Marine Biology Commons^™

Evaluating Fungal Endophytes Inoculation As A Mechanism For Salt Tolerance In Juncus Roemarianus, Rani Badve

Honors Theses

Salinity stress is increasing in coastal and estuarine ecosystems due to increasing temperatures and the reduction of freshwater inputs via precipitation pattern changes. Elevated salinity can negatively affect plant survival, threatening the stability of coastal wetlands and the ecosystem services they provide. Juncus roemerianus is a common and dominant marsh plant in the Northern Gulf Coast that lives in varying salinities. Growing evidence suggests that root-associated fungal endophytes may contribute to enhanced stress tolerance; however, the response of fungal communities to salinity remains poorly understood.

This study evaluated how salinity influences the abundance and diversity of culturable root-associated fungal communities …

Acute Effects Of The Psychoactive Pollutant Fluoxetine On The Antipredator Behavior Of The Gulf Killifish (Fundulus Grandis), Semyra Reus

Honors Theses

Pharmaceutical contaminants are increasingly prevalent in aquatic environments, yet their sublethal effects on ecologically relevant behaviors remain poorly understood, particularly in estuarine systems. Selective serotonin reuptake inhibitors (SSRIs), such as fluoxetine, are of particular concern due to the conserved role of serotonin in regulating behavior across vertebrates. Here, we investigated how acute exposure to environmentally relevant concentrations of fluoxetine influences anti-predator behavior in Gulf killifish (Fundulus grandis), a key estuarine fish commonly found in saltmarsh habitats. Killifish were exposed to control (0 ng/L), low (17.8 ng/L), and high (596 ng/L) fluoxetine concentrations and subsequently tested in the presence …

Recruitment Of Chrysaora Chesapeakei On Floating Docks Versus Bulkhead Surfaces: Which Axis Is Foulset?, Alyssa Lamberto

Theses, Dissertations and Culminating Projects

Blooms of Chrysaora chesapeakei (bay nettles) have increased sharply in Barnegat Bay, New Jersey, reducing both ecological integrity and economic value. Because population expansion is driven primarily by the benthic polyp stage, where individuals attach to hard substrates and reproduce asexually, effective management must target the surfaces where polyps settle and clone themselves. The rapid growth of artificial infrastructure, particularly vinyl docks and bulkheads, has expanded available habitat for polyp recruitment. Scrubbing these structures has been shown to reduce ephyrae production, but it remains unclear whether both docks and bulkheads warrant equal management attention. This study compared recruitment on horizontal …

Differential Salinity Tolerance And Compositional Shift In Zooplankton Communities From Coastal And Inland Wetlands, Marisa Contreras

Theses, Dissertations and Culminating Projects

Anthropogenic salinization from road salt application has degraded freshwater ecosystems across the United States, yet the tolerance of freshwater communities to elevated salinity may depend on their historical exposure. Coastal systems experience natural salt intrusion through tides and storm events, potentially fostering greater salinity tolerance amongst resident organisms, while inland systems lack this exposure history. To investigate, I studied the abiotic and biotic responses of zooplankton communities from four wetlands across a salinity gradient to assess tolerance to experimental salt exposure. Two inland freshwater wetlands are subject to anthropogenic salinization from road salt runoff, while two coastal wetlands experience natural …

Ecological Insights And Management Implications Of The Global Migratory Connectivity Of Green Turtles, Jaime Restrepo, Dina Nisthar, Harris Wei-Khang Heng, Lily K. Bentley, Corrie Curtice, Sarah Deland, Ei Fujioka, Patrick N. Halpin, Sarah K. Poulin, Roldán A. Valverde

School of Earth, Environmental, & Marine Sciences Faculty Publications

Aim

Green turtles are a widely distributed and highly migratory species; despite extensive data on their movement, there is no species-specific global synthesis on the subject. Based on three decades of published literature and building on previous global analyses, we developed a global network model of migratory connectivity for green turtles to better understand their spatial biology.

Location

Global.

Time Period

1990–2022.

Major Taxa Studied

Green Sea Turtle (Chelonia mydas).

