Marine Biology Commons^™

Phylogenetic Relationships Of Crown Conchs (Melongena Spp.): The Corona Complex Simplified, Kenneth Hayes, Stephen Karl

Department of Biology Faculty Publications

The larval stages of marine taxa are often assumed to have an overriding influence on the phylogeographical structure of a species as well as on rates of speciation. Phylogeographical disjunctions in high-dispersal marine taxa are generally attributed to historical events or contemporary ecological factors. The lack of genetic structure in low-dispersal marine taxa is often ascribed to rafting by juveniles, yet few studies discuss the effects of historical conditions. Around peninsular Florida, there are three species of the crown conch, Melongena, which have direct-developing, crawl-away larvae. One of these species, M. corona, is subdivided into three subspecies. We refer to …

Mapping Coral Reef Habitats In Southeast Florida Using A Combined Technique Approach, Brian K. Walker, Bernhard Riegl, Richard E. Dodge

Marine & Environmental Sciences Faculty Articles

To create maps of nearshore benthic habitats of Broward County, Florida, from 0 to 35 m depth, we combined laser bathymetry, acoustic ground discrimination, subbottom profiling, and aerial photography data in a geographic information system (GIS). A mosaic of interpolated, sun-shaded, laser bathymetry data served as the foundation upon which acoustic ground discrimination, limited subbottom profiling and aerial photography, and groundtruthing data aided in interpretation of habitats. Mapping criteria similar to NOAA biogeographic Caribbean mapping were used to allow for a comparable output. Expert-driven visual interpretation outlined geomorphological features at a scale of 1 : 6000 with a minimum mapping …

Danville Town Forest Stewardship Plan, Ellen Snyder

PREP Reports & Publications

As a community resource the Town Forest offers many benefits and values to residents and visitors. The Forest provides wildlife habitat, scenic beauty, clean air, cool temperatures, hiking trails and other outdoor recreation, wood products, water supply protection, flood storage, historical artifacts, among others. People value the Town Forest for many different reasons. Fortunately, most of these are complementary benefits, each available without compromising the integrity of the others. A goal of this Stewardship Plan is to understand and appreciate the values of the Town Forest and to guide the use and management of these resources over time. This is …

Estimating Geocenter Variations From A Combination Of Grace And Ocean Model Output, Sean Swenson, D. Chambers, John Wahr

Marine Science Faculty Publications

In this study, we estimate a time series of geocenter anomalies from a combination of data from the Gravity Recovery and Climate Experiment (GRACE) satellite mission and the output from ocean models. A matrix equation is derived relating total geocenter variations to the GRACE coefficients of degrees two and higher and to the oceanic component of the degree one coefficients. We estimate the oceanic component from t wo state-of-the-art ocean models. Results are compared to independent estimates of geocenter derived from other satellite data, such as satellite laser ranging and GPS. Finally, we compute degree one coefficients that are consistent …

Assimilation Of High-Frequency Radar Currents In A Nested Model Of The West Florida Shelf, Alexander Barth, Aida Alvera-Azcarate, Robert H. Weisberg

Marine Science Faculty Publications

High‐frequency radar currents are assimilated in a West Florida Shelf (WFS) model based on the Regional Ocean Model System (ROMS), which is nested in the Atlantic Hybrid Coordinate Ocean Model (HYCOM) for the purpose of including both local and deep‐ocean forcing, particularly the Gulf of Mexico Loop Current. Tides are not included in this model. An ensemble simulation of the WFS model is carried out under different wind‐forcings in order to estimate the error covariance of the model state vector and the covariance between ocean currents and winds. Radial currents measured by high‐frequency radar antennas near Saint Petersburg and Venice, …

Spiny Lobsters Detect Conspecific Blood-Borne Alarm Cues Exclusively Through Olfactory Sensilla, Shkelzen Shabani, Michiya Kamio, Charles D. Derby

