Marine Biology Commons^™

Stakeholder Input And Meeting Summary Report, D. B. Truslow Associates

PREP Reports & Publications

The Piscataqua Region Estuaries Partnership (PREP) is part of the U.S. Environmental Protection Agency’s (EPA) National Estuary Program, which is a joint local/state/federal program established under the Clean Water Act. PREP’s goal is to protect and restore the Great Bay Estuary watershed and Hampton-Seabrook Estuary watershed. The organization receives its funding from the EPA and is administered by the University of New Hampshire. PREP will complete its update of the Comprehensive Conservation and Management Plan (CCMP) in early 2010. The first CCMP was released in 2000 when the organization was the New Hampshire Estuaries Project (NHEP). The NHEP management committee …

An Analysis Of Policies And Conservation Techniques To Reduce The Accidental Deaths Of Sea Turtle Hatchlings Due To Light Pollution In Broward County, Fl., Megan Wilson

HCNSO Student Theses and Dissertations

Light pollution is any excessive or obtrusive man made light source which disrupts the natural environment. Hatchling marine turtles are adversely affected by light pollution and therefore unlit nesting beaches are essential habitats for all marine turtle species. In Broward County, the most significant conservation issue facing nesting and hatchling marine turtles is the amount of light pollution present on urban sea turtle nesting beaches. The reduction of hatchling mortality from light pollution is an ongoing conservation goal of the State of Florida, Broward County, and the Broward County Sea Turtle Conservation Project (BCSTCP). Conservation techniques and policies intended to …

Year 14 Work Plan, Jennifer Hunter

PREP Reports & Publications

The Piscataqua Region Estuaries Partnership (PREP), formerly called the New Hampshire Estuaries Project, is part of the U.S. Environmental Protection Agency’s (EPA’s) National Estuary Program which is a joint local/state/federal program established under the Clean Water Act with the goal of protecting and enhancing nationally significant estuaries. PREP is housed at and administered through the University of New Hampshire. A 27-person Management Committee oversees the work of the program. The Management Committee has a diverse membership representing municipalities, planning commissions, state and federal natural resource management agencies, watershed groups, non-profit conservation organizations, energy producers, researchers, and fishermen. The Piscataqua Region …

Evaluation Of Groundwater Storage Monitoring With The Grace Satellite: Case Study High Plains Aquifer, Central United States, Gil Strassberg, Bridget Scanlon, D. Chambers

Marine Science Faculty Publications

Water scarcity is a critical issue in semiarid regions; however, regional groundwater monitoring is extremely limited. This study evaluates the ability of the GRACE satellites to monitor groundwater storage in the semiarid High Plains aquifer, United States (450,000 km² area), which is subjected to intense irrigation. GRACE-derived terrestrial water storage (TWS) is highly correlated with the sum of soil moisture (SM) and groundwater storage (GWS) (R = 0.96 for in situ measured SM from 78 stations and R = 0.95 for simulated SM with the Noah land surface model with root-mean-square difference of 38 mm and 36 mm, …

The Effects Of Climate Variability On The Structure Of The Phytoplankton Community In Tumaco Bay, Colombia, Ingrid Garcia-Hansen Honkala

Dissertations

Spatiotemporal variability in the diatom and dinoflagellate community structure and chlorophyll a (chl a) concentrations in Tumaco Bay during the 1993-2005 period was related clearly to seasonal and interannual variability in environmental conditions due to the migration of the Inter-tropical Convergence Zone (ITZC) and the influence of El Nino Southern Oscillation (ENSO) events. A total of 134 species of diatoms that belong to 57 genera, and 78 species of dinoflagellates that belong to 25 genera were identified during the survey. The diatom community was the dominant group in the waters of the bay, being the most abundant with the greatest …

Oceanic-Atmospheric Modes Of Variability And Their Effect On River Flow And Blue Crab (Callinectes Sapidus) Abundance In The Northcentral Gulf Of Mexico, Guillermo Humberto Sanchez-Rubio