Methods

We conducted a structured literature review extracting georeferenced information on the movement of green turtles from 1990 to 2022, aggregating this information into a single connectivity model, …

Trawling For Clues: Examining Nefmc Herring Amendment 8, Christopher Santoro

Honors Scholar Theses

In 2007, almost twenty years ago, the Magnuson-Stevens Act changed the landscape of fisheries management in the US. Through the establishment of Fisheries Management Councils (FMCs), it paved the way for top-down management approaches that helped the government combat nationwide declines or collapses in fish stocks. Among the myriad responsibilities of the FMCs was the expectation that amendments to existing fisheries management plans would be a necessity to adapt to modern circumstances. This thesis focuses on New England Fisheries Management Council's (NEFMC's) Herring Amendment 8 (A8). This amendment, passed in 2021, attempts to lay the groundwork for sustainable management of …

Population Structure And Connectivity Of Atlantic Nurse Sharks (Ginglymostoma Cirratum) In The Bahamas And Outlying Areas, Baylie A. Fadool

School of Natural Resources: Dissertations, Theses, and Student Research

Understanding animal ecosystem dynamics and behavior at the individual and population levels is essential for identifying life-history patterns and important areas for management and conservation. Marine fish species often face minimal geographic barriers to movement, but environmental (temperature, salinity, current) or intrinsic barriers (philopatry, site fidelity) can dictate gene flow. Atlantic nurse sharks (Ginglymostoma cirratum) are an International Union for Conservation of Nature (IUCN) listed ‘vulnerable’ species and present a unique opportunity to investigate patterns of population structure and connectivity in large-bodied sharks. They are benthic and display reproductive philopatry, with recent work suggesting they have the capacity …

Examining Pathogenic Vibrio Abundance And Environmental Controls Across Macroalgae, Sediment, And Oysters, Alexandra H. Geisser, Abigail K. Scro, Roxanna Smolowitz, Robinson W. Fulweiler

Arts & Sciences Faculty Publications

Climate change is accelerating the geographic spread and abundance of pathogenic Vibrio species in coastal waters, posing growing threats to ecosystems and human health. We investigated the abundance and pathogenic gene presence of V. vulnificus and V. parahaemolyticus across three common estuarine substrates (macroalgae, sediment, and oysters) in a temperate estuary. Macroalgae consistently harbored the highest Vibrio counts in conjunction with elevated pathogenic gene frequencies, while oysters contained the lowest. Environmental conditions related to Vibrio abundance were substrate and Vibrio species specific. Temperature and salinity were most closely related to pathogenic Vibrio abundance in oysters. In contrast, pathogenic Vibrio abundance …

Biohybrid Robotic Jellyfish For Swimming-Enhanced Vertical Ocean Profiling, Kelsi M. Rutledge, Sean Colin, John H. Costello, Noa Yoder, Simon R. Anuszczyk, Kelly R. Sutherland, Brad L. Gemmell, John O. Dabiri

Arts & Sciences Faculty Publications

Ocean monitoring is essential for understanding climate change and marine ecosystem dynamics, yet achieving comprehensive global coverage remains a challenge in oceanography. Current technologies face limitations in cost, power, hardware, and depth capacity that restrict widespread monitoring capabilities. Here we show that biohybrid robotic jellyfish (Aurelia aurita) can serve as autonomous vertical ocean profilers by integrating microcontrollers with positively buoyant sensor payloads, achieving controlled vertical-profiling capabilities. Laboratory experiments demonstrated repeatable up–down trajectories, quantified force balance limits, and identified predictable, size-dependent descent swimming speeds. Field deployments in Massachusetts coastal waters and the open ocean off the Florida Keys demonstrated field operation …

Ecological Responses To Living Shoreline Restoration, Aaron S. Bland

Graduate Theses and Dissertations (2019 - present)

Coastal built communities and natural coastal ecosystems face similar and interrelated hazards: shoreline sediment erosion, shoreline retreat, and worsening storms, each of which is exacerbated by relative sea level rise. Living shorelines are coastal defense projects that incorporate natural habitats to provide more sustainable shoreline defense and improve the coastal ecosystem. Living shorelines have been widely adopted, but their performance has been highly variable, and the mechanisms of project success and failure are unclear. The overarching goal of this dissertation was to better understand the ecosystem responses to coastal restoration, focusing on the primary habitats of coastal salt marsh and …

Feeding Ecology In Coastal Systems, Randi L. Cannon

Graduate Theses and Dissertations (2019 - present)