Peer Reviewed Articles

When attacked by predators, diverse animals actively or passively release molecules that evoke alarm and related anti-predatory behavior by nearby conspecifics. The actively released molecules are alarm pheromones, whereas the passively released molecules are alarm cues. For example, many insects have alarm-signaling systems that involve active release of alarm pheromones from specialized glands and detection of these signals using specific sensors. Many crustaceans passively release alarm cues, but the nature of the cues,sensors and responses is poorly characterized. Here we show in laboratory and field experiments that injured Caribbean spiny lobsters, Panulirus argus, passively release alarm cues via blood …

Hampton Falls' Prime Wetlands Designation, West Environmental Inc.

PREP Reports & Publications

West Environmental Inc staff (WEI) worked with Hampton Falls Conservation Commission to prepare a zoning amendment to designate 10 Prime Wetlands in the town, totally 1,270.8 acres. The amendment was approved by the citizens of Hampton Falls at the March 2008 town vote and WEI compiled and submitted the Prime Wetlands Designation application to the New Hampshire Department of Environmental Services on August 4, 2008.

Review Of The Genus Polycheria Haswell, A Symbiotic Group Of Amphipods (Crustacea: Dexaminidae) With Descriptions Of New Species From Florida, The Caribbean Sea, And The Indo-Pacific Region, John Milton Foster

Dissertations

Systematics and taxonomy of the dexaminid amphipod genus Polycheria Haswell (Dexamindae: Amphipoda), whose members are cosmopolitan associates of tunicates and sponges, are confused. This is due in large part to the many inadequate and incomplete descriptions and poorly some executed illustrations, especially for the early studies on the group. Previously, 22 nominal species or forms have been described or designated in the literature. The purpose of this study is to critically review and clarify the systematics of this enigmatic genus. Based on personal collections and on specimens from museums, five new species are designated and 22 species or forms are …

Summer 2008, Nsu Oceanographic Center

Currents

No abstract provided.

Deep-Pelagic Fishes And The Mid-Atlantic Ridge: Interactions And Vectoring Of Gelatinous Carbon To Higher Trophic Levels?, Tracey Sutton, F. M. Porteiro, C. I. H. Anderson, J. Horne

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The assemblage structure and vertical distribution of deep-pelagic fishes relative to a mid-ocean ridge system is described from an acoustic and discrete-depth trawling survey conducted as part of the international Census of Marine Life field project MAR-ECO. A survey along the Mid-Atlantic Ridge (MAR), covering the full depth range (0 to >3000 m) with a combination of gear types, was conducted to understand the role of the pelagic fauna in ecosystem dynamics. A total of 205 fish species were collected by midwater sampling. Depth was by far the primary assemblage composition determinant, with ridge section secondary. The dominant ichthyofaunal component …

Community Land Conservation In The Coastal Watershed, Brian Hart

PREP Reports & Publications

The New Hampshire Estuaries Project (NHEP) provided a $10,000 grant to the Southeast Land Trust of New Hampshire (SELTNH) to support the hiring of a Community Land Protection Specialist to expand the region’s capacity to implement and complete conservation efforts within the coastal watershed, and specifically within the Lamprey River and Exeter River corridors. Over a period of eighteen months (January 2007 through June 30, 2008), the Community Land Protection Specialist (Specialist) worked with the Town of Brentwood, the Lamprey River Advisory Committee, and other community partners to conserve critical lands along the Exeter River, Lamprey River, and other areas …

A Comparison Of Scleractinian Coral Abundance Between Natural And Artificial Substrata In A High-Latitude Environment Off Broward County, Florida, Usa, Deron James Bauer

HCNSO Student Theses and Dissertations

The Dania Beach Erojacks Artificial Reef was deployed off the coast of Broward County, Florida on December 31, 1967 as a way to help combat beach erosion. Over the last forty years, the linear pile of concrete hexapods has become an important habitat, for scleractinian corals, octocorals, algae, crustaceans, mollusks, and fish. This study focuses on the density and size of the scleractinian corals found on this artificial reef and how it compares to that of the nearby natural reef. In addition, the impact of two hurricanes on the shallow portion of the artificial reef was documented. In the 2-year …