Dissertations

Oceanic-atmospheric modes of variability occur on interdecadal, multidecadal, decadal, and interannual timescales and their influence on climate around the world has been confirmed. The present study investigates Mississippi River and Pascagoula River flows in response to the influence of one or more of the four oceanic-atmospheric modes of variability: the Pacific Decadal Oscillation (PDO), the Atlantic Multidecadal Oscillation (AMO), the North Atlantic Oscillation (NAO), and the El Nino Southern Oscillation (ENSO). These modes of variability are present in phases: PDO warm (PDOw) and cold (PDOc), AMO warm (AMOw) and cold (AMOc), NAO positive (NAOp) and negative (NAOn), and ENSO warm …

Pulsed Jet Dynamics Of Squid Hatchlings At Intermediate Reynolds Numbers, Ian K. Bartol, Paul S. Krueger, William J. Stewart, Joseph T. Thompson

Biological Sciences Faculty Publications

Squid paralarvae (hatchlings) rely predominantly on a pulsed jet for locomotion, distinguishing them from the majority of aquatic locomotors at low/intermediate Reynolds numbers (Re), which employ oscillatory/undulatory modes of propulsion. Although squid paralarvae may delineate the lower size limit of biological jet propulsion, surprisingly little is known about the hydrodynamics and propulsive efficiency of paralarval jetting within the intermediate Re realm. To better understand paralarval jet dynamics, we used digital particle image velocimetry (DPIV) and high-speed video to measure bulk vortex properties ( e. g. circulation, impulse, kinetic energy) and other jet features [ e. g. average and …

New Hampshire Estuaries Probabilistic Monitoring Program In 2008, Phil Trowbridge

PREP Reports & Publications

The New Hampshire Department of Environmental Services (NHDES), the U.S. Environmental Protection Agency (EPA) and the University of New Hampshire (UNH) partnered in 2008 to implement the National Coastal Assessment in NH’s estuarine waters. USEPA provided the study design and field protocols. UNH collected the samples and field data at the designated sites in the estuary. Funding for this sampling effort was provided by the Piscataqua Region Estuaries Partnership, NHDES, and the New Hampshire Coastal Program. The purpose of this memo is to document the quality assurance checks that were performed by NHDES. The data were not collected as part …

Accuracy Assessment And Monitoring For Noaa Florida Keys Mapping Aa Roi-1 (Hawk Channel Near American Shoal), Brian K. Walker, Greg Foster

Marine & Environmental Sciences Faculty Reports

This report describes the methodologies, analyses, and results for an independent accuracy assessment of a thematic benthic habitat map produced by NOAA for the Florida Keys. It is an analysis of four regional accuracy assessments. Over the course of the Florida Keys mapping project, NOAA amended part of the classification scheme. The original scheme for mapping benthic cover was a tiered approach where certain benthic cover categories were given priority over others (e.g. coral was most important). Recently, this was modified to a dominant benthic cover scheme where the habitat is characterized by the single most dominant cover type and …

Eelgrass Distribution In The Great Bay Estuary For 2008, Frederick T. Short

PREP Reports & Publications

Eelgrass in the Great Bay Estuary in 2008 was found only in the Great Bay itself and Portsmouth Harbor. In 2008 there was a continued loss of eelgrass biomass in the Estuary. Virtually all the eelgrass in Little Bay and the Piscataqua River has died. Eelgrass in Great Bay itself experienced an increase in distribution from 2007 to 2008, primarily from the re-seeding of bare areas that had been de-vegetated by nuisance algae in previous years. However, Great Bay showed a decrease in eelgrass biomass in 2008. Portsmouth and Little Harbors experienced a slight decrease in both distribution and cover …

Markov Models For Linking Environments And Facies In Space And Time (Recent Arabian Gulf, Miocene Paratethys), Bernhard Riegl, Samuel J. Purkis

Marine & Environmental Sciences Faculty Books and Book Chapters

This special publication Perspectives in Carbonate Geology is a collection of papers most of which were presented at a symposium to honor the 80th birthday of Bob Ginsburg at the meeting of Geological Society of America in Salt Lake City in 2005. The majority of the papers in this publication are connected with the study of modern carbonate sediments. Bob Ginsburg pioneered the concept of comparative sedimentology - that is using the modern to compare to and relate to and understand the ancient. These studies are concerned with Bob's areas of passion: coral reefs and sea-level; submarine cementation and formation …

Fisheries Occasional Publication No. 67 - Review Of Fisheries Research Report (177), Aldo Steffe, Department Of Fisheries Western Australia

Fisheries Occasional Publications

To provide a review of the Research Report (177) on recreational boat-based fishing in the West Coast Bioregion during 2005/06 including: • The appropriateness of the basic creel survey design used for deriving estimates of catch, effort and catch rates for this type of fishery. • An assessment of whether the assumptions, scope and omissions were suitably identified. • The robustness of the catch estimates, and any conclusions that were included in the report, and total and seasonal recreational catch estimates. These initial terms of reference were expanded to include some discussion on issues raised by (a) the WA Fisheries …

Spring 2009, Nsu Oceanographic Center

Currents

No abstract provided.

