Marine Biology Commons^™

Relative Abundances Of The Recently Introduced Barnacles, Megabalanus Coccopoma And An Unidentified Species Of Megabalanus, In The Southeastern U.S., Jennifer L. Tyson

Honors College Theses

ABSTRACT

Megabalanus coccopoma is a prominent invasive species off the coast of Georgia. Recently, among collected samples thought to be M. coccopoma, several individuals of an unidentified species of barnacle were found. The species has been identified as a Megabalanus species, but is still unidentified to the species level. Species identification is difficult due to morphological variation, inconsistent taxonomic keys, and unknown origin. In this study I developed a method to accurately distinguish M. coccopoma from the unidentified Megabalanus sp. using sequence differences in the mitochondrial Cytochrome Oxidase I (COI) gene. This study will provide an accurate estimate of …

Dissipation Rate Of Turbulent Kinetic Energy In Diel Vertical Migrations: Comparison Of Ansys Fluent Model To Measurements, Cayla Whitney Dean, Alexander Soloviev, Amy Hirons, Tamara M. Frank, J. D. Wood

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Recent studies suggest that diel vertical migrations of zooplankton may have an impact on ocean mixing, though details are not completely clear. A strong sound scattering layer of zooplankton undergoing diel vertical migrations was observed in Saanich Inlet, British Colombia, Canada by Kunze et al. (2006). In this study, a shipboard 200- kHz echosounder was used to track vertical motion of the sound scattering layer, and microstructure profiles were collected to observe turbulence. An increase of dissipation rate of turbulent kinetic energy by four to five orders of magnitude was measured during diel vertical migrations of zooplankton in one case …

Estimating Growth And Mortality In Elasmobranchs: Are We Doing It Correctly?, Brian J. Moe

HCNSO Student Theses and Dissertations

The instantaneous mortality rate (M) is an important parameter in elasmobranch management and conservation, but is difficult to estimate directly. Thus, indirect estimates based on relatively easily obtained life history parameters are commonly used. Many indirect methods incorporate one or more parameters from the von Bertalanffy growth model (VBGM), which is often criticized for its inability to describe changes in growth associated with maturity. The Lester growth model (LGM) is a biphasic alternative to the VBGM that incorporates trade-offs between reproduction, growth, and survival, and may therefore more accurately estimate M. I used published data from 29 …

Draft Genome Sequence Of The Piezotolerant And Crude Oil-Degrading Bacterium Rhodococcus Qingshengii Strain Tuhh-12, Sara A. Lincoln, Trinity L. Hamilton, Ana Gabriela Valladares Juárez, Martina Schedler, Jennifer L. Macalady, Rudolf Müller, Katherine H. Freeman

C-IMAGE Publications

We report here the draft genome sequence of Rhodococcus qingshengii strain TUHH-12. The ability of this piezotolerant bacterium to grow on crude oil and tetracosane as sole carbon sources at 150 × 10(5) Pa makes it useful in studies of hydrocarbon degradation under simulated deep-sea conditions.

Strategic Assessment Of Fisheries Independent Monitoring Programs In The Gulf Of Mexico, Paul Mark Suprenand, Michael Drexler, David L. Jones, Cameron H. Ainsworth

Marine Science Faculty Publications

This study evaluates information produced from 14 fisheries independent monitoring programs (FIM) in the Gulf of Mexico. We consider the uniqueness of information from each program and its usefulness in estimating fisheries management indices. Biomass values of 35 functional groups are extracted from an operating model (Ecospace) in such a way as to replicate the patterns of historic FIM samplings. Observation error is added to these data in order to create a set of pseudo data that replicates the type and quality of information obtained from FIM programs. The pseudo data then are put into a separate fishery assessment model …

The Impact Of Stegastes Planifrons On The Resurgence Of Acropora Cervicornis, Zebulon Martin

Undergraduate Distinction Papers

This study examines resurgent patches of Acropora cervicornis in the “Coral Gardens” back-reef area of Ambergris Caye, Belize. The goal of this study was to understand the carbonate budget and ecosystem dynamics of this successful reef, with an emphasis on the role of Stegastes planifrons (the herbivorous threespot damselfish), on the health of the coral. Benthic survey data from photo-quadrats along six transects were supplemented with counts of S. planifrons, their chimney scars, and sea urchin (Echinometra viridis) to assess their impact on the reef. The data indicate a positive correlation between the density of Stegastes …

Magnetic Island Marine Park Zones: Effects Of Fishing Restrictions On Predatory Reef Fish Populations, Casey Wilson

Independent Study Project (ISP) Collection

Over the past several decades industrialized fishing practices have decimated fish stocks worldwide. Top-down trophic cascades have occurred within many marine ecosystems as top predators are removed. Numerous regions world wide are being designated as marine park “no-take” zones in order to aid in the recovery of these species and with the hope that surplus population will spillover into unprotected zones..