Unh Monitoring Activities That Support The National Coastal Assessment In 2007, Philip Trowbridge

PREP Reports & Publications

The National Coastal Assessment is an Environmental Protection Agency program to monitor the health of the nation’s estuaries using nationally standardized methods and a probabilistic sampling design. Dedicated EPA funding for the National Coastal Assessment ceased after 2006. Therefore, the NH Department of Environmental Services and the New Hampshire Estuaries Project contributed funds to continue a portion of the National Coastal Assessment in 2007. Water quality measurements were successfully made during 2007 at 25 randomly located stations throughout the Great Bay Estuary and Hampton-Seabrook Harbor. These data will be combined with samples collected in 2006 for probabilistic assessments of estuarine …

A Model Framework For Predicting Reef Fish Distributions Across The Seascape Using Gis Topographic Metrics And Benthic Habitat Associations, Brian K. Walker

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Increased topographic complexity has been linked to increased species diversity and/or abundance in many ecological communities, including coral reefs. Several topographic metrics can be measured remotely in GIS using high resolution bathymetry, including elevation, surface rugosity, and seafloor volume within specified areas. Statistical relationships between these data and organismal distributions within mapped habitats can be used to make predictions across the entire bathymetric dataset. In this study a model framework is presented which utilizes statistically significant relationships between reef fish abundance and species richness and GIS topographic complexity measurements for samples within similar benthic habitats to create GIS-based prediction maps …

Genetic Connectivity In The Branching Vase Sponge (Callyspongia Vaginalis) Across The Florida Reef Tract And Caribbean, Melissa B. Debiasse, Vincent P. Richards, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The Porifera constitute a substantial fraction of the biomass on coral reefs and frequently have higher species diversity than corals and algae, making this phylum an important model for the investigation of reef connectivity. We examined genetic connectivity in the common branching vase sponge, Callyspongia vaginalis, by analyzing DNA sequence variation in 511 bp of the mitochondrial cytochrome oxidase I (COI) gene in 401 individuals sampled from 16 locations throughout the Florida reef tract and Caribbean. Populations of Callyspongia vaginalis were highly genetically structured over the study area (ΦST = 0.48, P < 0.0001), including over distances as short as tens of kilometers within the Florida reef tract, and had a significant overall pattern of isolation by distance (P = 0.0002). However, nonsignificant pairwise ΦST values were also found between a few Florida sampling sites suggesting that long distance dispersal, perhaps by means of fragmentation, may occur over continuous, shallow coastlines. Indeed, sufficient gene flow appears to occur along the Florida reef tract to obscure a signal of isolation by distance (P = 0.164), but not to homogenize haplotype frequencies over 465 km from Palm Beach to the Dry Tortugas. Statistical parsimony analysis revealed two highly divergent haplotypes from Honduras suggestive of cryptic speciation. Inferences from a nested clade analysis supported the pattern of restricted gene flow and isolation by distance in the Caribbean, and suggested a northward range extension of C. vaginalis from a hypothesized Central American …

Contrasting Patterns Of Population Structure And Dispersal For The Giant Barrel Sponge (Xestospongia Muta) Within The Florida Reef Tract And Caribbean, Vincent P. Richards, Kevin A. Feldheim, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Sponges are one of the dominant fauna on Florida and Caribbean reefs, with species diversity often exceeding that of scleractinian corals. Despite their importance as structural components and habitat providers on reefs, their dispersal dynamics are little understood. We utilized eight microsatellite markers to study the population structure and migration patterns of the giant barrel sponge (Xestospongia muta), a widespread species throughout Florida and the Caribbean. Bayesian multilocus genotype analyses clustered 157 samples from the Bahamas, Honduras, and the US Virgin Islands into three distinct groups. 159 samples from nine locations within 284 km of the Florida reef …