Fisheries Occasional Publication No. 66 - Scientific Review Of The West Coast Demersal Scalefish Fishery, Western Australia, Michael O'Neill, Department Of Fisheries Western Australia

Fisheries Occasional Publications

In December 2008 the Hon Norman Moore MLC, Minister for Fisheries Western Australia appointed two independent experts to assess separately 1) the validity of scientific advice to management and 2) options to manage recreational fishing of west coast demersal scalefish. The following review (1) assesses the validity of research outlining the status of baldchin groper (Choerodon rubescens), West Australian dhufish (Glaucosoma hebraicum) and snapper (Pagrus auratus) as described in the terms of reference. In addition to the terms of reference, an opinion was requested regarding the current appropriateness of the research advice (Wise et al 2007) and the resulting management …

A Bio-Optical Model For Syringodium Filiforme Canopies, Margaret A. Stoughton

OES Theses and Dissertations

Seagrasses are significant ecological and biogeochemical agents in shallow water ecosystems throughout the world. In many regions, seagrass meadows occupy a sufficient fraction of the coastal zone, and generate optical signatures that can be observed from space. Bio-optical models of light absorption and scattering by submerged plant canopies for certain species such as Thalassia testudinum and Zostera marina have successfully modeled the plane irradiance distribution and photosynthesis within the submerged canopies. Syringodium filiforme differs &om T. testudinttm and Z marina, in leaf morphology and canopy architecture. The objective of this study was to develop a radiative transfer model that …

Differential Response Of Amp Activated Protein Kinase (Ampk) And Hsp70 To Temperature Stress In The Gastropod, Nucella Lapillus, Emily Zimmermann

All Theses And Dissertations

Populations of the gastropod Nucella lapillus are polymorphic for shell color, with light-colored shells predominating on warmer, wave-protected shores and dark-colored shells limited primarily to cooler, wave-exposed shores. During thermal stress, darker shells attain higher body temperatures than lighter shells. These results suggest that heat stress may determine field distribution patterns. However, there is currently little evidence of physiological consequences of thermal stress in these organisms. Following the guiding hypothesis that heat stress leads to cellular energy depletion, we explored whether the central energy regulator AMP-activated Protein Kinase (AMPK) is activated by heat stress. We compared this response in both …

2008 Great Bay Organic Nitrogen (Pon & Don) And Light Extinction (Par) Monitoring Program, Jonathan Pennock

PREP Reports & Publications

This project takes advantage of these existing monitoring activities to collect and analyze for particulate organic nitrogen (PON), dissolved organic nitrogen (DON) and photosynthetically active radiation (PAR) at existing sample sites in the New Hampshire seacoast region. When combined with existing dissolved inorganic nitrogen measurements, PON and DON allow the entire Total Nitrogen (TN) pool to be quantified. PAR measurements provide an estimate of the light availability in the system.

2008 Great Bay Water Quality (Datasonde) Monitoring Program, Jonathan Pennock

PREP Reports & Publications

In situ water quality assessment has become an important source of data for monitoring, research and management activities in estuaries nationwide. As part of the National Estuarine Research Reserve System, the Great Bay System-Wide Monitoring Program (SWMP) produces in situ water quality data for four sites in and around Great Bay. This project extends the SWMP program to include year-round in situ data for a station at the University of New Hampshire Coastal Marine Lab pier at the mouth of the Piscataqua River and summmer data for a station in the Salmon Falls (SF) River. This suite of stations provides …

Nitrogen, Phosphorus, And Suspended Solids Concentrations In Tributaries To The Great Bay Estuary Watershed In 2008, Philip Trowbridge

