Marine Biology Commons^™

Fiddler Crab Gut Microbiomes As An Indicator For Eutrophication Due To Waste-Water Contamination In Estuaries, Madison L. Geraci

Honors Theses

Estuaries are unique biogeochemical zones in coastal systems that provide a myriad of ecological functions: providing habitat for critically important fishery species, diverse species of plants and animals, and contributing to nutrient cycling. Estuaries are vulnerable to anthropogenic stressors as they are intersections between marine and terrestrial communities and are often the hotspot of coastal development and activity. Estuarine sediments act as repositories for anthropogenic contaminants, including excess nutrient runoffs and waste-water pollution that can cause states of eutrophication. Microorganisms are sensitive to these environmental changes, presenting a unique opportunity of being useful bioindicators of environmental stress. Isolating microorganisms from …

West Coast Rock Lobster Resource Harvest Strategy, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Management Papers

Harvest strategies for Western Australia’s (WA) aquatic resources are formal documents developed by the Department of Primary Industries and Regional Development (DPIRD, the Department) to support decision-making processes that ensure the outcomes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002a) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). Harvest strategies are a key component of all contemporary fishery management systems and a requirement for certification under the Marine Stewardship Council (MSC). The objectives of ESD are reflected in the objectives of the Fish Resources Management Act 1994 (FRMA) and the Aquatic Resources Management Act …

Phenotypic Plasticity In Pigmentation: Investigating Coloration Patterns In Anablepsoides Hartii Population Responses To Environmental Variation, Jasdeep Kaur

2024 Spring Honors Capstone Projects - Archive

In this study, we investigated the color-changing capabilities of Trinidadian killifish, Anablepsoides hartii, through exposure to varied color conditions over defined periods of time. Our experiment aims to understand adaptive responses when killifish are subjected to different color backgrounds, exploring their mechanisms to change color. By subjecting the species to different environmental color variations, we sought to discern color change patterns, which could indicate adaptive responses related to camouflage, stress, behavior clues, and physiological adjustments. Carefully controlling environmental factors, we monitored and documented the fishes’ color changes, aiming to provide insights into the interplay between fish’s developmental plasticity and its …

Baseline Assessment And Early Effects Of A Network Of Marine Protected Areas, Victor Brun, Laurre Thierry De Ville D'Avray, Ma. May Saludsod, Roger D. Dolorosa, Niño Jess Mar F. Mecha, Kent Olson S. Sorgon, Joachim Claudet

Biology Faculty Publications

Marine protected areas (MPAs) can be a useful tool to manage coastal ecosystems, delivering both social and ecological outcomes. However, in many instances, relevant data is missing to conduct proper impact assessments, which is key to identifying ecological and social synergies and potential trade-offs, and to adapting management according to local objectives. The ecological effects of an MPA established in Palawan, Philippines, in 2016, were assessed. The most common species targeted by fisheries were identified by local fishers. Species size and number were collected through underwater visual census with n = 288 belt transects assigned in different sites and locations …

The Historical Biogeography Of Spiny Lobsters In The Genus Panulirus And The Influence Of Environmental Conditions On The Adaptive Evolution Of Mitochondrial Protein-Coding Genes In The Achelata, Alyssa Baker

All Theses

Contemporary and historical changes in marine environmental conditions influence biodiversity drastically. In marine invertebrates with highly dispersive planktonic larvae, diversification is facilitated or constrained by tectonic plate movements altering geography, prevailing current patterns, and climate. The decapod crustacean infraorder Achelata, which contains the spiny (fam. Palinuridae) and slipper (fam. Scyllaridae) lobsters, is characterized by a long-lived phyllosoma larvae stage. Panulirus is the most economically significant and speciose genus of spiny lobsters, with 20 recognized extant species and 5 subspecies distributed throughout shallow tropical and subtropical oceans worldwide. Diversification within these lineages has been proposed to be primarily driven by geological …

Harnessing Oyster Shells For Sustainable Coastal Restoration, Resilience And Ecosystem Enhancement, Falyn Mcquarrie

Capstone Projects

Climate change and coastal erosion are two major threats facing coastal wetlands and marshes, especially in Connecticut and Rhode Island. Climate change has been causing sea level rise and increased storm surge during natural disasters like hurricanes and tropical storms, exacerbating erosion. Improper management techniques are also a challenge that shorelines are facing, hard structures like seawalls can be expensive to maintain and can lead to further erosion. Living shorelines is an adaptive management approach that can be beneficial to climate change and erosion mitigation and can foster nursery environments that invite new species and juvenile fish to the area …

Relationship Between Marine Heatwaves And Diadema Antillarum Settlement In The Florida Keys, David Ogando Jr.

