terrestrial life, including major changes to the pectoral and pelvic girdles. These changes result in a novel crutching gait, which mudskippers use to move over land. Though the appendicular morphology and crutching gait of mudskippers have been described in some species, few …

2021 Oyster Coverage Gis Layer For Mosquito Lagoon, Fl, Linda Walters, Melinda Donnelly, Gabriel Benson, Paul E. Sacks

CEELAB Research Data

Intertidal reefs of Crassostrea virginica (eastern oyster) provide ecologically valuable habitat in estuaries along the Atlantic coast of North America. In Mosquito Lagoon, a shallow-water estuary on the east coast of central Florida, USA, historical aerial imagery was used to document a 24% decline in the live C. virginica reef area between 1943 and 2009. Using 2021 imagery, every living and dead reef in the same region was manually digitized to identify changes during the intervening 12 years. Positive impacts of C. virginica reef restoration that took place between 2007 and 2021 were also digitized to quantify long-term restoration impact. …

Ocean Connectivity And Habitat Characteristics Predict Population Genetic Structure Of Seagrass In An Extreme Tropical Setting, Udhi E. Hernawan, Kor-Jent Van Dijk, Gary A. Kendrick, Ming Feng, Oliver Berry, Christopher Kavazos, Kathryn Mcmahon

Research outputs 2022 to 2026

Understanding patterns of gene flow and processes driving genetic differentiation is important for a broad range of conservation practices. In marine organisms, genetic differentiation among populations is influenced by a range of spatial, oceanographic, and environmental factors that are attributed to the seascape. The relative influences of these factors may vary in different locations and can be measured using seascape genetic approaches. Here, we applied a seascape genetic approach to populations of the seagrass, Thalassia hemprichii, at a fine spatial scale (~80 km) in the Kimberley coast, western Australia, a complex seascape with strong, multidirectional currents greatly influenced by extreme …

Oxygen And Hydrogen Isotopic Evidence That KamaʻEhuakanaloa (LōʻIhi) Seamount Hydrothermal Systems Are Recharged By Deep Pacific Seawater, Eric W. Chan, Brianna A. Alanis, Christopher R. German, Darlene S. S. Lim, John A. Breier

School of Earth, Environmental, & Marine Sciences Faculty Publications

We observed negative and positive δ18O and δ2H deviations from fluids collected at Kamaʻehuakanaloa (previously known as Lōʻihi) seamount relative to Pacific seawater from the same depth. Hydrothermal vents on the crater floor of Pele's Pit at Kamaʻehuakanaloa, at a depth of 1320 m, had δ18O and δ2H values as low as −0.19‰ and −0.3‰, respectively. Seawater collected within the caldera, within a zone 45 m above the crater floor, had δ18O and δ2H values as high as 1.15‰ and 6.5‰, respectively. In comparison, Pacific seawater at 1200 m and 1400 m at nearby station ALOHA exhibit intermediate δ18O and …

Life Cycle Assessment Of Calcium Oxide Pretreatment Of Corn Stover With Carbon Dioxide Neutralization For Ethanol Production, Jikai Zhao, Danyi Feng, Juhee Lee

School of Earth, Environmental, & Marine Sciences Faculty Publications

This work used life-cycle assessment (LCA) to determine the environmental and human health impacts of four ethanol production scenarios (S1: CaO pretreatment + H2SO4 neutralization + C6 yeast fermentation; S2: CaO pretreatment + CO2 neutralization + C6 yeast fermentation; S3: CaO pretreatment + H2SO4 neutralization + C6/C5 yeast fermentation; and S4: CaO pretreatment + CO2 neutralization + C6/C5 yeast fermentation), with the functional unit being 1 kg of 95 % ethanol. The LCA results showed that the total ozone depletion, global warming potential, smog, acidification, eutrophication, and ecotoxicity values were comparable when CO2 or H2SO4 were used to adjust the …

Decreased Moderate To Vigorous Physical Activity Levels In Children With Asthma Are Associated With Increased Traffic-Related Air Pollutants, Juan Aguilera, Soyoung Jeon, Amit U. Raysoni, Wen-Whai Li, Leah D. Whigham

School of Earth, Environmental, & Marine Sciences Faculty Publications

People with asthma, particularly young children, are more adversely aected by trac emissions-and regular exercise reduces asthma symptoms and improves lung function. We studied the relationship between air pollution and objectively measured physical activity in children with asthma who were attending a school near a freeway. We continuously monitored air pollutants-PM2.5, PM10, nitrogen dioxide (NO2), and ozone (O3)-at the school for 10 weeks and measured physical activity levels via accelerometry in children (n = 12, ages 6-12 years). Concentrations of PM2.5, PM10, and NO2 were negatively associated with moderate to vigorous physical activity (PM2.5 and PM10: p < .001; NO2: p = …