PREP Reports & Publications

Nitrogen, phosphorus, and sediment loads to the Great Bay Estuary are a growing concern. In the 2006 State of the Estuaries report (NHEP, 2006), the New Hampshire Estuaries Project (now called the Piscataqua Region Estuaries Partnership or PREP) calculated the nitrogen load from tributaries to the Great Bay Estuary using data collected by the NH Department of Environmental Services. PREP needs to update this indicator for the 2009 State of the Estuaries report. Therefore, the purpose of this study was to collect representative data on nitrogen, phosphorus, and suspended sediment concentrations in tributaries to the Great Bay Estuary in 2008. …

Fish Effects On Ocean Current Observations In The Cariaco Basin, Jyotika I. Virmani, Robert H. Weisberg

Marine Science Faculty Publications

Multiple years of moored current meter observations from the Cariaco Basin show low‐frequency variations along with near‐inertial waves and further imply the persistent diurnal movement of fish species known to populate the basin. In agreement with short‐term observations from 1979, the more recent observations with acoustic Doppler current profilers provide evidence of the multidecadal presence and behavior of these species. An unwanted corollary, however, is a bias in both the vertical and horizontal components of velocity due to the fish movements. Removal of this fish bias results in large data loss (approximately 72%); however, an interpolated, non‐biased data set is …

Fisheries Occasional Publication No. 63 - Western Rock Lobster Ecological Risk Assessment, Department Of Fisheries, Western Australia, International Risk Consultants Group Of Companies

Fisheries Occasional Publications

This Ecological Risk Assessment, conducted by IRC Environment (part of International Risk Consultants) and Department of Fisheries WA (FWA) was the result of an initiative by the WA Fishing Industry Council (WAFIC) and (FWA). This report is based on a risk assessment workshop undertaken in February 2001 at the FWA Marine Research Laboratories in Waterman but includes additional background material to justify some of the rankings of the workshop.

The broad intent of the workshop was to provide a register of the potential main ecological risks that arise from the various activities carried out by the western rock lobster (WRL) …

Town Of Barrington Natural Resources Inventory: A Reference, Strafford Regional Planning Commission

PREP Reports & Publications

Barrington is very fortunate to have an abundance and wide variety of natural resources. Given the Town’s location in the fast-growing seacoast region of New Hampshire, development can be expected to place increasing pressures on the Town and its natural resource base. As described throughout this Natural Resources Inventory, there are many natural resources, special habitats and ecosystems that are valuable and worthy of further consideration for further study, preservation and/or active management. Current zoning ordinances and land use regulations provide some protections. However, the Town can take several additional approaches to maintain and protect its rural character, and itsspecial …

The Surface Circulation Of The Caribbean Sea And The Gulf Of Mexico As Inferred From Satellite Altimetry, Aida Alvera-Azcarate, Alexander Barth, Robert H. Weisberg

Marine Science Faculty Publications

The surface circulation of the Caribbean Sea and Gulf of Mexico is studied using 13 years of satellite altimetry data. Variability in the Caribbean Sea is evident over several time scales. At the annual scale, sea surface height (SSH) varies mainly by a seasonal steric effect. Interannually, a longer cycle affects the SSH slope across the current and hence the intensity of the Caribbean Current. This cycle is found to be related to changes in the wind intensity, the wind stress curl, and El Niño–Southern Oscillation. At shorter time scales, eddies and meanders are observed in the Caribbean Current, and …

Fisheries Occasional Publication No.057 - Introduced Marine Species In Western Australia, Department Of Fisheries Western Australia

Fisheries Occasional Publications

As the largest State in Australia, Western Australia (WA) has a long and relatively pristine coastline that stretches over 12,500 km, or over 20,700 km if the State’s 3,747 islands are included. The coast ranges over 20 degrees of latitude from the temperate south coast to the northern tip of the tropical Kimberley. There are a wide variety of coastal marine habitats in this vast area. The south coast has extensive white sandy beaches interspersed with granite headlands. A diverse range of nearly 800 species of temperate marine algae, or seaweeds, occurs in the area. With 26 species, the seagrasses …

Historical Account Of The Two Family-Group Names In Use For The Single Accepted Family Comprising The "Fish Blood Flukes", Stephen A. Bullard, Kirsten Jensen, Robin M. Overstreet

