Marine Biology Commons^™

Investigating The Acute Physiological Effects Of Effluent Crystal Violet On The Freshwater Bioindicator Daphnia Pulex, Hoang K. Ho

2024 Fall Honors Capstone Projects - Archive

This study examines the effects of acute exposure to crystal violet (CV) on the freshwater zooplankton Daphnia pulex in response to growing concerns over synthetic dyes from industrial runoff in aquatic ecosystems. The primary objective is to assess CV's impact on D. pulex's heart rate, mobility, morphology, and lethality via a series of acute exposure tests. 48-h acute toxicity (0-2000 μg/L), 48-h immobilization (0-180 μg/L), and 9-h heart rate (0-2,000 μg/L) tests were conducted using third-generation daphnids, followed by stereomicroscopic examination and statistical analysis. Results showed increasing mortality and decreasing mobility and heart rate with increasing CV concentration; the …

Global Patterns And Drivers Of Fish Reproductive Potential On Coral Reefs, Jeneen Hadj-Hammou, Joshua E. Cinner, Diego R. Barneche, Iain R. Caldwell, David Mouillot, James P.W. Robinson, Nina M.D. Schiettekatte, Alexandre C. Siqueira, Brett M. Taylor, Nicholas A.J. Graham

Research outputs 2022 to 2026

Fish fecundity scales hyperallometrically with body mass, meaning larger females produce disproportionately more eggs than smaller ones. We explore this relationship beyond the species-level to estimate the “reproductive potential” of 1633 coral reef sites distributed globally. We find that, at the site-level, reproductive potential scales hyperallometrically with assemblage biomass, but with a smaller median exponent than at the species-level. Across all families, modelled reproductive potential is greater in fully protected sites versus fished sites. This difference is most pronounced for the important fisheries family, Serranidae. When comparing a scenario where 30% of sites are randomly fully protected to a current …

Investigating Nekton Response To Changing Salinities In The Mississippi Sound: An Experimental And Statistical Approach, Adam Murray

Master's Theses

The Mississippi Sound provides nursery habitats for many coastal species and is recognized for its commercial fisheries. Previous freshening events linked to the Bonnet Carré Spillway, a Mississippi River flood diversion structure, proved catastrophic for oyster populations in the Mississippi Sound, but effects on mobile fish and shellfish species are not well-defined. The planned Mid-Breton Sediment Diversion (MBSD), an initiative to combat wetland loss, is also forecasted to lower salinities in the region, increasing the need to better understand responses of commercially and ecologically important species to freshening events. The objective of this study was to characterize effects of salinity …

Juvenile And Subadult Gulf Sturgeon (Acipenser Desotoi) Use Of The Pascagoula River Estuary, Sarah Stovall

Master's Theses

Gulf Sturgeon (GS) are an anadromous species currently listed as “Threatened” under the Endangered Species Act. They reside in habitats across the northern Gulf of Mexico including coastal rivers, estuaries, and marine waters, making annual migrations between freshwater and marine habitats for spawning/summer resting and feeding, respectively. Since past studies prioritize adult movement, understanding how and when juvenile and subadult GS use the Pascagoula River estuary (PRE), a complex, bifurcated river delta federally designated as critical habitat is necessary to improve conservation efforts. My thesis assessed juvenile and subadult GS use of the PRE across four years (2020-2024) by analyzing …

Socio-Ecological Drivers Of Anthropogenic Marine Debris Effects On Coral Reef Communities In The Florida Keys, Usa, Tokea Payton

All Dissertations

The Florida Keys reef tract has rapidly shifted from a structurally complex, hard coral-dominated reef to a less rugose, soft coral-dominated reef. Persistent anthropogenic stressors facilitate ecological transitions by including recreational and commercial fishing and increased anthropogenic marine debris. These artificial structures are becoming habitats for small marine taxa known as cryptofauna. Cryptofauna are among the most essential yet understudied reef taxa where little is known about their fate considering degrading coral reefs and increasing anthropogenic disturbance. With increased anthropogenic stressors on the marine environment, the SCUBA diving community has initiated extensive marine debris removal efforts to assist in cleaning …