Linking The Metabolic And Ecological Fate Of Caribbean Ciguatoxins And Related Neurotoxins In Reef Herbivores, Jessica K. Gwinn

Graduate Theses and Dissertations (2019 - present)

Ciguatera poisoning (CP) is one of the most prominent seafood-borne illnesses worldwide, affecting between 25,000–500,000 people annually. Ciguatera is caused by the ingestion of seafood contaminated with algal-derived ciguatoxins (CTX), the precursors of which are produced by benthic and toxigenic dinoflagellates in the genera Gambierdiscus and Fukuyoa. These compounds enter marine food webs through herbivory and are subsequently transferred to higher trophic levels, undergoing complex metabolic biotransformations, which produce structurally related CTX derivatives. Consumption of CTX induces a variety of severe neurological, gastrointestinal, and/or cardiovascular symptoms beginning within hours and lasting for weeks to months following exposure. Despite the impact …

Cadmium And Salinity Stressor Antagonism On Vallisneria Neotropicalis, Christopher P. Mikolaitis

Graduate Theses and Dissertations (2019 - present)

Submerged macrophytes form the foundation of freshwater ecosystems. These organisms are sessile and are very susceptible to shifts in their environment. Heavy metals are of particular concern as they can be sequestered indefinitely in sediments and are readily taken up by rooted vegetation. In the presence of saltwater intrusions, these metals can interact with salt ions potentially changing their availability to submerged vegetation. In this study a freshwater macrophyte, Vallisneria neotropicalis, was used as a test species for interactive effects between Cd, a non-essential heavy metal, and salt stress. The metrics used to establish the individual as well as …

Applications Of Environmental Dna (Edna) To Detect Subterranean And Aquatic Invasive Species: A Critical Review On The Challenges And Limitations Of Edna Metabarcoding, Sakib Tahmid Rishan, Richard Kline, Md Saydur Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

The world is struggling to solve a devastating biodiversity loss that not only affects the extinction of treasured species and irreplaceable genetic variation, but also jeopardizes the food production, health, and safety of people. All initiatives aimed to conserve biodiversity rely heavily on the monitoring of both species and populations to get accurate spatial patterns and overall population assessments. Conventional monitoring techniques, such as visual surveys and counting individuals, are problematic due to challenges in identifying cryptic species or immature life stages. Environmental DNA (eDNA) is a relatively new technology that has the potential to be a faster, non-invasive, and …

State Of The Fisheries: Status Reports And Aquatic Resources Of Western Australia 2021/22, Department Of Primary Industries And Regional Development, Western Australia, S J. Newman, B S. Wise, K G. Santaro, D J. Gaughan

Status Reports of the Fisheries and Aquatic Resources

Aquatic resources within Western Australia (WA) are in good condition, and this has positioned WA as a global leader in sustainable fisheries management. The sustainable fisheries of WA continue to support our strong economy and regional communities. Nonetheless, the lack of a consistent approach to build in the knowledge of Traditional Owners remains a gap in our longer-term fisheries science in Western Australia.

Climate change and climate variability continues to impact fish stocks, challenging our ability to effectively monitor, assess, and manage fish stocks. We are continually working with our stakeholders, and the broader community to be adaptive, responsive, and …

Evaluating The Use And Performance Of Marine Protected Areas To Conserve Reef Fish Biodiversity In The Caribbean, Mathias Tjarko Cramer

Theses and Dissertations

Reef fishes are an integral part of life in the Caribbean, fulfilling essential roles in their native marine ecosystems and the many human communities that neighbor them. Perhaps most directly to humans, reef fishes and their fisheries are an essential source of dietary protein, and further support local human communities through employment opportunities. More indirectly, reef fishes fulfill numerous ecological roles that help maintain their native reef ecosystems, which, in turn, confer benefits to humans. For example, a recent analysis estimated that every square kilometer of coral reef generates an average annual income of $473,000 (USD), which would represent 23 …

Three-Dimensional Higher-Order Compressive Sensing For Raypath Separation In An Acoustic Waveguide, Fengyan Zhong

Journal of Marine Science and Technology–Taiwan

In an acoustic waveguide, the separation of multiple raypaths, especially close raypaths, is a challenging task in the presence of colored noise due to interference in the acoustic eld. In this paper, a three-dimensional higher-order compressive sensing method for raypath separation is proposed. The method is applied on an array-to-array experimental conguration where both emitter and reception arrays are used. With the array-to-array conguration, the raypaths are characterized by three parameters including arrival direction, departure direction, and arrival time. Furthermore, the performance of the proposed algorithm is illustrated by simulations and experiments. The numerical results based on simulation illustrate that …