Faculty Publications

The family-group name for the "fish blood flukes" is unstable, with both "Aporocotylidae Odhner, 1912" and "Sanguinicolidae von Graff, 1907 "in use for the single family. Although "Sanguinicolidae von Graff, 1907" (or "Graff, 1907") has been a widely-accepted family-group name for the fish blood flukes subsequent to Yamaguti's 1954 and 1958 synoptical publications ("Systema Helminthum"), a critical examination of the relevant literature, much of it published in German during 1900 through 1926, reveals that "Aporocotylidae Odhner, 1912" is the earliest available family-group name for these flukes. The name Aporocotylidae, moreover, was in wide usage by alpha taxonomists before 1954 and …

Climate Change And Trophic Response Of The Antarctic Bottom Fauna, Richard B. Aronson, Ryan M. Moody, Linda C. Ivany, Daniel B. Blake, John E. Warner, Alexander Glass

Ocean Engineering and Marine Sciences Faculty Publications

Background As Earth warms, temperate and subpolar marine species will increasingly shift their geographic ranges poleward. The endemic shelf fauna of Antarctica is especially vulnerable to climate-mediated biological invasions because cold temperatures currently exclude the durophagous (shell-breaking) predators that structure shallow-benthic communities elsewhere. Methodology/Principal Findings We used the Eocene fossil record from Seymour Island, Antarctic Peninsula, to project specifically how global warming will reorganize the nearshore benthos of Antarctica. A long-term cooling trend, which began with a sharp temperature drop ~41 Ma (million years ago), eliminated durophagous predators—teleosts (modern bony fish), decapod crustaceans (crabs and lobsters) and almost all neoselachian …

The Functions And Values Of Fringing Salt Marshes In Northern New England, Usa, Pamela A. Morgan, David M. Burdick, Frederick T. Short

Environmental Studies Faculty Publications

Although large salt marshes of the northeastern United States have been studied extensively, very little is known about the smaller, fringing marshes in this area, despite the fact that they are a common habitat type. We compared the functions and values of five fringing salt marshes (FM) to those of five meadow marshes (MM) along the southern Maine/New Hampshire coast. Specifically we compared their primary production, soil organic matter content, plant diversity, sediment trapping ability and wave dampening properties. Also explored were the relationships between these functions and several physical characteristics at each site, including soil salinity, percent surface slope, …

Fisheries Research Report No. 183 - Development Of A Long-Term Program To Monitor Coastal Communities Within The Swan Region, Lynda M. Bellchambers

Fisheries Research Reports

Marine benthic communities along the metropolitan coast of Western Australia are varied and unique. The southward flowing Leeuwin Current brings warm water and tropical recruits whilst the cooler counter current, the Capes Current, brings the temperate recruits. The result is a mosaic of tropical species intermingled with the dominant temperate species. These areas sustain varied fish and invertebrate communities making this coast a highly desirable location for recreational and commercial use. Management strategies are in place that attempt to maintain the sustainability of this area including various fishery restrictions and the implementation of areas zoned as sanctuary zones (no-take). However, …

Grace-Based Estimates Of Terrestrial Freshwater Discharge From Basin To Continental Scales, Tajdarul H. Syed, James S. Famiglietti, Don Chambers

Marine Science Faculty Publications

In this study, new estimates of monthly freshwater discharge from continents, drainage regions, and global land for the period of 2003–05 are presented. The method uses observed terrestrial water storage change estimates from the Gravity Recovery and Climate Experiment (GRACE) and reanalysis-based atmospheric moisture divergence and precipitable water tendency in a coupled land–atmosphere water mass balance. The estimates of freshwater discharge are analyzed within the context of global climate and compared with previously published estimates. Annual cycles of observed streamflow exhibit stronger correlations with the computed discharge compared to those with precipitation minus evapotranspiration (P − E) in …

Fisheries Occasional Publication 61 - Proposed Quota Settings For The West Coast Rock Lobster Managed Fishery, Department Of Fisheries, Wa

Fisheries Occasional Publications

The former Minister for Fisheries asked the Rock Lobster Industry Advisory Committee (RLIAC) to provide him with a business case for a quota management system (QMS) in the West Coast Rock Lobster Managed Fishery, following renewed interest from industry for the introduction of a QMS. The business case consists of two components:

1. a management paper that describes the proposed quota management settings; and

2. an interactive spreadsheet financial model for licensees to explore the impact of the proposed management settings on their business. A RLIAC Working Group was established by RLIAC to develop the proposed QMS settings. Most of …