Phytoplankton Responses To Changing Irradiance And Carbon Fertilization, Alison Siersma

Graduate Theses and Dissertations (2019 - present)

Phytoplankton play a crucial role in marine ecosystems due to their innate ability to fix carbon. As atmospheric CO2 levels continue to rise from fossil fuel combustion, the resulting increase in dissolved CO2 and the concurrent decrease in ocean pH are likely to impact the phytoplankton community. The response of phytoplankton to elevated CO2 can vary significantly among species and environmental conditions (e.g. light, temperature, nutrient availability). To address these variations, an experiment was conducted using a controlled photobioreactor system, maintaining high and low light, constant temperature, nutrient levels, and two pCO2 concentrations. This study focused on two regionally relevant …

Patterns Of Carbon And Nitrogen Accumulation In Seagrass (Posidonia Oceanica) Meadows Of The Eastern Mediterranean Sea, Eugenia T. Apostolaki, Paul S. Lavery, Victoria Litsi-Mizan, Eduard Serrano, Karina Inostroza, Vasilis Gerakaris, Thanos Dailianis, Julius Glampedakis, Tara Holitzki, Erik Johnson, Miguel A. Mateo, Oscar Serrano

Research outputs 2022 to 2026

The variability in stocks and accumulation rates of organic carbon (Corg), nitrogen (N), and carbonate (CaCO3) was studied in fifteen Posidonia oceanica meadows spread throughout the South Aegean Sea (Greece). In addition, the abiotic and biotic drivers determining the pattern of variability in the accumulation rates were assessed by exploring the influence of sediment characteristics, seagrass traits, and environmental settings. The meadows supported on average (±STDEV) 14.6 ± 5.0 kg Corg m−2, 0.47 ± 0.17 kg N m−2, and 249 ± 210 kg CaCO3 m−2 in the top meter of their sediments, with mean accumulation rates over the last 500 …

Predation Rates On Flatback Turtle Natator Depressus Eggs And Hatchlings At An Island Rookery, Casper Avenant, Sabrina Fossette, Scott Whiting, Glenn A. Hyndes

Research outputs 2022 to 2026

Predation can significantly threaten the vulnerable egg and hatchling stages of sea turtles, yet for most populations this remains poorly quantified for use in conservation. We provided the first quantified predation rates of flatback turtle eggs and hatchlings at Thevenard Island, a medium-sized rookery on the northwest coast of Australia, with a focus on ghost crabs as potential predators. Burrow densities were used as proxy for ghost crab densities, while start- and end-of-season nest inventories and infrared videography were used to quantify egg and hatchling predation, respectively. Inventories of 27 nests suggested a mean hatching success of 74.2 ± 4.6% …

Environmental Dna Identifies Coastal Plant Community Shift 1,000 Years Ago In Torrens Island, South Australia, Nicole R. Foster, Alice R. Jones, Oscar Serrano, Anna Lafratta, Paul S. Lavery, Kor-Jent Van Dijk, Ed Biffin, Bronwyn M. Gillanders, Jennifer Young, Pere Masque, Patricia S. Gadd, Geraldine E. Jacobsen, Atun Zawadzki, Andria Greene, Michelle Waycott

Research outputs 2022 to 2026

Anthropogenic activities are causing detrimental changes to coastal plants– namely seagrass, mangrove, and tidal marshes. Looking beyond recent times to past vegetation dynamics is critical to assess the response and resilience of an environment to change. Here, we develop a high-resolution multi-proxy approach, providing a new evidence base to decipher long-term change in coastal plant communities. Combining targeted environmental DNA analysis with chemical analysis of soils, we reconstructed 4,000 years of change at a temperate wetland on Torrens Island South Australia and identified an ecosystem shift that occurred ~ 1000 years ago. What was once a subtidal seagrass system shifted …

