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Full-Text Articles in Marine Biology

The Effect Of Ocean Plastic On Plankton And Marine Ecosystems, Aiden Brinkmann '22, Eric Shackelford '22 Apr 2020

The Effect Of Ocean Plastic On Plankton And Marine Ecosystems, Aiden Brinkmann '22, Eric Shackelford '22

Student Leadership Exchange (SLX)

Title: The Effect of Ocean Plastic on Plankton and Marine Ecosystems Abstract: This presentation aims to raise awareness for the harm plastics in our oceans are causing analysis and visualization of scientific data. It is largely inspired by the fourteenth United Nations Sustainable Development Goal: Life Below Water. The datasets used primary fall into two categories: ocean plastic content statistics and plankton population demographics. The presentation will also explore plankton’s role as the base of many aquatic ecosystems and model the impact a population decline could have on these ecosystems. The effects ocean plastics can have on our modern society …


Hiding In Plain Sight: Elopomorph Larvae Are Important Contributors To Fish Biodiversity In A Low-Latitude Oceanic Ecosystem, Jon A. Moore, Dante Fenolio, April Coan, Tracey Sutton Apr 2020

Hiding In Plain Sight: Elopomorph Larvae Are Important Contributors To Fish Biodiversity In A Low-Latitude Oceanic Ecosystem, Jon A. Moore, Dante Fenolio, April Coan, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

Leptocephalus larvae of elopomorph fishes are a cryptic component of fish diversity in nearshore and oceanic habitats. However, identifying those leptocephali can be important in illuminating species richness in a region. Since the Deepwater Horizon oil spill in 2010, sampling of offshore fishes in the epi-, meso-, and upper bathypelagic depth strata of the northern Gulf of Mexico resulted in 8989 identifiable specimens of leptocephalus larvae or transforming juveniles, in 118 taxa representing 83 recognized and established species and an additional 35 distinctive leptocephalus morphotypes not yet linked to a known described species. Leptocephali account for ∼13% of the total …


Atlantic Spotted Dolphin (Stenella Frontalis) And Bottlenose Dolphin (Tursiops Truncatus) Nearshore Distribution, Bimini, The Bahamas, Skylar L. Muller Apr 2020

Atlantic Spotted Dolphin (Stenella Frontalis) And Bottlenose Dolphin (Tursiops Truncatus) Nearshore Distribution, Bimini, The Bahamas, Skylar L. Muller

HCNSO Student Theses and Dissertations

Bimini, The Bahamas, includes two islands surrounded by a diverse assemblage of ecosystems and a large array of organisms, including two delphinid species, Atlantic spotted dolphins (Stenella frontalis) and common bottlenose dolphins (Tursiops truncatus, inshore ecotype). Within a predefined nearshore zone, individuals of both species had largely overlapping distribution from 2003-2018; Atlantic spotted dolphins tended to disperse farther to the north while bottlenose dolphins were located farther south. The distribution of both species varied significantly by year. Atlantic spotted dolphin sightings varied across years and months while bottlenose dolphin sightings varied by month, with differences between …


A Temporal Analysis Of The Euphausiid Assemblage In The Gulf Of Mexico After The Deepwater Horizon Oil Spill, With Notes On Seasonal Reproduction, Nathan A. La Spina Apr 2020

A Temporal Analysis Of The Euphausiid Assemblage In The Gulf Of Mexico After The Deepwater Horizon Oil Spill, With Notes On Seasonal Reproduction, Nathan A. La Spina

HCNSO Student Theses and Dissertations

This thesis presents the results of the first multi-year study on the euphausiid assemblage in the vicinity of the Deepwater Horizon oil spill (DWHOS), covering depths down to 1000 m. There are no data on the euphausiid assemblage from this region prior to the oil spill; therefore, the data in this study were analyzed with respect to year (samples collected in 2011 vs. those collected between 2015 – 2016), and season (May vs. August) to determine if any trends were present. These results presented here show a statistically significant decrease in both abundance and biomass between 2011 and 2015 – …