This study aimed to determine if there were significant differences in abundances of three major families of predatory reef fish (Serranidae, Lutjanidae, and Lethrinidae) between fringing reefs located in four bays of various zones around Magnetic Island, QLD. Data …

Chemical Warfare In Narragansett Bay: Determining The Allelopathic Effects Of Ulva, Fiona P. Mackechnie, Lindsay A. Green, Carol S. Thornber

Senior Honors Projects

Several species of Ulva are commonly found in the waters of Narragansett Bay, especially in eutrophic waters, where they can form fast growing blooms that can have ecological and economic consequences. The formation and release of allelopathic chemicals has been previously documented in some species of Ulva, including Ulva lactuca. Three species of blade-forming Ulva are commonly found in Narragansett Bay and coastal Rhode Island, namely, U. compressa, U. lactuca, and U. rigida. We aimed to determine if these three species of Ulva had allelopathic effects by testing their impacts on the growth of other macroalgae. Cystoclonium purpureum …

Fauna Census Of Intertidal Cliffs, Mangapwani, Zanzibar, Emily Jankowski

Independent Study Project (ISP) Collection

Due to their extreme variations in condition over the course of a day, intertidal zones are challenging environments. Organisms that live there must be prepared to cope with both exposure and submersion, not to mention the temperature variations that accompany these conditions. The differing tolerances and adaptations of various organisms to these conditions generally cause patterns of vertical zonation to occur in the intertidal zone, especially when the shore is steep and rocky. Understanding the ecology of shore environments is important to future conservation and management efforts. This study was conducted on a beach in Mangapwani, Zanzibar at at 6˚ …

Marine Animalia Organism Diversity And Reef Condition On Two Reef Sites At Big Creek Beach And Boca Del Drago, Bocas Del Toro, Panamá, Bri Tiffany

Independent Study Project (ISP) Collection

Ocean acidification, climate change, overfishing, and coastal development are endangering coral reefs across the globe. In Bocas del Toro, Panamá, coral reefs are especially threatened by the rapid growth in tourism and the subsequent anthropogenic effects caused by an increased human presence. To evaluate reef condition in this area, a study comparing percent coverage of live and dead coral as well as the diversity of marine Animalia organisms was conducted at one reef site in Big Creek beach and one reef site in Boca del Drago, Isla Colón, Bocas del Toro. It was predicted that dead coral cover would be …

Fisheries Management Paper No.273 - Blue Swimmer Crab Resource Of The Peel-Harvey Estuary Harvest Strategy, 2015-2020. Version 1.0, Department Of Fisheries, Western Australia

Fisheries Management Papers

Harvest strategies for aquatic resources managed by the Western Australian Department of Fisheries (the Department) are formal documents prepared to support the decision-making processes required to ensure the management of these resources are consistent with the principles of Ecologically Sustainable Development (ESD). The objectives of ESD are reflected in the objects of the Fish Resources Management Act 1994 (FRMA), Section 3, and the draft Aquatic Resources Management Bill 2013 (ARMB), Clause 9, which will replace the FRMA once enacted.

The publication of these strategies is intended to make the decision-making considerations and processes for the management of specified aquatic resources …

Seasonal Warm-Water Refuge And Sanctuary Usage By The Florida Manatee (Trichechus Manatus Latirostris) In Kings Bay, Citrus County, Florida, Danielle C. Sattelberger

HCNSO Student Theses and Dissertations

The largest Florida manatee (Trichechus manatus latirostris) aggregation at a natural warm-water refuge occurs in Kings Bay, Crystal River, FL. Over the last 32 years, the U.S. Fish and Wildlife Service and the State of Florida have created a network of manatee protection areas within Kings Bay including a year-round refuge designation and seven Federal manatee sanctuaries during the winter manatee season (November 15 – March 31). Aerial survey data collected between 1983 and 2012 was used to examine the seasonal change in manatee distribution within Kings Bay in order to assess the effectiveness of current sanctuary sizes …