Red Snapper (Lutjanus Campechanus) Neurocranium, Michelle Bassali, Anthony D'Auria, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Assessment And Prioritization Of Contaminants Of Concern Along Florida's Coral Reef, Ellen Regina E. Skelton

All HCAS Student Capstones, Theses, and Dissertations

Florida’s Coral Reef (FCR) is the third largest barrier reef in the world and faces significant stress from localized land, water, and air-based sources of pollution. Numerous chemical contaminants have been found in waters surrounding reefs and within corals, including pesticides, hydrocarbons, personal care products, pharmaceuticals, and trace metals. However, for most current and emergent environmental contaminants, little to no consistent information exists regarding environmental concentrations or toxicological effects on corals. Assessment of the levels of contaminants in coral reef environments is needed to conduct risk assessments to guide management, restoration, and recovery strategies, and the coral reef resource management …

Largemouth Bass Neurocranium, Owen Duerbeck, Ian Thelwell, Oliva Weeks

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Black Grouper Neurocranium, Angelina Trapani-Banyra, Victoria Bruno, Mason Schleicher

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Snakehead Neurocranium, Alexis K. Crass, Megan E. Martiello, Matthew D. Gassmann, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Place-Based Conservation In Coastal And Marine Ecosystems: The Importance Of Engagement With Underrepresented Communities, Viniece Jennings, Kelly M. San Antonio, Mya J. Brown, Lalah Choice, Queriah Simpson, Imani Ford, Hyun Jung Cho, Pedro Solis, Ashley Lacey, De’Marcus Robinson

School of Earth, Environmental, & Marine Sciences Faculty Publications

Through the years, research has described the importance of community-based approaches in the management of coastal and marine ecosystems. Coastal and marine issues are multifaceted and require place-specific approaches developed in partnership with vulnerable communities who are impacted by environmental stressors. Place-based conservation, a management approach that focuses on unique, place-specific characteristics, and other similar methods. It considers the need to integrate human dimensions and location-centered approaches, which are often lacking in typical natural resource management. Meaningful engagement with underrepresented communities can holistically account for socioeconomic factors and cultural knowledge that inform best management practices. As the health of marine …

Black Grouper Neurocranium, Grace K. Triplett, Katelyn A. Mckimmy, Lacey Adamik, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Todaro Channeled Apple Snail (Pomacea Canaliculata), Jasmyn Todaro, Amy C. Hirons

Hirons Field Techniques

Channeled Apple Snail (Pomacea canaliculata) shell.

Results From A Multi-Laboratory Ocean Metaproteomic Intercomparison: Effects Of Lc-Ms Acquisition And Data Analysis Procedures, Mak A. Saito, Jaclyn K. Saunders, Matthew R. Mcilvin, Erin M. Bertrand, John A. Breier, Margaret Mars Brisbin

School of Earth, Environmental, & Marine Sciences Faculty Publications

Metaproteomics is an increasingly popular methodology that provides information regarding the metabolic functions of specific microbial taxa and has potential for contributing to ocean ecology and biogeochemical studies. A blinded multi-laboratory intercomparison was conducted to assess comparability and reproducibility of taxonomic and functional results and their sensitivity to methodological variables. Euphotic zone samples from the Bermuda Atlantic Time-series Study (BATS) in the North Atlantic Ocean collected by in situ pumps and the autonomous underwater vehicle (AUV) Clio were distributed with a paired metagenome, and one-dimensional (1D) liquid chromatographic data-dependent acquisition mass spectrometry analysis was stipulated. Analysis of mass spectra from …

Red Snapper Neurocranium, Roman Devlin, Michael A. Birnbaum, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Butterfly Peacock Bass (Cichla Ocellaris) Neurocranium, Jasmyn Todaro, Emma Horton, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

A Decade Of Monitoring Reveals A Dynamic Fish Assemblage On A Substantial Artificial Reef In The Texas Gulf Of Mexico, David Hicks, Ethan T. Getz, Richard Kline, Carlos E. Cintra-Buenrostro