Oysters (Crassostrea virginica) are critical foundation species in estuaries, providing numerous ecological and economic benefits. However, oyster populations have diminished worldwide. Effective oyster restoration and aquaculture require a mechanistic understanding of the physiological and environmental factors that govern oyster feeding, growth, and resilience under changing coastal conditions. We investigated how oyster ploidy and environmental conditions influenced oyster feeding and investigated how changes in abiotic conditions affected behavioral performance of oyster drills (Stramonita spp.), a key oyster predator. To better understand feeding responses and behaviors of both predator and prey we 1) used in-situ filter feeding assays to determine if feeding …

Low Methane Emissions From Nutrient-Rich Former River Channels In A Hydrologically Managed Dryland Delta, Siena Stassi, Jude A. Benavides, Chu-Lin Cheng, Marcelo Gomes Da Silva, Nicholas E. Ray, Nathan O. Barros, Rafael M. Almeida

School of Earth, Environmental, & Marine Sciences Faculty Publications

Anthropogenic stresses in dryland regions can alter hydrology, salinization, and biogeochemical processes. How these pressures influence methane (CH4) cycling and emissions from aquatic ecosystems remains poorly understood. Over the course of 1 year, we measured diffusive and ebullitive CH4 emissions from resacas—shallow, hydrologically managed distributary channels prevalent throughout the Lower Rio Grande Valley along the US–Mexico border. Despite warm, nutrient-rich waters, CH4 emissions from resacas were low, and more comparable to rates observed in estuarine systems. CH4 fluxes were positively related to temperature but negatively related to salinity and rainfall. Elevated salinity, driven by evaporation and source water from the …

Recovery Timeframe Is A Critical Component In Preserving Carbon Stocks In Disturbed Tropical Seagrass Meadows, Taylor Renee Condron, Timothy M. Smith, Paul H. York, Nicholas J. Murray, Pere Masque, Michael A. Rasheed

Research outputs 2022 to 2026

Seagrass meadows, though covering a small percentage of the ocean floor, play a critical role in marine carbon sequestration. However, the mechanisms behind this role remain uncertain due to challenges in mapping seagrass extent and flux, accounting for spatial variation in carbon storage, and incorporating site-specific histories. This study investigates the effects of short-term (≤10 years) seagrass loss on sediment carbon stocks within a large seagrass meadow in the Great Barrier Reef region. Using remote sensing data to construct a seagrass recovery timeline, combined with field sampling and assessments of ecological factors, we found higher sediment organic carbon in areas …

The Rise And Fall Of The World's Greatest Marine Biodiversity Hotspot, Alexandre C. Siqueira, Kiessling, Nussaïbah Raja, David R. Bellwood

Research outputs 2022 to 2026

Habitat condition and area shape global species distributions, with shallow-water reefs hosting a disproportional share of marine biodiversity. Although reef area is a well-established predictor of marine species richness, its historical context is less well understood. Here, we show that the rise of tropical marine biodiversity is closely tied to reef expansion in space and time. During the Early/Mid Miocene (23 to 11.6 million years ago), Indo-Pacific reefs reached unprecedented size and thickness, surpassing any reef systems in the past 66 million years. These massive reefs, likely driven by unique environmental, biotic, and tectonic conditions, fostered the expanding diversity and …

Comparing Microbial Communities Of Diseased And Healthy Isopora Palifera Corals And Adjacent Waters At The Cocos (Keeling) Islands, Sophie Preston, Jacquelyn Jones, Megan J. Huggett, Arne A.S. Adam, Nicole E. White, Kar Chun Tan, Zoe Richards

Research outputs 2022 to 2026

Growth anomalies (GAs) are coral diseases characterised by tumour-like skeletal lesions reported globally, yet their causes remain poorly understood. Microorganisms are integral to coral health, but the role of bacterial communities in GAs remains unclear. We investigated an outbreak of GAs in Isopora palifera at the Cocos (Keeling) Islands using 16S rRNA amplicon sequencing to compare bacterial communities of GA-affected and asymptomatic corals, surrounding water and potential pollution sources. Significant differences in bacterial beta diversity were observed across sites, with an interaction between location and coral health status. Coral and water samples hosted distinct microbial communities, but there was no …

