Marine Biology Commons^™

Assessing Respiration Rates And Nutrient Dynamics Of Aritifical Reef Biofilms And Bacterioplankton In The Mississippi Sound, Lynn Elizabeth Wilking

Master's Theses

Artificial reefs are primarily used to provide a suitable habitat for target fish populations, but the structures can also improve water quality and benefit non-target organisms. Laboratory incubation experiments were conducted in the presence of biofilm on rubble and in its absence to examine bacterial growth, community respiration, and nutrient dynamics at four artificial reef habitats in the Mississippi Sound. Biofilm samples were also collected from settlement plates deployed at each site and were analyzed for 813C and 81sN stable isotope content. Respiration rates were always higher in the presence of biofilm but bacterial abundance often declined over time, and …

Age, Growth, Mortality, And The Effects Of Trawling On Mortality Of The Longspine Porgy, Stenotomus Caprinus, Cher Marie Newman

Master's Theses

Stenotomus caprinus (Longspine Porgy) is one of the most abundant bycatch species caught in trawl fisheries in the northern Gulf of Mexico (GOM). Biological data of length, weight, and abundance have been collected since 1972 on the Southeast Area Monitoring and Assessment Program (SEAMAP) surveys with a variety of GOM species, including Longspine Porgy, using trawl nets during groundfish surveys. In 2010-2011 five Longspine Porgy were obtained from Groundfish and Pelagic surveys at each station for further analysis. Age distribution was determined through von Bertalanffy length and weight-age models. The samples were separated into two regions of the GOM to …

Determining The Extent And Characterizing Coral Reef Habitats Of The Northern Latitudes Of The Florida Reef Tract (Martin County), Brian K. Walker, David S. Gilliam

Marine & Environmental Sciences Faculty Articles

Climate change has recently been implicated in poleward shifts of many tropical species including corals; thus attention focused on higher-latitude coral communities is warranted to investigate possible range expansions and ecosystem shifts due to global warming. As the northern extension of the Florida Reef Tract (FRT), the third-largest barrier reef ecosystem in the world, southeast Florida (25–27° N latitude) is a prime region to study such effects. Most of the shallow-water FRT benthic habitats have been mapped, however minimal data and limited knowledge exist about the coral reef communities of its northernmost reaches off Martin County. First benthic habitat mapping …

Characterization Of Shark Movements On A Mesophotic Caribbean Coral Reef And Temporal Association With Fish Spawning Aggregations, Alexandra E. Pickard

HCNSO Student Theses and Dissertations

Habitat use of mesophotic coral reefs by sharks is largely unknown. However, it is well established that mesophotic reefs are the site of spawning aggregations for many species of teleost fish. These aggregations represent seasonal concentrations of potential prey biomass that may influence the habitat use of predatory species such as large sharks. I employed acoustic monitoring to examine the movements of three shark species [lemon shark (Negaprion brevirostris), tiger shark (Galeocerdo cuvier), and Caribbean reef shark (Carcharhinus perezi)] to determine 1) the comparative spatiotemporal patterns of mesophotic reef habitat use by the three …

Tracking Transmission Of Apicomplexan Symbionts In Diverse Caribbean Corals, Nathan L. Kirk, Raphael Ritson-Williams, Mary Alice Coffroth, Margaret W. Miller, Nicole D. Fogarty, Scott R. Santos

Marine & Environmental Sciences Faculty Articles

Symbionts in each generation are transmitted to new host individuals either vertically (parent to offspring), horizontally (from exogenous sources), or a combination of both. Scleractinian corals make an excellent study system for understanding patterns of symbiont transmission since they harbor diverse symbionts and possess distinct reproductive modes of either internal brooding or external broadcast spawning that generally correlate with vertical or horizontal transmission, respectively. Here, we focused on the under-recognized, but apparently widespread, coral-associated apicomplexans (Protista: Alveolata) to determine if symbiont transmission depends on host reproductive mode. Specifically, a PCR-based assay was utilized towards identifying whether planula larvae and reproductive …

A Comparison Of Site Fidelity And Habitat Use Of Red Snapper (Lutjanus Campechanus) To Evaluate The Performance Of Two Artificial Reefs In South Texas Utilizing Acoustic Telemetry, Andres Garcia