Evaluation Of Endocrine Disrupting Chemicals In The Florida Coastal Pelagic Fish Complex Following The Deepwater Horizon Oil Spill Event, Rachel Hickey

HCNSO Student Theses and Dissertations

Following the BP Deepwater Horizon oil spill event, there was a critical need to assess the effects of the oil and dispersant chemicals on the coastal pelagic fish complex in the Gulf of Mexico and the Florida Straits. The objective of this study was to determine if spilled crude oil and dispersant chemicals have posed an ecological risk to the coastal pelagic fish complex through the detection of vitellogenesis. Crude oil containing polycyclic aromatic hydrocarbons (PAHs), dispersant chemicals and other estrogen-mimicking compounds are suspected to induce vitellogenin production in male and immature female fish, normally only produced by sexually mature …

Land-Based Coral Nurseries: A Valuable Tool For Production And Transplantation Of Acropora Cervicornis, Keri L. O'Neil

HCNSO Student Theses and Dissertations

Coral nurseries have become a popular and successful method to produce coral fragments for reef-restocking and restoration projects worldwide. Numerous in-situ coral nurseries have been established and many studies have focused on the most effective way to produce coral fragments in offshore nurseries. In contrast, production of coral fragments in land-based nurseries is rarely studied despite a growing knowledge of coral husbandry and coral aquaculture. Little data exist on the success of tank-raised corals when transplanted back into reef environments. This thesis presents the results of a study designed to assess the use of land-based coral nurseries in production of …

Histology And Ultrastructure Of Montastraea Cavernosa And Porites Astreiodes During Regeneration And Recruitment: Anthropogenic Stressors And Transplant Success, Dorothy-Ellen A. Renegar

HCNSO Student Theses and Dissertations

Corals combine photosynthesis and calcification in an intricate and delicately balanced relationship to form large biomineralized structures that are dominant features of tropical coastlines worldwide. Coral reefs have great scientific and economic importance but have recently experienced widespread decline attributed to increasing anthropogenic pressure on reef systems. Physical damage events, such as ship groundings, when coupled with existing nutrient stress and changing global climate present a poor outlook for successful natural recovery of reef communities. The main goal of the proposed research is to better understand how environmental factors, both local and global, affect the coral holobiont and influence overall …

The Influence Of Spines On Predation Of Devonian Brachiopods, Broc S. Kokesh

Undergraduate Research Symposium 2015

Brachiopods are small animals that live on the seafloor and are prominent in the Devonian fossil record from 420 to 360 million years ago. An interesting feature of some species is that large spines develop on their exterior surfaces and are thought to have evolved for defense against predators. Fortunately, this hypothesis can be tested by observing wound marks indicative of attempted predation as described by Zhang et al. (2011). In this study, I examined wound marks on fossils of the spiny brachiopod Atrypa rockfordensis and the spineless Atrypa devoniana. Results show that A. rockfordensis only experienced attacks at …

Kinematics Of Terrestrial Locomotion In Harbor Seals And Gray Seals: Importance Of Spinal Flexion By Amphibious Phocids, Jennifer N. Garrett, Frank E. Fish

Biology Faculty Publications

No abstract provided.

Estimation Of Shape Of The Sea Lion For Hydrodynamic Analysis. Response To 'Cambered Profile Of A California Sea Lion's Body', Frank E. Fish

Biology Faculty Publications

No abstract provided.

Distribution And Identification Of Fish Eggs In An Internal Wave Transport Mechanism, Claire Kuelbs

Undergraduate Honors Theses

Internal waves have been proven to transport invertebrate larvae onshore, but there has been little indication on whether internal waves transport fish eggs. Fish eggs are typically buoyant and are often found in neustonic samples, and internal waves often cause fronts that transport oils and other light particles. This research aims to determine whether there are patterns to the distribution of fish eggs. One possibility is that offshore fish eggs can be transported onshore, to nearshore nursery habitats. Before 2003, when genetic barcoding was proposed as an identification mechanism, fish eggs could only be identified visually, using color, size, and …