Geospatial Assessment Of Agrivoltaic Opportunities And Land Use Requirements In Nigeria, Ifeoluwa Ezekiel Babarinde, Bashir Salisu, Jude A. Benavides, Engil Pereira, Steven M. Grodsky, Rafael M. Almeida

School of Earth, Environmental, & Marine Sciences Faculty Publications

Agrivoltaics, the co-location of agriculture and solar photovoltaic (PV) infrastructure, can deliver co-benefits like reduced plant drought stress and improved yields of shade-tolerant crops, particularly in water-scarce regions. Despite growing global interest, the technical potential and opportunities for agrivoltaics remain poorly understood in many regions facing both food and energy insecurity, such as sub-Saharan Africa. Here we provide a spatial assessment of agrivoltaic opportunities in Nigeria by integrating cropland distribution, solar resources, and water stress. We find that northern states—where cropland is abundant and water-stressed, solar irradiance is high, and electricity access remains low—offer the greatest potential for agrivoltaic systems …

Assessment Of Morphological Differences And Genetic Variation In Head Shape Of Florida Pompano Trachinotus Carolinus, Neriah Nicholas

Electronic Theses and Dissertations

Genomics research can inform selective breeding programs to improve broodstock and seedstock quality for the U.S. warmwater marine finfish aquaculture industry. Florida pompano Trachinotus carolinus serves as a model species for the industry due to its commercial value and ability to spawn in captivity. This study examined a growth abnormality observed in commercially produced juveniles in partnership with Aquaco Farms LLC. Twenty fish were collected, culled, and euthanized by Aquaco staff, then classified into two head types: “normal” and “concaved”. Eleven morphological measurements were recorded before and after freezing to assess head variation and storage effects. DNA from pectoral fin …

Histological Analysis Of Six Atlantic Scleractinian Coral Species Exposed To Three Hydrocarbons, 1-Methylnapthalene, Phenanthrene, And Toluene, Jalyn R. Lee

All HCAS Student Capstones, Theses, and Dissertations

Coral reefs are biologically diverse marine ecosystems that provide numerous goods and ecosystem services. These sessile organisms are vulnerable to anthropogenic impacts, habitat degradation, climate change, and pollution, particularly Petroleum hydrocarbon contamination. Previous research has characterized coral species' sensitivity to hydrocarbons, using a continuous passive dosing system, but the specific histological impacts of petroleum hydrocarbons remain underexplored. This study investigates the histological effects of three petroleum hydrocarbons, 1-methylnaphthalene, phenanthrene, and toluene, on six Atlantic scleractinian coral species: Acropora cervicornis, Porites astreoides, Porites divaricata, Solenastrea bournoni, Stephanocoenia intersepta, and Siderastrea siderea. Coral fragments were exposed to species-specific hydrocarbon concentrations, and …

Evaluation Of Sirna-Mediated Knockdown Of Heat Shock Protein 16.2 In Adult Acropora Cervicornis, Edward P. Gniffke, Benjamin D. Young, Keir J. Macartney, Michael S. Studivan, Ian C. Enochs, Erin E. Easton

School of Earth, Environmental, & Marine Sciences Faculty Publications

Acropora cervicornis is a critically endangered Caribbean coral species facing a precipitous decline due to disease and thermal bleaching. To combat the loss of ecologically important reef-building corals, novel molecular approaches can be used to understand mechanisms of resilience and ultimately provide a means to modulate coral performance. In this study, we tested a recently developed method for gene knockdown in adult corals that utilizes short interfering RNAs (siRNAs) and the RNA interference pathway. The Heat Shock Protein 16.2 (HSP16.2) gene in fragments of adult A. cervicornis was targeted for knockdown using a single siRNA construct. RT-qPCR analysis of HSP16.2 …

Elasmobranchii Oral Microbiome Diversity Within Southeast Florida: Implications Of Shark Zoonotic And Antibiotic Resistant Pathogens Associated With Human Interactions, Amanda Finnefrock

All HCAS Student Capstones, Theses, and Dissertations

Sharks are incredibly common in the Atlantic and Gulf waters surrounding Florida. Despite the prevalent nature of these animals, little research exists on the composition of their microbial communities (or “microbiomes”). Here we aim to determine the microbial makeup of the oral environment of sharks so that we can determine if there are any bacteria of clinical significance to humans, such as being antibiotic-resistant or having elevated capability for pathogenicity. A total of 41 samples were collected from the mouths and teeth of bull, Caribbean reef, great hammerhead, lemon, nurse, and sandbar sharks caught in Southeast Florida using sterile swabs …