Theses and Dissertations - UTB/UTPA

Evaluation of artificial reefs is becoming an increasingly important component of fisheries management. This is particularly true for the northwestern Gulf of Mexico where natural hard substrate is limited and 359 petroleum platforms are scheduled for removal in 2013 due to the “idle iron” policy. This study compared the performance of two artificial reef configurations off the south Texas coast, the Texas Clipper and South Padre Island Near Shore Reefs that differ in material, depth, and distance from shore, with respect to behavior of red snapper, Lutjanus campechanus, an important recreational and commercial species. Red snapper were implanted with depth …

The Effects Of A Red Tide, Karenia Brevis Episode On The Benthic Macroinvertebrate Communities Of South Padre Island, Texas, Liana Lerma

Theses and Dissertations - UTB/UTPA

South Padre Island, Texas has experienced increasing frequency of harmful algal blooms (Karenia brevis) since the 1900’s, many of which resulted in massive fishes kills. In addition, shorebirds and other terrestrial wildlife deaths have been linked to K. brevis blooms prompting investigations of potential pathways by which brevetoxins may be transmitted to higher trophic levels. The benthic macrofanual community inhabiting the swash zone of sandy beaches consists primarily of filter feeding invertebrates which may serve as toxin bioaccumulators to secondary consumers of both marine and terrestrial food webs. The first reported mass mortality of swash zone benthic macrofauna on the …

The Rootscope: A Simple High-Throughput Screening System For Quantitating Gene Expression Dynamics In Plant Roots, Erin J. Kast , '15, Minh-Duyen T. Nguyen , '13, Rosalie E. Lawrence , '12, Christina Rabeler, Nicholas J. Kaplinsky

Biology Faculty Works

Background: High temperature stress responses are vital for plant survival. The mechanisms that plants use to sense high temperatures are only partially understood and involve multiple sensing and signaling pathways. Here we describe the development of the RootScope, an automated microscopy system for quantitating heat shock responses in plant roots.Results: The promoter of Hsp17.6 was used to build a Hsp17.6(p):GFP transcriptional reporter that is induced by heat shock in Arabidopsis. An automated fluorescence microscopy system which enables multiple roots to be imaged in rapid succession was used to quantitate Hsp17.6p: GFP response dynamics. Hsp17.6(p):GFP signal increased with temperature increases from …

Growth Of Tropical Dasyatid Rays Estimated Using A Multi-Analytical Approach, Owen R. O'Shea, Matias Braccini, Rory Mcauley, Conrad W. Speed, Mark G. Meekan

Fisheries Research Articles

We studied the age and growth of four sympatric stingrays: reticulate whipray, Himanutra uarnak (n=19); blue mask, Neotrygon kuhlii (n=34); cowtail, Pastinachus atrus (n=32) and blue-spotted fantail, Taeniura lymma (n=40) rays at Ningaloo Reef, a fringing coral reef on the north-western coast of western Australia. Age estimates derived from band counts within sectioned vertebrae ranged between 1 and 27 years (H. uarnak, 1 - 25 yrs.; N. kuhlii, 1.5 - 13 yrs.; P. atrus, 1 - 27 yrs. and T. lymma, 1 -11 yrs.). Due to limitations of sample sizes, we combined several analytical methods …

Accuracy Assessment Of Noaa's Florida Keys Benthic Habitat Map, Brian K. Walker, Ian Rodericks, Amanda Costaregni

Marine & Environmental Sciences Faculty Reports

This report describes the methodologies, analyses, and results for an independent accuracy assessment of a thematic benthic habitat map produced by NOAA for the Florida Keys. It is an analysis of four regional accuracy assessments. Over the course of the Florida Keys mapping project, NOAA amended part of the classification scheme. The original scheme for mapping benthic cover was a tiered approach where certain benthic cover categories were given priority over others (e.g. coral was most important). Recently, this was modified to a dominant benthic cover scheme where the habitat is characterized by the single most dominant cover type and …

Internet Reviews: Smithsonian Ocean Portal, John Creech

Library Scholarship

This column comprises a review of the Smithsonian Ocean Portal, an Internet resource created by Smithsonian Institution's Museum of Natural History.