Theses, Dissertations and Culminating Projects

Ocean warming can have profound impacts on benthic marine invertebrates through direct physiological effects. Yet, the impacts of ocean warming on the long-spined sea urchin (Diadema antillarum), a keystone grazer on western Atlantic and Caribbean coral reefs, has received little attention. In the summer of 2023, the Caribbean basin experienced a strong marine heatwave event with sea temperatures ~1–3°C above average and the warmest on record in southern Florida. An ongoing field settlement sampling program for D. antillarum in the Florida Keys provided an opportunity to examine the correlative relationship between thermal exposure and larval settlement. Thermal exposure was quantified …

Spatiotemporal Patterns In Diadema Antillarum Settlement In The Florida Keys: Implications For Habitat Restoration, Julia Skowronski

Theses, Dissertations and Culminating Projects

The long-spined sea urchin (Diadema antillarum) is a keystone herbivore in the Caribbean and western Atlantic Ocean. It is found in various marine habitats including coral reefs and seagrass beds. On coral reefs, D. antillarum is part of a grazer assemblage that consumes fast-growing macroalgae and reduces competition with reef-building corals. In 1983–84 and again in 2022, D. antillarum experienced mass mortality, and presently populations have not recovered to their pre-1983 levels. Slow population growth is likely due to limited recruitment success under high post-settlement morality caused by a lack of suitable habitat. Here, patterns in larval settlement were examined …

Influence Of The Atlantic Inflow On Trace Metal Enrichments In Sediments And Particulate Matter Of The Nw Alboran Sea (Sw Mediterranean), Albert Palanques, Pere Puig, Pere Masqué, Enrique Isla

Research outputs 2022 to 2026

Trace metal contents and fluxes in downward particulate matter and dated sediment cores of the NW Alboran Sea are analysed in this study with the aim of assessing the role of the Atlantic inflow on their transport. Increases in Zn, Cu and Pb were detected in downward particulate matter collected by sediment traps after river flooding events and after the Aznalcollar mining spill. Their arrival coincided within the recently estimated time range for river particles discharged into the Gulf of Cádiz to reach the Alboran Sea, indicating that their transfer is enhanced during events of increased river inputs of contaminated …

Response Of Fish Assemblages To Increased Connectivity And Habitat Restoration In Bayou St. John, A Degraded Waterway In New Orleans, La, Alia Jones

LSU New Orleans Theses and Dissertations

Bayou St. John is a degraded waterway located within the City of New Orleans. The Bayou, which is disconnected from Lake Pontchartrain by floodgates, has undergone restoration efforts to improve connectivity through frequent floodgate openings and marsh habitat restoration outside of the floodgates. To assess possible responses of local fish assemblages to these restoration efforts, I analyzed long-term fish assemblage data from three sites located inside of the floodgates and one site located at the restored marsh outside of the floodgates. Two sites inside of the floodgates experienced significant changes in assemblages between the pre-opening period (2006-2012) and post-opening period …

Investigation On The Effects Of Biofouling On The Boundary Layer, Adam N. Bacon

LSU New Orleans Theses and Dissertations

This study is an investigation of the effect of biofouling on the boundary layer of a flat plate and a NACA 4-digit series foil. Three identical hydrofoils made of resin were placed in the Gulf of Mexico at Grand Isle, Louisiana, and observed and analyzed by marine biologists at the University of New Orleans for their species composition. The resulting biofouling that grew was primarily made up of barnacles and bryozoans. The foils were submerged in an open channel flume at zero incidence and subjected to a series of experiments whose arc-length Reynolds numbers ranged from approximately 13000 to 32000. …

Examining The Effects Of Food Supply On Eastern Oyster (Crassostrea Virginica) Larval Performance And Settlement Potential In Delaware Bay And Mississippi Sound, James C. Klein

Master's Theses

Oyster population maintenance and growth require sufficient larval stocks capable of timely development, growth, and successful metamorphosis, whereby larval performance and settlement potential determines the capacity for a larval cohort to effectively establish into an existing population. Exogenous factors influencing larval performance include temperature, salinity, and particularly food supply. Regarding food, a sufficiently abundant and nutritionally balanced diet composed of protein, lipids, and carbohydrates is critical for successful metamorphosis. The influence of exogenous factors on Crassostrea virginica settlement potential were examined in Delaware Bay and Mississippi Sound by incorporating in situ environmental conditions and food supply metrics into a well-established …