Projection Of Sea Surface Temperature Based On Empirical Mode Decomposition And Its Application In Typhoon Number Forecast, Wen-Cheng Huang, Jung-Chen Lee

Journal of Marine Science and Technology–Taiwan

The primary objective of this paper is to demonstrate the applicability of empirical mode decomposition (EMD) in projecting non-stationary daily sea surface temperature (SST) series, and the other is to apply the projected series of SST to estimate the number of typhoons. The study focuses on an area ranging from 5°N~25°N and 110°E~170°E, collecting daily sea temperature data and typhoons records within this region. The findings conclusively indicate that the EMD-based data generation method proposed in this paper can effectively addresses the limitations of previous hydrological models in generating non-stationary series, signifying a significant advancement in hydrological time series modeling …

Impact Of Sediment Diversion For Coastal Restoration On Nitrogen And Phosphorus Biogeochemical Cycling In Coastal Louisiana, Usa, Mercedes M. Pinzon Delgado

LSU Master's Theses

Wetlands provide essential ecosystem services and functions, including improving surface water quality through nutrient removal. Louisiana experienced ~4,800 km² of coastal wetland loss between 1932 and 2016 due to high relative sea level rise and reduced sediment input from the Mississippi River (MR). The 2023 Louisiana Coastal Master Plan aims to restore Louisiana's degraded coastline through restoration projects, including sediment diversions. The Mid-Barataria Sediment Diversion project will reconnect MR sediment-laden water with Barataria Basin degrading marshes. The diversion will also deliver nitrate (NO₃^-) and soluble reactive phosphorus (SRP) to this basin, potentially negatively impacting water quality. …

The Effect Of Acidic Ph On Growth Kinetics, Biomass Productivity, And Prima-Ry Metabolite Contents Of Euglena Sp., Istini Nurafifah, Muhammad Andhi Hardianto, Tia Erfianti, Ria Amelia, Khusnul Qonita Maghfiroh, Dedy Kurnianto, Dwi Umi Siswanti, Brilian Ryan Sadewo, Renata Adaranyssa Egistha Putri, Eko Agus Suyono

Makara Journal of Science

Euglena is a microalga with the potential to be an environmentally friendly renewable energy resource. The pH value is a crucial factor in micro-algal cultivation. Changes in pH affect the growth and development of microalgae, including the production of biomass and primary metabolites, such as proteins, carbohydrates, and lipids. In this study, Euglena sp. was grown on Cramer-Myers medium and subjected to various acidic conditions. This study aimed to determine the effect of pH on the growth kinetics, biomass, carbohydrate, lipid, and protein contents of Euglena sp. The Euglena sp. culture was optimized at various pH values of 2.5, 3.5, …

Nutrient-Rich Submarine Groundwater Discharge Increases Algal Carbon Uptake In A Tropical Reef Ecosystem, Florybeth Flores La Valle, Julian M. Jacobs, Florence I. Thomas, Craig E. Nelson

All Faculty Open Access Publications

Submarine groundwater discharge (SGD) in high volcanic islands can be an important source of freshwater and nutrients to coral reefs. High inorganic nutrient content is generally thought to augment primary production in coastal systems but when this is delivered via a freshwater vector as is the case with SGD in this study, the effects on productivity are unclear. In the current literature, there is limited evidence for a direct association between SGD and primary productivity of reefs. To elucidate the response of primary productivity to SGD, we conducted spatially and temporally explicit in situ benthic chamber experiments on a reef …

It Pays To Be Bumpy: Drag Reducing Armor In The Pacific Spiny Lumpsucker, Eumicrotremus Orbis, R. C. Hoover, Olivia H. Hawkins, Jack Rosen, Conrad D. Wilson, Callie H. Crawford, Meghan Holst, Jonathan M. Huie, Adam P. Summers, Cassandra M. Donatelli, Karly E. Cohen

Engineering Faculty Articles and Research

Armor is a multipurpose set of structures that has evolved independently at least 30 times in fishes. In addition to providing protection, armor can manipulate flow, increase camouflage, and be sexually dimorphic. There are potential tradeoffs in armor function: increased impact resistance may come at the cost of maneuvering ability; and ornate armor may offer visual or protective advantages, but could incur excess drag. Pacific spiny lumpsuckers (Eumicrotremus orbis) are covered in rows of odontic, cone-shaped armor whorls, protecting the fish from wave driven impacts and the threat of predation. We are interested in measuring the effects of …