School of Earth, Environmental, & Marine Sciences Faculty Publications

Fish communities on artificial reefs have rarely been monitored over long periods to evaluate success of reef deployment. Here, we used roving diver surveys to assess changes in fish assemblages on a large, reefed vessel during 2008–2017. Multivariate analyses revealed a dynamic community that stabilized after 5 years. Species richness increased and species dominance decreased during 2008–2017. The fish community shifted toward reef-associated species such as hogfish and pufferfish. Species composition shifted, but trophic structure was relatively stable, which suggested that functional groups may not reflect larger community shifts. Our results indicate that fish communities on artificial reefs are temporally …

Australians Support Multi-Pronged Action To Build Ecosystem Resilience In The Great Barrier Reef, Stewart Lockie, Henry Bartelet, Brent Ritchie, Csilla Demeter, Bruce Taylor, Lintje Sie

Quantitative Methods and Information Technology Faculty Publications

The scale and pace of global environmental change calls for a dramatic upscaling of ecosystem restoration and for actions that build the resilience of ecosystems to future environmental change. This research aimed to quantify public perceptions of threats to the health of the Great Barrier Reef (GBR), Australia, and their support for strategies to address those threats including large-scale restoration and resilience-building actions. We examine how these perceptions change over time and across social cohorts including people living closer to the Reef (n = 2621) and the general Australian population (n = 5825). Respondents were concerned about both …

3d Printed Microfluidic Fabrication Methodology, Characterization, Mechanical Design, And Applications In Electrostatic Artificial Muscles And Benthic Microbial Fuel Cells, Terak B. Hornik

Master's Theses

The fabrication of microfluidic devices often requires specialized methods. The development of these methods requires careful characterization and understanding of the processes involved. Using primarily PolyJet 3D printing technology, microfluidics offers a wide scope of applications such as microfluidic benthic microbial fuel cells (MBMFCs) and electrostatic artificial muscles. MBMFCs benefit from the confinement of the microbes resulting in close proximity between the electrode and the organisms. Using a modular design called the Sponge, assembly and upscaling is possible. Electrostatic artificial muscles benefit from a microfluidic approach due to the non-linearity of electrostatic attraction creating disproportionate benefits when miniaturized. When designed …

Seagrass Classification Using Unsupervised Curriculum Learning (Ucl), Nosheen Abid, Md Kislu Noman, György Kovács, Syed Mohammed Shamsul Islam, Tosin Adewumi, Paul Lavery, Faisal Shafait, Marcus Liwicki

Research outputs 2022 to 2026

Seagrass ecosystems are pivotal in marine environments, serving as crucial habitats for diverse marine species and contributing significantly to carbon sequestration. Accurate classification of seagrass species from underwater images is imperative for monitoring and preserving these ecosystems. This paper introduces Unsupervised Curriculum Learning (UCL) to seagrass classification using the DeepSeagrass dataset. UCL progressively learns from simpler to more complex examples, enhancing the model's ability to discern seagrass features in a curriculum-driven manner. Experiments employing state-of-the-art deep learning architectures, convolutional neural networks (CNNs), show that UCL achieved overall 90.12 % precision and 89 % recall, which significantly improves classification accuracy and …

In Hot Water: Uncertainties In Projecting Marine Heatwaves Impacts On Seagrass Meadows, Paula S. Hatum, Kathryn Mcmahon, Kerrie Mengersen, Jennifer K. Mcwhorter, Paul P.Y. Wu

Research outputs 2022 to 2026

Seagrass ecosystems, vital as primary producer habitats for maintaining high biodiversity and delivering numerous ecosystem services, face increasing threats from climate change, particularly marine heatwaves. This study introduces a pioneering methodology that integrates Dynamic Bayesian Networks of ecosystem resilience with climate projections, aiming to enhance our understanding of seagrass responses to extreme climate events. We developed cutting-edge metrics for measuring shoot density and biomass in terms of population and site extinction, presented as annual ratios relative to their respective baselines. These metrics include associated uncertainties and projected recovery times. This innovative approach was applied in a case study focusing on …