Coral Ultrastructural Response To Elevated Pco2 And Nutrients During Tissue Repair And Regeneration, Dorothy-Ellen A. Renegar, Patricia Blackwelder, Alison L. Moulding

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Corals and coral reefs have recently experienced widespread decline attributed to anthropogenic pressure on reef systems. Studies have demonstrated that nutrient and pCO₂ stress effect coral growth and calcification, but study of specific effects on coral tissue is lacking. The objective of this research was to examine wound healing in corals and how it is affected by exposure to elevated nutrients and pCO₂. Coral tissue repair and regeneration during wound healing in Montastraea cavernosa and Porites astreoides were assessed histologically and ultrastructurally by examining colony fragments exposed to elevated nitrate, phosphate, and pCO₂. In M. …

Stony Coral Species Diversity And Cover In The Florida Keys Using Design-Based Sampling, Leanne M. Rutten, Mark Chiappone, Dione W. Swanson, Steven Miller

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Large-scale sampling of stony coral species richness, species distribution, and cover was undertaken at 423 Florida Keys sites between Miami and SW of Key West during 2005 and 2007. A two-stage, stratified random sampling design employed belt transects to enumerate numbers of species and point-intercept surveys to quantify cover. The sampling design incorporated ten reef and hard-bottom habitats from < 1 m to 27 m depth, as well as oceanographic regions and areas inside and outside of protected management zones. These data provide insights into the spatial extent and factors influencing stony coral biodiversity. For stony corals, a pool of ~50 taxa encompassing the Orders Milleporina and Scleractinia, including species and morphotypes, was recorded. Significant differences were found in species richness and cover among cross-shelf habitats, with great values on inner shelf margin patch reefs, followed by deeper fore-reef slope habitats that extended to the 27 m depth limit sampled. In contrast, the shallow fore-reef, especially in areas historically dominated by the branching coral Acropora palmata, yielded relatively low numbers of species and cover that are presently dominated by smaller, brooding corals such as Porites astreoides and Favia fragum.

Population Structure In The Brown Tube Sponge (Agelas Conifera) In The Florida Reef Tract And Caribbean, Jennifer M. Hester, Vincent P. Richards, Kevin Feldheim, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Sponges are broadly distributed, occur in a wide range of habitats, and comprise a substantial amount of the biomass and macro-biodiversity on coral reefs. Despite their ubiquity in reef ecosystems, their dispersal dynamics are largely unknown. Here we report on gene flow and population structure for the common brown tube sponge, Agelas conifera (Demospongiae, Poecilosclerida) in the Florida reef tract and Caribbean. Over 300 samples collected from ten geographically distinct locations throughout Florida and the Caribbean are being analyzed for variation at eight microsatellite loci. Preliminary results from screening four loci in 295 individuals from eight locations indicated significant population …

Evaluation Of Nhep Outreach: A Survey Of Planning Boards And Conservation Commissions, Dave Kellam

PREP Reports & Publications

This report presents the findings of a survey conducted by the University of New Hampshire Survey Center of planning board and conservation commissions in the 42 coastal watershed communities of New Hampshire from November 2007 to February 2008. Background information about a similar survey conducted in 2005 and a summary of New Hampshire Estuaries Project (NHEP) outreach activity from August 2005 to February 2008 is also provided to assist in the interpretation of the survey. Conclusions by NHEP staff are offered at the end of the report.

Fisheries Research Report No. 171 - Evaluation Of Exclusion Grids To Reduce The Bycatch Of Dolphins, Turtles, Sharks And Rays In The Pilbara Trawl Fishery, Peter Stephenson, S. Wells, J. A. King

Fisheries Research Reports

DBIF funded Project.