The Pelagic Artisanal Fishing Of Mangapwani, Northern Unguja, Shavonne Stanek

Independent Study Project (ISP) Collection

A total of 99 interviews were conducted. Over a period of 28 days from April 5- May 2, 2015, a total of 75 interviews were conducted with 72 fishermen, 2 drying processors and 1 Bwana Diko. During a 5 day preliminary period from March 12-16, 2015, a total of 24 interviews were conducted with 7 fishermen and 14 drying processors. The interviews focused on their work in the local fishing industry, the amount of fish caught and dried, and their opinions on the sustainability of their industry. The interviews were conducted using a translator who relayed the responses in English …

Fish Use Of Largely Unexplored Sub-Tidal Habitats In The Hinchinbrook Channel Estuary, Queensland, Alexandra Parisien

Independent Study Project (ISP) Collection

This study examines the use of sub-tidal open-bottom, rocky, and seagreass habitats by the Siganus genus (herbivores), Gerres genus (benthivores), and planktivores in the Hinchinbrook Channel Estuary in Queensland, Australia. The Hinchinbrook Channel Estuary, a tropical estuary cutting between Hinchinbrook Island and the Australian mainland, is surrounded primarily by mangroves. Its sub-tidal habitats are largely unexplored due to factors such as low visibility and the presence of estuarine crocodiles. In this study, I reviewed 699 underwater videos collected by James Cook University PhD candidate Michael Bradley in order to analyze feeding and movement behavior of pre-identified fish.

The results of …

Seagrass Deterrence To Mesograzer Herbivory: Evidence From Mesocosm Experiments And Feeding Preference Trials, Latina Steele, John F. Valentine

Biology Faculty Publications

Two laboratory experiments documented the effects of mesograzers (i.e. the gastropod Crepidula ustulatulina and the isopod Paracerceis caudata) on phenolic acid and condensed tannin production in 2 regionally abundant seagrasses—Thalassia testudinum (turtlegrass) and Halodule wrightii (shoalgrass). Subsequent paired choice experiments tested the hypothesis that phenolic acids and condensed tannins produced by these seagrasses deter mesograzer feeding. At the scale of the shoot, grazing by gastropods and isopods led to ~40 to 50% decreases in concentrations of some phenolic acids and ~20% decreases in condensed tannins in turtlegrass leaves. At a more refined spatial scale, concentrations of 2 of these compounds …

Ocean Food Systems, Barry A. Costa-Pierce

Marine Sciences Faculty Presentations

Presentation given during session on Food Justice, where Barton Seaver, Director of the Healthy and Sustainable Food Program in the T.H. Chan School of Public Health at Harvard, described a great nutrition and health crisis in America perpetuated by groups demarketing seafood and promoting meat in the American diet. Seaver noted that Americans consume about 167 lbs. of meat a year and only 14 lbs. of seafood, leading to connected public health and environmental crises, heart disease, and obesity.

According to presenter Barry Costa-Pierce:

Seafood systems in the USA are our most insane foods; America imports nearly every seafood we …

The Status Of Fishes In The Missouri River, Nebraska: Blue Sucker Cycleptus Elongatus, Kirk D. Steffensen, Sam Stukel, Dane A. Shuman

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Blue Sucker Cycleptus elongatus are a large-bodied, benthic fish that are considered an indicator species for riverine health. A combination of historic commercial fishing and anthropogenic modifications to riverine habitat led to blue suckers being listed as a candidate species for the federal threatened or endangered species list in 1993. However, they were never designated a federally protected species. Locally, Blue Suckers are currently listed as a Nebraska Natural Legacy Project’s Tier 1 species but population changes and trends have not been quantified. Therefore, the objective of this paper was to evaluate the current population status of Blue Sucker in …

A Decline In Benthic Foraminifera Following The Deepwater Horizon Event In The Northeastern Gulf Of Mexico, Patrick Schwing, Isabel Romero, Gregg R. Brooks, David Hastings, Rebekka A. Larson, David Hollander

C-IMAGE Publications

Sediment cores were collected from three sites (1000–1200 m water depth) in the northeastern Gulf of Mexico from December 2010 to June 2011 to assess changes in benthic foraminiferal density related to the Deepwater Horizon (DWH) event (April-July 2010, 1500 m water depth). Short-lived radioisotope geochronologies (²¹⁰Pb, ²³⁴Th), organic geochemical assessments, and redox metal concentrations were determined to relate changes in sediment accumulation rate, contamination, and redox conditions with benthic foraminiferal density. Cores collected in December 2010 indicated a decline in density (80–93%). This decline was characterized by a decrease in benthic foraminiferal density and benthic foraminiferal …