Distribution Extension Of Escherbothrium Molinae Berman And Brooks, 1994 (Cestoda: Tetraphyllidea: Triloculariidae) In Urotrygon Sp. From The Pacific Coast Of Mexico, Francisco Zaragoza-Tapia, Scott Monks, Griselda Pulido-Flores, Juan Violante-González

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Cestodes collected from the spiral valves of the stingray Urotrygon sp. from the Pacific coast of Mexico were identified as Escherbothrium molinae Berman and Brooks, 1994. The first report of the species was from the Gulf of Nicoya and the Guanacaste coast, Costa Rica; this work represents the second report of the species since the original description and extends its distribution north to Acapulco, Guerrero, Mexico.

High Predation On Small Populations: Avian Predation On Imperiled Salmonids, Ann-Marie Osterback, Danielle Frechette, Andrew Shelton, Sean Hayes, Morgan Bond, Scott A. Shaffer, Jonathan Moore

Faculty Publications, Biological Sciences

Generalist predators can contribute to extinction risk of imperiled prey populations even through incidental predation. Quantifying predation on small populations is important to manage their recovery, however predation is often challenging to observe directly. Recovery of prey tags at predator colonies can indirectly provide minimum estimates of predation, however overall predation rates often remain unquantifiable because an unknown proportion of tags are deposited off‐colony. Here, we estimated overall predation rates on threatened wild juvenile steelhead Oncorhynchus mykiss by generalist adult Western Gulls Larus occidentalis in six central California (USA) watersheds. We estimated predation rates by gulls from the recapture of …

Novel Pathways For Injury From Offshore Oil Spills: Direct, Sublethal And Indirect Effects Of The Deepwater Horizon Oil Spill On Pelagic Sargassum Communities, Sean P. Powers, Frank J. Hernandez, Jr, Robert H. Condon, J. Marcus Drymon, Christopher M. Free

University Faculty and Staff Publications

The pelagic brown alga Sargassum forms an oasis of biodiversity and productivity in an otherwise featureless ocean surface. The vast pool of oil resulting from the Deepwater Horizon oil spill came into contact with a large portion of the Gulf of Mexico’s floating Sargassum mats. Aerial surveys performed during and after the oil spill show compelling evidence of loss and subsequent recovery of Sargassum. Expanding on the trends observed in the aerial surveys, we conducted a series of mesocosm experiments to test the effect of oil and dispersants on the vertical position and weight of the Sargassum complex ( …

University Scholar Series: Scott Shaffer, Scott Shaffer

University Scholar Series

A New Form Of Biotechnology: Novel Data Logging Devices Reveal Secrets About The Lives Of Marine Animals

On September 25, 2013, Dr. Scott Shaffer gave a talk titled “A New Form Of Biotechnology: Novel Data Logging Devices Reveal Secrets About The Lives Of Marine Animals” as part of the University Scholar Series hosted by Provost Ellen Junn at the Dr. Martin Luther King, Jr. Library. Dr. Shaffer’s research focuses on the ecology, physiology, and conservation of marine vertebrate species. Specifically, he uses novel smart technologies to study long-range movements, distribution, and behavior of wild seabirds and marine mammals. This new …

Shellfish Tissue Monitoring In Piscataqua Region Estuaries 2012, Matthew A. Wood, Philip R. Trowbridge

PREP Reports & Publications

Originally conducted by a committee of Canadian and US governments and university scientists, Gulfwatch examined the effects of decades of development and industrialization on the water quality of the Gulf of Maine as it relates to human health primarily through assessing contaminant exposure of marine organisms from 1993 to 2010. The NH Gulfwatch Program continues these efforts by collecting blue mussels at two sites in the Great Bay Estuary and one in the Hampron-Seabrook Estuary, and analyzes the organisms’ tissue for potentially harmful levels and concentrations of toxins including heavy metals, chlorinated pesticides, polychlorinated biphenyls (PCBs), and polycyclic aromatic hydrocarbons …

Shellfish Tissue Monitoring In Piscataqua Region Estuaries 2010 And 2011, Matthew A. Wood, Philip R. Trowbridge

PREP Reports & Publications

Conducted by a committee of Canadian and US government and university scientists, Gulfwatch examines the effects of decades of development and industrialization on the water quality of the Gulf as it relates to human health primarily through assessing contaminant exposure of marine organisms. Gulfwatch scientists collect blue mussels at over 60 US and Canadian sites Gulfwide, and analyze the organisms’ tissue for potentially harmful levels and concentrations of toxins including heavy metals, chlorinated pesticides, polychlorinated biphenyls (PCBs), and polycyclic aromatic hydrocarbons (PAHs).