Considerable research on the documention of the bycatch of cetaceans, seals, turtles, and sea lions during trawl fishing operations has been undertaken worldwide. These include the Argentinean squid and hake trawl fisheries (Crespo et al., 1997; Fertl & Leatherwood, 1997), the Dutch pelagic trawl fishery (Couperus, 1997), the NE Atlantic pelagic trawl fishery (Tregenza & Collet, 1998) and the New Zealand squid fishery (Fishing News International, 2005).

In the Pilbara Fish Trawl Fishery, operating off the coast of Western Australia protected species including dolphins, turtles, sawfish, sea snakes as well as numerous sharks and ray species have …

Population Status Of Acropora Corals In The Florida Keys, Steven Miller, Mark Chiappone, Leanne M. Rutten, Dione W. Swanson

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Population declines of staghorn coral (Acropora cervicornis) and elkhorn coral (A. palmata) are often-cited examples of Caribbean reef change since the 1970s, due, in part, to disease and localized effects from storms and predation. Both corals were listed as threatened on the U.S. Endangered Species List based upon range-wide decline and poor recovery. A spatially intensive survey undertaken in the Florida Keys of Acropora corals quantified habitat distribution, colony abundance, size, and condition at 235 sites spanning over 200 km in 2007. A two-stage stratified sampling design using belt transects incorporated cross-shelf habitats and no-fishing management …

Population Genetic Structure Of A Coral Reef Ecosystem Apex Predator, The Gray Reef Shark (Carcharhinus Amblyrhynchos), Rebekah L. Horn, William Robbins, Douglas Mccauley, Philip Lobel, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Sharks play a major functional role as apex predators in coral reef ecosystems, raising concerns that their ongoing overexploitation will compromise the integrity and sustainability of reefs. The gray reef shark (Carcharhinus amblyrhynchos) is a strongly coral reef associated species whose populations are known to have declined substantially in some regions. There is no information on population structure in this species to aid in their management and conservation. We are assessing genetic structure in this species by using entire mitochondrial control region sequences and 15 nuclear microsatellite loci as markers. 93 gray reef shark samples were obtained from …

Ultrastructural And Histological Analysis Of Dark Spot Syndrome In Siderastrea Siderea And Agaricia Agaricites, Dorothy-Ellen A. Renegar, Patricia Blackwelder, J. D. Miller, D. J. Gochfeld, Alison L. Moulding

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Dark Spot Syndrome (DSS) typically manifests in scleractinian corals as lesions of varying color, size, shape and location that can result in skeletal changes and tissue death. A causative agent for DSS has not yet been identified. The objective of this study was histological and ultrastructural comparison of the cellular and skeletal characteristics of DSS-affected and healthy Siderastrea siderea and Agaricia agaricites. The greater resolution possible with transmission electron microscopy (TEM) revealed microbial activity and tissue changes not resolvable utilizing histology. DSS-affected tissue had less integrity, with increasing cellular degradation and vacuolization. A high concentration of electron dense inclusions, …

Recovery Of Injured Giant Barrel Sponges, Xestospongia Muta, Offshore Southeast Florida, David S. Gilliam, Brian K. Walker, S. J. Saelens, Daniel P. Fahy, Vladimir N. Kosmynin

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Giant barrel sponges, Xestospongia muta, are abundant and important components of the southeast Florida reef system, and are frequently injured from anthropogenic and natural disturbances. There is limited information on the capacity of X. muta to recover from injury and on methods to reattach X. muta fragments. In late 2002, hundreds of barrel sponges offshore southeast Florida (Broward County) were accidentally injured during an authorized dredging operation. In early 2003, two to three months post-injury, 93% of 656 assessed injured sponges appeared to be recovering. In 2006, three years post-injury, nearly 90% of 114 monitored sponges continued to show …

Incidence And Timing Of Low Dissolved Oxygen Events In The Squamscott River: 2005-07, Stephen H. Jones