The Economic Value Of Sea Otters And Recreational Tourism In A California Estuary, Jessica A. Fujii, Charles S. Colgan, Anthony Castelletto, Michelle M. Staedler, Amy G. Wolfrum, Kyle S. Van Houtan

Journal of Ocean and Coastal Economics

The recovery of marine megafauna can lead to improved ecosystem function and services, but not all stakeholders may benefit equally. Quantifying the local economic value of a species’ presence may appeal to broader range of stakeholders when developing conservation strategies. This study aims to examine the economic effect recreational activities can have on a local region, and to determine what role the presence of southern sea otters (Enhydra lutris nereis) had on the value visitors placed on the visit and the area’s preservation. We surveyed visitors to Elkhorn Slough, a small estuary in California known for diverse wildlife, …

On The Edge Of The "Er-Ocean" State, Mariesa Travers

Masters Theses

This thesis will explore how hard coastal infrastructure methods can be redesigned by softening the coastal edge to support the ecosystem and enhance public access to the beach. By referencing and arguing against techniques used by the U.S. Army Corps of Engineers (USACE) as a solution to deal with coastal erosion, this process will propose a regenerated design system. Through a series of material experiments, this research works with natural processes and flows, to create transitory systems that erode and ebb with the coast.

Spatial Variation And Antecedent Sea Surface Temperature Conditions Influence Hawaiian Intertidal Community Structure, Rebecca J. Ward, T. Erin Cox, Anuschka Faucci, Florybeth Flores La Valle, Joanna Philippoff, Jessica L. B. Shaefer, Ian M. Ware, Matthew L. Knope

All Faculty Open Access Publications

Global sea surface temperatures (SSTs) are increasing, and in Hawaiʻi, rates of ocean warming are projected to double by the end of the 21st century. However, current nearshore warming trends and their possible impacts on intertidal communities are not well understood. This study represents the first investigation into the possible effects of rising SST on intertidal algal and invertebrate communities across the Main Hawaiian Islands (MHI). By utilizing citizen-science data coupled with high-resolution, daily SST satellite measurements from 12 intertidal sites across the MHI from 2004–2019, the response of intertidal algal and invertebrate abundance and community diversity to changes in …

Behavior Changes And Lc50 Of Dried Garlic (Allium Sativum) Acute Toxicity In Nile Tilapia (Oreochromis Niloticus) Juvenile [Research Note], Gregoria Erazo Pagador, Haydee Rose Dumaran Paciente, Blan Jericho Caloyloy

The Philippine Agricultural Scientist

Plant-based compounds are emerging substitutes for chemical treatments in aquaculture since they are known to cause less harm to both the environment and its organisms. Garlic (Allium sativum) is a popular herb that has a broad range of uses, especially in the control and treatment of bacterial and parasitic diseases. However, its toxicity to tilapia is not well-studied. Hence, this study was conducted to test the toxicity levels of garlic powder in juvenile Nile tilapia (Oreochromis niloticus) by determining the cumulative mortality and median lethal concentration (LC₅₀). Test fish were exposed through immersion in …

Reproduction, Early Development, And Larval Rearing Of The Climbing Perch Anabas Testudineus (Teleostei: Anabantidae) In Captivity, Frolan A. Aya, Reylan C. Gutierrez, Luis Maria B. Garcia

The Philippine Agricultural Scientist

Induced spawning, early development, and larval rearing of the climbing perch Anabas testudineus were examined under captive conditions. Five female climbing perch [125.33 ± 3.27 mm SL; 70.67 ± 5.59 g BW] were paired with apparently mature males (108.50 ± 3.97 mm SL; 39.27 ± 4.70 g BW) and induced to spawn with 5,000 IU human chorionic gonadotropin (hCG) + 0.5 mL Ovaprim kg BW^-1. All hCG + Ovaprim-injected fish spawned 9 – 11 h after hormone administration but saline-injected fish (control group) failed to spawn. Mean egg production per female, fertilization and hatching rates, and larval production …

Effects Of Intertidal Position On The Response To Oxygen And Desiccation Stress In The Common Acorn Barnacle, Balanus Glandula, Megan M. Dotterweich

Master's Theses

Sessile invertebrates in the rocky intertidal experience intermittent periods of air exposure due to tidal flux, presenting risks of temperature extremes, hypoxia, nutrient limitation, and most dangerously, desiccation. Microscale variation in severity and frequency of these risks is widely dependent on vertical position within the intertidal zone. Common acorn barnacles (Balanus glandula) have a wide vertical distribution in the intertidal, creating large differences in microhabitat between the highest and lowest individuals in the population. This study set out to explore whether tidal position dependent differences exist in the response to oxygen and desiccation stress in B. glandula. …