Accelerating Marine Science And Technology Innovation Under Great Power Competition: Challenges And Recommendations, Qingbin Guo, Yongsha Xiong, Shifang Sun

Bulletin of Chinese Academy of Sciences (Chinese Version)

Against the backdrop of intensifying great-power competition, the core issues of global technological competition and cooperation are increasingly converging on the marine domain. The oceans are progressively becoming a critical strategic sphere for national development and security. At present, China is steadily advancing towards its goal of becoming a maritime power, achieving historic leaps in technological innovation such as shipbuilding and deep-sea exploration. Nevertheless, the path ahead for China’s marine science and technology innovation will inevitably face severe international circumstances and competition from established global maritime powers. Based on a review of global and Chinese progress in marine science and …

Construction Of China’S Marine Protected Area System In 15th Five-Year Plan, Ke Duan, Danhong Chen, Keqiang Li, Limin Han, Zhengyan Liu, Dongliang Lu, Xiulin Wang

Bulletin of Chinese Academy of Sciences (Chinese Version)

The establishment of the marine protected area (MPA) system constitutes a critical component of the national initiative to comprehensively advance the development of a nature reserve system centered on national parks. This study explores on domestic and international development trends from aspects such as conservation strategies, international policies, high seas protection, and development trends. It also sorts out and analyzes the construction status of marine protected area systems in China and the United States. Centering on issues in China related to spatial layout, management systems, policies and laws, scientific research support, high seas governance, and land-sea management, the study puts …

Evaluating The Geographic Patterns In Isotopic Composition For Nesting Hawksbill Sea Turtles In The Wider Caribbean By Coupling Satellite Telemetry And Stable Isotopes, Anna Kreiger

Electronic Theses and Dissertations

Combining satellite telemetry and stable isotope analysis offers a framework for inferring sea turtle foraging habitats when spatial isotopic gradients exist. We evaluated this combined approach using carbon (δ13C) and nitrogen (δ1⁵N) isotope values from critically endangered hawksbill turtles (Eretmochelys imbricata) nesting at Buck Island Reef National Monument, U.S. Virgin Islands (N=31), and Long Island (Jumby Bay), Antigua (N = 31). Nesting females were satellite-tracked to identify foraging areas and sampled for skin tissue, and Empirical Bayesian Kriging was used to generate basin-scale δ13C and δ1⁵N isoscapes. Tracked turtles foraged widely across the Caribbean Basin, including the Greater …

Evaluating Elisa-Based Domoic Acid Detection Methods In Fetal And Maternal Samples Of California Sea Lions (Zalophus Californianus), Deanie Woodruff, Emily Lickiss, Samuel Gardiner, Mia Gastile, Elizabeth Sandoval, Florybeth La Valle

Seaver College Research And Scholarly Achievement Symposium

Harmful algal blooms produced by the diatom Pseudo-nitzschia regularly expose marine mammals along the California coast to domoic acid (DA), a neurotoxin that bioaccumulates in marine food webs. In California sea lions (Zalophus californianus), domoic acid exposure is associated with seizures, hippocampal injury, and maternal-fetal transfer of the toxin that can result in abortion. Bloom events have led to large numbers of stranded sea lions along the California coast. Although some clinical and neurological effects of domoic acid toxicosis have been documented, especially with regard to the hippocampus, there is limited understanding of how domoic acid concentrations fluctuate over the …

Submarine Groundwater Discharge As A Potential Driver Of Bacterial Microbiome Shifts In Nearshore Coral Reef Ecosystems At Black Point, Maunalua Bay, Oahu, Francesca Rasi, Niyam Reddy, Emily Mendoza, Jayla Burson, Florybeth La Valle