Migratory Patterns And Habitat Use Of The Sand Tiger Shark (Carcharias Taurus) In The Western North Atlantic Ocean, Shara Marie Teter

HCNSO Student Theses and Dissertations

Large population declines for sand tiger sharks (Carcharias taurus) in parts of its global range are well documented, resulting in a strong need for biologically informed conservation and management measures. Although sand tigers in the western North Atlantic have been listed as a Species of Concern by the US government since 1997, details of their seasonal migratory movements and especially vertical habitat use patterns along the US East Coast are limited. Understanding these movement patterns is vital to reducing fishery-related mortality of these sharks and informing other management efforts aimed at recovery of their stocks in the US Atlantic. …

Reported Incidences Of Parasitic Infections In Marine Mammals From 1892 To 1978, John R. Felix

Zea E-Books Collection

The role of parasites in the lives and deaths of marine mammals has been scrutinized by biologists for decades, but the scientific literature prior to 1978 has been difficult to acquire and time-consuming to search. Now this new and extensive bibliography gives researchers a convenient resource for reviewing the classical literature on parasites of marine mammals so that historical infection prevalence and geographical distribution can be easily and properly assessed. This book contains detailed information about accepted (or suspected) taxonomic synonyms and geographical information about the host and/or parasite, covering the parasite groups Acanthocephala, Acarina, Anoplura, Cestoda, Nematoda, and Trematoda, …

Technical Appendix: Economic Impact Of Commercial Fisheries On Local County Economies From Catch In California National Marine Sanctuaries 2010, 2011 And 2012, Vernon R. Leeworthy, Desiree Jerome, Kelsey Schueler

Working Papers

This report documents the data and methods of estimation used in estimating the economic impact of commercial fishing catch from all four National Marine Sanctuaries in California on local county economies in terms of harvest revenue received by fishermen and the associated economic impacts, including multiplier impacts, on total output, value added, income and the number of full- and part-time jobs.

This report is part of a series of reports meeting the priorities in the “Office of National Marine Sanctuaries (ONMS) West Coast Region Socioeconomic Plan FY 2013 – FY 2014” and “national program priorities” on establishing the connection between …

A Quantitative Evaluation Of Growth In Leptodea Fragilis Before And After The Arrival Of Zebra Mussels In Lake Erie, Elizabeth Barkett, Robert A. Krebs, Matthew T. Begley

Undergraduate Research Posters 2013

The arrival of zebra mussels in the Great Lakes in the 1980’s marked several environmental changes, most notably in freshwater mussels in the Unionidae. There are no studies of population demographics of native Great Lake species before this period of time. In this study, several recent shell collections of Leptodea fragilis, a fast-growing freshwater mussel, were made on various beaches along Lake Erie. To compare the effects of the zebra mussels on L. fragilis, we compared growth rates, determined from size and estimated age of shells, to additional collections of L. fragilis from 1941 to 1967available at the Cleveland Museum …

The General Qapp For Long Island Sound Volunteer Coastal Monitoring (With Adoption Form), Jamie M.P. Vaudrey, Kimberly Gallagher

Department of Marine Sciences

The General QAPP for Long Island Sound Volunteer Coastal Monitoring is designed to streamline the process of writing a QAPP for Monitoring Programs in the Long Island Sound area. This document does not replace guidance on developing a program and is not sufficient as a stand-alone document to guide the initial development and sample design process for a monitoring program.

Evaluation Of Current Community-Based Monitoring Efforts And Recommendations For Developing A Cohesive Network Of Support For Monitoring Long Island Sound Embayments., Jamie M.P. Vaudrey, Jamie Alonzo, Adrienne Esposito, Curt Johnson, Maureen Dolan Murphy, Charles Yarish

Department of Marine Sciences

This project focuses on Long Island Sound embayments and represents an exploration of the potential for coordination among community-based water quality monitoring groups, and coordination between community-based groups and data end users, including scientists and managers. Community-based monitoring groups represent a potential valuable source of water quality information. The development of standardized protocols, training methods and reporting procedures will serve to provide end users with the confidence necessary to utilize the data collected as part of community-based monitoring programs. Both groups of stakeholders stand to benefit from this type of coordination with the ultimate benefit being a healthier, better understood …

Buoy Gear- A Potential For Bycatch Reduction In The Small-Scale Swordfish Fisheries: A Florida Experience And Indian Ocean Perspective., Evgeny V. Romanov, David W. Kerstetter, Travis Allan Moore, Pascal Bach

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

A swordfish buoy gear, an innovative fishing practice developed in USA in early 2000s, provide a possibility of direct swordfish targeting yielding high CPUE of target species and very low bycatch levels. Here we present a summary of US experience and discuss potential application of this gear in the Indian Ocean region in the perspective of small-scale fisheries development and bycatch reduction.