The Moon Jelly, Adam Krogmann

PANDION: The Osprey Journal of Research and Ideas

Artist Statement

The Moon Jelly is a piece I created as a part of the Scientific Illustration course I participated in during the summer semester of 2023. This piece was inspired by the livestreams of the Monterey Bay Aquarium that film these moon jellies (Aurelia aurita) in their tank. The Moon Jelly is an ink drawing created as part of a collection focused on Monterey Bay Aquarium animals. Through this artwork I hoped to draw attention to smaller marine animals that may otherwise be overlooked even though they provide a vital role in the ecosystem. Moon jellyfish are important marine …

Basic Psychological Needs Satisfaction And Well-Being Among Seafarers: An Investigation Of Interaction Effects Through The Lens Of Self-Determination Theory, Nong Vuong Phi, Kung Don Ye, Feng Ming Tsai, Hsiao Chao Hsieh, Shiou-Yu Chen

Journal of Marine Science and Technology–Taiwan

Enhancing employee well-being is a primary goal for enterprise sustainable development. Although seafarers represent a major human resource in the maritime industry, the distinctive demands of their profession often compel them to compromise on certain elements in fulfilling their basic psychological needs, thereby contributing to mental health challenges. Recently, COVID-19 and its associated border control measures have prolonged the voyages of seafarers, drawing public attention to the topic of seafarer well-being. In this study, self-determination theory was used to explore the effects of autonomy, competence, and relatedness as fundamental psychological needs on seafarer well-being. After the independent effects of these …

Applying Data-Limited Assessment Methods To Charter Logbook Length Data, Brett Crisafulli, Sybrand Alex Hesp, David Fairclough, Emily A. Fisher, Paul D. Lewis, Jeffrey V. Norriss, Corey B. Wakefield, Fabian Trinnie, Stephen J. Newman

Fisheries Research Reports

Marine waters along the Western Australian coastline are characterised by low ecosystem productivity and high species diversity of fishes. With over 3,000 known species comprising estuarine, nearshore, demersal and pelagic fishes in the region, many contribute to important commercial and recreational fisheries (Lenanton et al. 1991; Molony et al. 2011; Newman et al. 2018). As it is logistically and economically infeasible to conduct intensive monitoring and high-level stock assessments of all exploited fish species in Western Australia, indicator species are used to assess the sustainability of suites of species of biological and ecological similarity, for optimal use of available resources …

Spatial And Environmental Drivers Of Temperate Estuarine Archaeal Communities, Emily Cocksedge, Michael Stat, Alessandra L. Suzzi, Troy F. Gaston, Megan J. Huggett

Research outputs 2022 to 2026

Archaea play a crucial role in the global biogeochemical cycling of elements and nutrients, helping to maintain the functional stability of estuarine systems. This study characterised the abundance and diversity of archaeal communities and identified the environmental conditions shaping these microbial communities within six temperate estuaries along approximately 500 km of the New South Wales coastline, Australia. Estuarine sediments were found to exhibit significantly higher species richness than planktonic communities, with representative sequences from the Crenarchaeota phylum characterising each environment. Ordinate analyses revealed catchment characteristics as the strongest drivers of community variability. Our results also provide evidence supporting distance-decay patterns …

Stable Isotope Analysis Of Antipatharian Diets From The Northwestern Gulf Of Mexico, Keir J. Macartney, Victoria Salinas, Zachary Rivera, David Hicks

School of Earth, Environmental, & Marine Sciences Faculty Publications

Antipatharians, or black corals, form a key component of the benthic fauna found throughout the Gulf of Mexico (GOM). In the northwestern GOM, they are a common member of the communities found on the natural relic coral—algal banks known as the South Texas Banks as well as on artificial reefs. They are known to provide important habitat for many ecologically and economically important species in the area but are relatively understudied. Here we present a study on their trophic ecology using stable isotope analysis of carbon and nitrogen from 2 species, Antipathes atlantica and Stichopathes luetkeni from a mesophotic artificial …