Effects Of Dissolved Oxygen And Ph On Eastern Oyster (Crassostrea Virginica) Growth, Karina D. Ledezma

Honors Theses

Coastal ecosystems, known for their abundant natural resources and role in environmental processes, are facing challenges posed by climate change, pollution and anthropogenic activities. Among these challenges is the expansion of hypoxic zones, characterized by low dissolved oxygen (DO) levels, which poses a significant threat to benthic organisms and oyster fisheries. This research investigates the interaction between hypoxia and pH dynamics, intensified by freshwater input, and the biomineralization of Eastern oysters (Crassostrea virginica). To explore these dynamics, experimental trials were conducted in 24 tanks, simulating normoxic, hypoxic, and fresh hypoxic conditions, to assess the impact of hypoxia on …

Potential Abatement Of Bay Nettle (Chrysaora Chesapeakei) Blooms Through Polyp Removal Within Lagoon Communities In Barnegat Bay, Nj, Anthony Luca Tamberelli

Theses, Dissertations and Culminating Projects

Jellyfish blooms have gained increased attention in recent decades due to their negative impacts on ecosystems and human activities. Urban development, pollution, and overfishing are some of many possible impacts that can bolster the frequency, duration, and intensity of jellyfish blooms. In Barnegat Bay, NJ, USA, the invasive bay nettle Chrysaora chesapeakei exerts top-down predation pressure on zooplankton, including ctenophores, hydrozoans, crustaceans, and ichthyoplankton. Bay nettle populations rely on hard substrates for larval settlement and polyp clonal growth. To determine whether abatement efforts targeted at bay nettle polyps can disrupt the life cycle and limit medusae populations, a three-year sampling …

Toxicokinetics And Toxicodynamics Of Radium-226 In An Estuarine Sentinel Species Geukensia Demissa, Sarah Donaher

All Dissertations

The historical use of radioluminescent objects, most notably those containing radium-226 (²²⁶Ra)-based paint, has contributed to contemporary environmental contamination of radioactive material, often near naval installations or other military-associated coastal sites. The risk to both human and environmental health from this small-scale, discrete radioactive material is challenging to predict due to large uncertainties in the source terms, bioavailability, and toxicity of these objects. The objective of this study was to provide information on the accumulation and toxicity of acute ²²⁶Ra exposure in a sentinel species to improve risk assessments for small-scale, coastal radiological contamination. The sentinel species …

Year-Round Co2 Emissions From The Drawdown Area Of A Tropical Reservoir: Strong Seasonal And Spatial Variation, Ícaro Barbosa, José R. Paranaíba, Sebastian Sobek, Sarian Kosten, Rafael M. Almeida, Vitor Duque, Natália Mendonça, Nathan Barros, Raquel Mendonça

School of Earth, Environmental, & Marine Sciences Faculty Publications

Highlights

• Drawdown areas emitted 80% of reservoir CO2 with just 1/5 area.

• Emissions from reservoir shorelines near forests were greater than from areas near grassland.

• CO2 emissions increase with the distance from the water.

• Estimates of reservoir drawdown CO2 flux vary by ∼ 300 % across the seasons examined here.

• There was no discernible difference in CO2 emissions between day and night-time.

• A significant increase in CO2 fluxes was observed 30 min after a rewetting event.

Abstract

A growing body of literature points to drawdown areas as important sources of atmospheric CO2 within reservoirs. Yet seasonal and temporal patterns of …

High Intraspecific Diversity Of Pocillopora Damicornis In Southeast Asia Reflects Adaptive Potential To Climate Change, Maria Lucille Carr

Theses and Dissertations

Marine heatwaves are increasing in intensity and frequency because of increased emissions of greenhouse gases. On coral reefs, warmer temperatures cause coral bleaching, mortality, and shifts in benthic composition. However, coral bleaching responses and survival vary geographically. Several hypotheses may explain such geographical differences in thermal tolerance, including the possibility that some localities may support higher intraspecific diversity than other localities, increasing the likelihood of survival of some individuals through heatwaves. Here we assessed geographic patterns of intraspecific genetic diversity in the ubiquitous coral Pocillopora damicornis. Intraspecific genetic diversity was assessed for 428 sequences across 44 sites in the Pacific …

Skimming Genomes For Systematics And Dna Barcodes Of Corals, Andrea M. Quattrini, Luke J. Mccartin, Erin E. Easton, Jeremy Horowitz, Herman H. Wirshing, Hailey Bowers, Kenneth Mitchell, María Del P. González-García, Makiri Sei, Catherine S. Mcfadden