Seaver College Research And Scholarly Achievement Symposium

Coral reefs thrive in primarily oligotrophic environments, depending on factors such as temperature and salinity for their stability. While moderate levels of nutrients sustain coral growth, excessive nutrient inputs promote algal blooms which can outcompete corals for space. Over the past century, Maunalua Bay (O'ahu, HI) has experienced dramatic development and increase in population, which has affected the water quality in the nearshore coral reefs of the bay. The main source of dissolved land-based inorganic nutrients in Black Point is submarine groundwater discharge (SGD), which is a chronic freshwater vector that is enriched with nitrates, phosphates, silicates, and more. Because …

Applications Of Machine Learning In Enhancing Evaporation Estimation For Small Reservoirs: A Case Study In Semi-Arid South Texas, Syed Muhammad F Abdullah, Chu-Lin Cheng, Jude A. Benavides, Jungseok Ho, Rafael M. Almeida

School of Earth, Environmental, & Marine Sciences Faculty Publications

Small reservoirs in semi-arid regions experience substantial evaporative losses but are rarely monitored at daily scales. A multi-reservoir machine learning (ML) framework was developed to estimate daily open-water evaporation. Empirical models (Penman, Penman-Monteith, Priestley-Taylor, Bowen Ratio Energy Budget) andabenchmark combination method (Daily Lake Evaporation Model-DLEM) were compared against ML models. Predictors combined gridded meteorology (gridMET) with reservoir attributes (surface area, average depth, maximum depth, and fetch). ML models (Random Forest-RF, Decision Tree-DT, K-Nearest Neighbor-KNN, and Support Vector Regression-SVR) were trained on four reservoirs using data from 2018 to 2025. Results from ML models were further validated using both DLEM and …

Changes In Depression, Eating, Sleep, And Emotion Regulation In Air Force Rotc Cadets After The 12-Wk Star Training Program, Antonella V. Schwarz, Hunter Haynes, Sheena Puleali’I, Jacob Mota, Molly F. Johnson, Maria G. Kaylor, Andrew Addison, Robyn Braun-Trocchio, Austin J. Graybeal

Faculty Publications

Introduction: – Reserve Officer Training Corps (ROTC) cadets must balance collegiate demands with military preparation, leaving them vulnerable to psychological stressors. While structured strength and conditioning (S&C) programs enhance physical readiness, their impact on psychological health in cadet populations remains unclear. This study evaluated changes in depression, eating behaviors, sleep quality, and emotion regulation during a 12-wk S&C program. Methods: – Forty-nine U.S. Air Force ROTC cadets (21 female, 28 male; age: 20 ± 2 yr; body mass index: 24.2 ± 4.4 kg·m⁻²; body fat %: 27.1 ± 9.0%) completed the Supporting Tactical Athlete Readiness (STAR) program, a …

Ratfish (Chimaera Monstrosa) Chondocranium, Riley B. Glogowski, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Morphology, Phylogeny And Distribution Of Scaeurgus (Cephalopoda: Octopoda) In Southeast Pacific Seamounts, Sergio A. Carrasco, Christian M. Ibáñez, Andrea I. Varela, Jan M. Tapia-Guerra, Erin E. Easton, Javier Sellanes

School of Earth, Environmental, & Marine Sciences Faculty Publications

Octopuses of the genus Scaeurgus inhabit upper bathyal benthic habitats and are composed of five recognized species. In this study, we conducted morphological and molecular phylogenetic analyses of two individuals of Scaeurgus and provided additional field observations of the genus in seamounts of the Nazca and Salas y Gómez ridges (southeast Pacific Ocean) over the last six years. Specifically, two specimens of Scaeurgus were collected at 234 m depth in 2019 during the EPIC oceanographic cruise onboard the R/V Mirai (JAMSTEC, Japan), and five other specimens were video recorded at depths between 210 and 340 m during three oceanographic expeditions …

The Effects Of Climate Change On Competition And Recovery From Disturbance In An Iconic Marine Community, Lauren Tibbits

Senior Theses

This paper explores how the recovery of populations of Semibalanus balanoides is affected by climate variation. In intertidal marine ecosystems, larval recruitment is important in shaping all ecological processes. S. balanoides is a cold-water barnacle species that is competitively dominant over Chthamalus montagui and C. stellatus, two warm-water species. This competitive interaction is well studied, though it is not understood how that competition influences the recovery of S. balanoides after a disturbance nor how this process varies over a temperature gradient. 19 sites were studied across the United Kingdom, spanning from northern Scotland to southwestern England. At each site, a …