PREP Reports & Publications

The Squamscott River has had extended episodes of low dissolved oxygen (DO) that have been recorded at a site near its mouth during the past few years. These episodes were recorded as a result of temporally intensive monitoring by a datasonde deployed through most of each year. Whereas low DO events can occur during April-November, events during the colder months are typically less frequent and are often caused by unusual natural or severe weather conditions. Low DO events occur most frequently during July-September when elevated levels of nutrients are most likely to contribute to their cause, and are thus of …

A Tale Of Germs, Storms, And Bombs: Geomorphology And Coral Assemblage Structure At Vieques (Puerto Rico) Compared To St. Croix (U.S. Virgin Islands), Bernhard Riegl, Ryan P. Moyer, Brian K. Walker, Kevin E. Kohler, David S. Gilliam, Richard E. Dodge

Marine & Environmental Sciences Faculty Articles

The former U.S. Navy range at Vieques Island (Puerto Rico, United States) is now the largest national wildlife refuge in the Caribbean. We investigated the geomorphology and benthic assemblage structure to understand the status of the coral reefs. Coral assemblages were quantified at 24 sites at Vieques and at 6 sites at St. Croix, U.S. Virgin Islands. These sites were chosen to represent the major zones of reef geomorphology. Sites consisted of two or three 21-m-long photo-quadrate belt transects. The results revealed surprisingly little differentiation in the coral assemblages within and between reefs of comparable geomorphological and oceanographic setting at …

Scleractinian Coral Recruitment To Reefs Physically Damaged By Ship Groundings, E. T. Rubin, Alison L. Moulding, Jose V. Lopez, David S. Gilliam, V. N. Kosmynin, Richard E. Dodge

Marine & Environmental Sciences Faculty Articles

The southeast Florida reef system faces a number of stress factors, among which ship groundings are one of the most physically damaging. Portions of the Florida reef tract located near Port Everglades, Broward County, Florida, USA have been damaged by ship groundings. In 2004, physical damage of more than 30,000 m² was caused by the groundings of two large cargo ships, the MV Eastwind and MV Federal Pescadores. The present study was designed to measure differences of scleractinian coral recruitment patterns (recruit diversity and richness) and rates to these injured sites in comparison to undamaged reef sites. Coral …

Comparison Of Bacterial Diversity Within The Coral Reef Sponge, Axinella Corrugata, And The Encrusting Coral Erythropodium Caribaeorum, Jose V. Lopez, L. K. Ranzer, A. Ledger, B. Schoch, A. Duckworth, P. J. Mccarthy, R. G. Kerr

Marine & Environmental Sciences Faculty Articles

We compared the Caribbean reef sponge, Axinella corrugata, with the Caribbean reef coral, Erythropodium caribaeorum for differences in their resident microbial communities. This cursory survey of bacterial diversity applied 16S rRNA gene sequences. Over 100 culture-independent sequences were generated from five different Axinella 16S rRNA libraries, and compared with 69 cultured isolates. The cultureindependent 16S rDNA clones displayed a higher diversity of Proteobacteria, including “uncultured” or “unknown” representatives from the Deltaproteobacteria. Arcobacterium, and Cyanobacteria were also found. We have also confirmed that Axinella sponges appeared to host specific microbial symbionts, similar to the previously identified clones termed “OSO” …

11th International Coral Reef Symposium Proceedings, Bernhard Riegl (Editor), Richard E. Dodge (Editor)

ICRS Conference Proceedings

A defining theme of the 11^th International Coral Reef Symposium was that the news for coral reef ecosystems are far from encouraging. Climate change happens now much faster than in an ice-age transition, and coral reefs continue to suffer fever-high temperatures as well as sour ocean conditions. Corals may be falling behind, and there appears to be no special silver bullet remedy. Nevertheless, there are hopeful signs that we should not despair.

Reef ecosystems respond vigorously to protective measures and alleviation of stress. For concerned scientists, managers, conservationists, stakeholders, students, and citizens, there is a great role to play …