Review Of Report On The “Status Of Nearshore Finfish Stocks In South-Western Western Australia: Australian Herring And Tailor”, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

A Pre-Zygotic Barrier To Hybridization In Two Con-Generic Species Of Scleractinian Corals, Andrew H. Baird, Vivian R. Cumbo, Joana Figueiredo, Saki Harii

Marine & Environmental Sciences Faculty Articles

Hybridization is often cited as a potential source of evolutionary novelty in the order Scleractinia. While hybrid embryos can be produced in vitro, it has been difficult to identify adult hybrids in the wild. Here, we tested the potential for hybridization between two closely related species in the family Fungiidae. We mixed approximately 5000 eggs of Ctenactis echinata with sperm from C. crassa. No hybrid embryos were produced. This observation adds to a growing body of evidence for pre-zygotic barriers to hybridization in corals and challenges the claim that hybridization is a major source of evolutionary novelty …

Penetration Of Uv-Visible Solar Radiation In The Global Oceans: Insights From Ocean Color Remote Sensing, Zhongping Lee, Chuanmin Hu, Shaoling Shang, Keping Du, Marlon Lewis, Robert Arnone, Robert Brewin

Faculty Publications

Penetration of solar radiation in the ocean is determined by the attenuation coefficient (K-d()). Following radiative transfer theory, K-d is a function of angular distribution of incident light and water's absorption and backscattering coefficients. Because these optical products are now generated routinely from satellite measurements, it is logical to evolve the empirical K-d to a semianalytical K-d that is not only spectrally flexible, but also the sun-angle effect is accounted for explicitly. Here, the semianalytical model developed in Lee et al. (2005b) is revised to account for the shift of phase function between molecular and particulate scattering from the short …

Great Bay Estuary Eelgrass Monitoring Program For 2013, Philip Trowbridge

Quality Assurance Project Plans

No abstract provided.

Eelgrass Distribution In The Great Bay Estuary For 2012, Frederick T. Short

PREP Reports & Publications

Eelgrass in the Great Bay Estuary declined in both distribution and biomass between 2011 and 2012, continuing the long-term trend of eelgrass loss. In 2012, eelgrass was once again mainly present in the Great Bay itself with limited distribution in Portsmouth Harbor and Little Bay. Eelgrass distribution in Great Bay decreased 1.5% between 2011 and 2012 with no change in biomass. In Great Bay,eelgrass distribution has declined 36% since 1996 and biomass is a quarter of what it was in the early 1990s. Nuisance macroalgae in Great Bay continued to proliferate in 2012 and to impact eelgrass by smothering eelgrass …

Demography And Population Dynamics Of Massive Coral Communities In Adjacent High Latitude Regions (United Arab Emirates), Kristi A. Foster, Greg Foster

HCAS Student Articles

Individual massive coral colonies, primarily faviids and poritids, from three distinct assemblages within the southeastern Arabian Gulf and northwestern Gulf of Oman (United Arab Emirates) were studied from 2006–2009. Annual photographic censuses of approximately 2000 colonies were used to describe the demographics (size class frequencies, abundance, area cover) and population dynamics under “normal” environmental conditions. Size class transitions included growth, which occurred in 10–20% of the colonies, followed in decending order by partial mortality (3–16%), colony fission (<5%) and ramet fusion (<3%). Recruitment and whole colony mortality rates were low (<0.7 colonies/m2) with minimal interannual variation. Transition matrices indicated that the Arabian Gulf assemblages have declining growth rates (λ<1) whereas the massive coral population is stable (λ = 1) in the Gulf of Oman. Projection models indicated that (i) the Arabian Gulf population and area cover declines would be exacerbated under 10-year and 16-year disturbance scenarios as the vital rates do not allow for recovery to pre-disturbance levels during these timeframes, and (ii) the Gulf of Oman assemblage could return to its pre-disturbance area cover but its overall population size would not fully recover under the same scenarios.