School of Earth, Environmental, & Marine Sciences Faculty Publications

Numerous genomic methods developed over the past two decades have enabled the discovery and extraction of orthologous loci to help resolve phylogenetic relationships across various taxa and scales. Genome skimming (or low-coverage genome sequencing) is a promising method to not only extract high-copy loci but also 100s to 1000s of phylogenetically informative nuclear loci (e.g., ultraconserved elements [UCEs] and exons) from contemporary and museum samples. The subphylum Anthozoa, including important ecosystem engineers (e.g., stony corals, black corals, anemones, and octocorals) in the marine environment, is in critical need of phylogenetic resolution and thus might benefit from a genome-skimming approach. We …

An Examination Of The Eastern Nebraska And Western Iowa Flash Flood Event Of 6-7 August 1999, Catherine M. Zapotocny

National Oceanographic and Atmospheric Administration: Technical Reports and Related Materials

Flash flooding occurs each summer in eastern Nebraska and western Iowa. While 10-inch rains are extraordinary, it is not uncommon to have at least one excessive rain event during the annual convective season. A significant flash flood occurred in east central Nebraska and western Iowa the night of August 6, 1999 into the morning of August 7, 1999. Antecedent hydrologic conditions limited the loss of life, however considerable property damage resulted as the heavy rain fell over the urbanized areas in eastern Nebraska and western Iowa.

Several flash flood ingredients came together over the area. These meteorological factors are typical …

Euhaplorchis Sp. A Effect On Social Behavior And Familiarity Of Gulf Killifish (Fundulus Grandis), Hannah Bauman

All HCAS Student Capstones, Theses, and Dissertations

Trophically transmitted parasites may manipulate their hosts’ phenotype (e.g., behavior, physiology, morphology) to increase the likelihood of transmission to the definitive host. In fishes, stable social groups develop familiarity over time through repeated interactions among individuals, and social preferences are often developed due to familiarity. Consequently, fishes often shoal with familiar fishes, a behavior that is likely to be protective against predation. Parasites may alter fish social dynamics in two ways: by decreasing association with familiar individuals, thereby isolating infected fish and making them more susceptible to predation by definitive hosts; and/or by incentivizing uninfected individuals to avoid infected fish …

Trophic Ecology Of Black Swallowers (Scombriformes: Chiasmodontidae: Chiasmodon) In The Deep-Pelagic Gulf Of Mexico, Travis J. Kirk

All HCAS Student Capstones, Theses, and Dissertations

The ecology of deep-pelagic predatory fishes remains poorly understood despite their importance as ecosystem regulators and energy transfer vectors. This study investigated the trophic ecology of three species of the predatory fish genus Chiasmodon (“black swallowers”) in the Gulf of Mexico, a region that serves as an analog for the global low-latitude deep pelagial, the world’s largest cumulative ecosystem. Foraging habits (e.g., selectivity, chronology, daily ration) of an “advanced” evolutionary fish in a system that is otherwise dominated by basal fish taxa, were quantitatively estimated via high-resolution stomach content analysis. A quantitative dataset of both predator and prey abundance, the …

Microplastic Quantification On The Effect Of Endoparasite Communities In Florida Seabirds, Sarah N. Prieto

All HCAS Student Capstones, Theses, and Dissertations

Microplastics are being studied in a variety of different projects to better understand their impact and threat to wildlife species. Although there is an understanding that microplastics are affecting our wildlife, there are still questions about how coastal seabirds come to ingest them and how the ingestion is altering critical biological processes, such as that for endoparasite communities. This project aims to determine a better understanding of two main objectives: assessment of the presence of secondary ingestion of microplastics in coastal seabirds due to the fish species they prey on and relationship between microplastics and endoparasite communities' structure and state …

Edna Metabarcoding And The Construction Of Primers For The Identification Of Gulf Of Mexico Elasmobranchs And Selachii, Isabella Lima

Honors Projects

eDNA, or environmental DNA, is found free-existing in any environment. It can be extracted from its environment and used to identify organisms that were recently in the area. In recent years, eDNA metabarcoding has been used to help examine communities for overall species presence and biodiversity. This capstone sought to create a mock proposal for an eDNA survey of Gulf of Mexico elasmobranch and Selachii species due to their overall decline in numbers. Additionally, general and discriminatory PCR primers were created in-silico and assessed for initial quality. This capstone documents the feasibility of an eDNA study, constructing the necessary primers, …

Wild Seahorse Conservation And Industrial Growth Strategies: A Dual-Perspective Study, Shicheng Wang, Bo Li, Lanliang Yu