Changes In Spatial Patterns Of Caragana Stenophylla Along A Climatic Drought Gradient On The Inner Mongolian Plateau, Li-Na Xie, Hong-Yu Guo, Christopher A. Gabler, Qing-Fang Li, Cheng-Cang Ma

School of Earth, Environmental, & Marine Sciences Faculty Publications

Few studies have investigated the influence of water availability on plant population spatial patterns. We studied changes in the spatial patterns of Caragana stenophylla along a climatic drought gradient within the Inner Mongolian Plateau, China. We examined spatial patterns, seed density, “nurse effects” of shrubs on seedlings, transpiration rates and water use efficiency (WUE) of C. stenophylla across semi-arid, arid, and intensively arid zones. Our results showed that patches of C. stenophylla populations shifted from a random to a clumped spatial pattern towards drier environments. Seed density and seedling survival rate of C. stenophylla decreased from the semi-arid zone to …

Growth Of A Deep-Water, Predatory Fish Is Influenced By The Productivity Of A Boundary Current System, Hoang Minh Nguyen, Adam N. Rountrey, Jessica J. Meeuwig, Peter G. Coulson, Ming Feng, Stephen J. Newman, Anya M. Waite, Corey B. Wakefield, Mark G. Meekan

Fisheries Research Articles

The effects of climate change on predatory fishes in deep shelf areas are difficult to predict because complex processes may govern food availability and temperature at depth. We characterised the net impact of recent environmental changes on hapuku (Polyprion oxygeneios), an apex predator found in continental slope habitats (>200 m depth) by using dendrochronology techniques to develop a multi-decadal record of growth from otoliths. Fish were sampled off temperate south-western Australia, a region strongly influenced by the Leeuwin Current, a poleward-flowing, eastern boundary current. The common variance among individual growth records was relatively low (3.4%), but the …

Dynamics Of Marine Bacterial Community Diversity Of The Coastal Waters Of The Reefs, Inlets, And Wastewater Outfalls Of Southeast Florida, Alexandra Mandina Campbell, Jay Fleisher, Christopher D. Sinigalliano, James R. White, Jose V. Lopez

Marine & Environmental Sciences Faculty Articles

Coastal waters adjacent to populated southeast Florida possess different habitats (reefs, oceanic inlets, sewage outfalls) that may affect the composition of their inherent microbiomes. To determine variation according to site, season, and depth, over the course of 1 year, we characterized the bacterioplankton communities within 38 nearshore seawater samples derived from the Florida Area Coastal Environment (FACE) water quality survey. Six distinct coastal locales were profiled – the Port Everglades and Hillsboro Inlets, Hollywood and Broward wastewater outfalls, and associated reef sites using culture-independent, high-throughput pyrosequencing of the 16S rRNA V4 region. More than 227,000 sequences helped describe longitudinal taxonomic …

Memorandum: Quality Assurance Of 2013 Great Bay Estuary Eelgrass Mapping Conducted By Fred Short, Matthew A. Wood

Quality Assurance Project Plans

The purpose of this memorandum is to document the results of quality assurance checks on the 2013 Great Bay Estuary Eelgrass Mapping conducted by Fred Short.

Ocean Currents Generate Large Footprints In Marine Palaeoclimate Proxies, Erik Van Sebille, Paolo Scussolini, Jonathan V. Durgadoo, Frank J. C. Peeters, Arne Biastoch, Wilbert Weijer, Chris Turney, Claire B. Paris, Rainer Zahn

C-IMAGE Publications

Fossils of marine microorganisms such as planktic foraminifera are among the cornerstones of palaeoclimatological studies. It is often assumed that the proxies derived from their shells represent ocean conditions above the location where they were deposited. Planktic foraminifera, however, are carried by ocean currents and, depending on the life traits of the species, potentially incorporate distant ocean conditions. Here we use high-resolution ocean models to assess the footprint of planktic foraminifera and validate our method with proxy analyses from two locations. Results show that foraminifera, and thus recorded palaeoclimatic conditions, may originate from areas up to several thousands of kilometres …