Bulletin of Chinese Academy of Sciences (Chinese Version)

The United Nations Decade of Ocean Science for Sustainable Development (2021–2030) prioritizes healthy oceans and sustainable development. Protecting marine biodiversity, promoting sustainable fisheries, and achieving global sustainability goals are critical concerns for the international community. This study addresses critical challenges in seahorse conservation and industrial development, including wild resource depletion, limitations in aquaculture technology, low-value industrial chains, and inadequate regulatory coordination. Through systematic analysis of current conservation status and industrial trends, establishing demonstration bases is proposed for seahorse resource protection and high-value utilization ("Hippocampus Hub"), guided by natural habitat integrity, scientific research capacity, industrial chain integration, and policy support. By …

Spotted Eagle Ray (Aetobatus Narinari) Jaw, Lili M. Mcelhill, Alison G. Novara, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Sharpnose (Rhizoprionodon Terraenovae) Jaw, Juliana N. Ottens-Rivera, Fiona Smith, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Jaw from 76cm total length (TL) Rhizoprionodon genus (Sharpnose), collected from Anglers Bait & Tackle on Feb 5th, 2024, by Juliana Ottens-Rivera

Rescape: Transforming Coral-Reefscape Images For Quantitative Analysis, Zachary Ferris, Eraldo Ribeiro, Tomofumi Nagata, Robert Van Woesik

Ocean Engineering and Marine Sciences Faculty Publications

Ever since the first image of a coral reef was captured in 1885, people worldwide have been accumulating images of coral reefscapes that document the historic conditions of reefs. However, these innumerable reefscape images suffer from perspective distortion, which reduces the apparent size of distant taxa, rendering the images unusable for quantitative analysis of reef conditions. Here we solve this century-long distortion problem by developing a novel computer-vision algorithm, ReScape, which removes the perspective distortion from reefscape images by transforming them into top-down views, making them usable for quantitative analysis of reef conditions. In doing so, we demonstrate the …

Genomic Population Structure Of Great Hammerhead Sharks (Sphyrna Mokarran) Across The Indo-Pacific, Naomi L. Brunjes, Samuel M. Williams, Alexis L. Levengood, Matt K. Broadhurst, Vincent Raoult, Alastair V. Harry, Matias Braccini, Madeline E. Green, Julia L. Y. Spaet, Michael J. Travers, Bonnie J. Holmes

Fisheries Research Articles

Context

Currently, little information exists describing the population structure of great hammerhead sharks (Sphyrna mokarran) in Australian waters. Aims

This study used single nucleotide polymorphisms to investigate fine-scale population structure in S. mokarran across the Indo-Pacific. Methods

DNA was extracted from 235 individuals across six Australian locations and a Red Sea outgroup. Population parameters were calculated and visualised to test structuring across locations. Key results

No fine-scale population structuring was observed for S. mokarran across the Indo-Pacific. However, population structuring occurred for all Australian locations when compared to the Red Sea outgroup. Conclusions

Findings suggest a single stock …

Changes In Reef Tourism’S Adaptive Capacity After Severe Climate Disturbances, Henry Bartelet, Michele Barnes, Lalu Bakti, Graeme S. Cumming

Quantitative Methods and Information Technology Faculty Publications

Knowledge about adaptive capacity and its determinants has increased significantly over the last decade. However, most research on adaptive capacity has been static, not considering how adaptive capacity might change over time, particularly after severe disturbances. We studied the adaptive capacity dynamics of Asian-Pacific reef tourism operators affected by coral bleaching and tropical cyclones compared with a control group with non-affected operators. We found that impacts from tropical cyclones were associated with frequent changes in adaptive capacity. Notably, we found a reduction in tangible attributes (assets and flexibility) of adaptive capacity, whereas intangible attributes (agency and social organization) increased. Our …

The Social And Economic Dimensions Of One Of The World’S Longest-Operating Shark Fisheries, Matias Braccini, Maddison Watt, Clinton Syers, Nick Blay, Matthew Navarro, Michael Burton

Fisheries Research Articles

Context

Social and economic information is limited for coastal commercial and recreational fisheries, particularly shark fisheries, which are perceived as unsustainable and as targeting sharks for fins.

Aims

To characterise the social and economic dimensions of one of the world’s few long-standing sustainable shark fisheries.

Methods

We reviewed historic data and surveyed stakeholders to understand the economic and social dimensions of the shark fishery currently operating in Western Australia.

Key results

Since the fishery’s historic peak, there has been a substantial reduction in the number of operating vessels and ports due to management intervention. For the vessels that have remained, …