Development And Characterization Of Genomic Resources For A Non-Model Marine Telost, The Red Snapper (Lutjanus Campechanus, Lutjanidae): Construction Of A High-Density Linkage Map, Anchoring Of Genome Contigs And Comparative Genomic Analysis, Adrienne E. Norrell, Kenneth L. Jones, Eric A. Saillant Apr 2020

Development And Characterization Of Genomic Resources For A Non-Model Marine Telost, The Red Snapper (Lutjanus Campechanus, Lutjanidae): Construction Of A High-Density Linkage Map, Anchoring Of Genome Contigs And Comparative Genomic Analysis, Adrienne E. Norrell, Kenneth L. Jones, Eric A. Saillant

Faculty Publications

The red snapper Lutjanus campechanus is an exploited reef fish of major economic importance in the Gulf of Mexico region. Studies of genome wide genetic variation are needed to understand the structure of wild populations and develop breeding programs for aquaculture but interpretation of these genome scans is limited by the absence of reference genome. In this work, the first draft of a reference genome was developed and characterized for the red snapper. P-454 and Illumina sequencing were conducted to produce paired-end reads that were assembled into reference contigs and scaffolds. The current assembly spans over 770 Mb, representing an …


Predation Efficiency And Prey Choice Of Estuarine Organisms Under Varying Anthropogenic Light Types And Intensities, Carmen Montalvo Apr 2020

Predation Efficiency And Prey Choice Of Estuarine Organisms Under Varying Anthropogenic Light Types And Intensities, Carmen Montalvo

HCNSO Student Theses and Dissertations

The coastlines of Florida are becoming highly urbanized, and the growing human population is affecting many mangrove and estuarine habitats. Exploring the predation efficiency and prey choice of estuarine organisms under varying anthropogenic light types and intensities could help determine anthropogenic effects. Mangrove habitats support both relatively large predators such as Blue Striped Grunt (Haemulon sciurus) and Gray Snapper (Lutjanus griseus), and a diversity of smaller taxa that occupy lower trophic levels, including Grass Shrimp (Palaemonetes paludosus) and Mosquitofish (Gambusia holbrooki). Understanding how predation (or predation evasion) efficiencies are affected by different …


A Survey Of The Order Tetraodontiformes On Coral Reef Habitats In Southeast Florida, Anne C. Sevon Apr 2020

A Survey Of The Order Tetraodontiformes On Coral Reef Habitats In Southeast Florida, Anne C. Sevon

HCNSO Student Capstones

The economy of south Florida relies, in part, on the recreation and tourism industries; both of which are integrally linked to Florida’s coastal ecosystems. These ecosystems provide tourists the opportunity to explore mangroves and the Everglades, enjoy local beaches, and experience the ocean with fishing charters, scuba diving adventures, and snorkeling. One of the major attractions for tourists is the Florida Reef Tract (FRT), which includes multiple coral reef and hardbottom habitats that extend from St. Lucie Inlet through the Florida Keys and into the Dry Tortugas. The FRT has been a major part of research because a wide range …


Effect Of Hyposaline Stress On Metabolic Rate Of The Invasive Mussel Mytilus Galloprovincialis, Hayley C. Hart Apr 2020

Effect Of Hyposaline Stress On Metabolic Rate Of The Invasive Mussel Mytilus Galloprovincialis, Hayley C. Hart

Honors Thesis

Climate change is predicted to decrease ocean salinity as the polar ice caps melt and the occurrence of precipitation events increases. Decreased ocean salinity (hyposalinity) may negatively impact marine invertebrates, especially marine mussels, as they are osmoconformers and their internal osmolarity depends on the solute concentration of their environment. Hyposalinity stress may influence cell function and alter mussel physiology. To compensate for the change in the environment, mussels may expend more energy to restore internal osmolarity, which can be assessed by quantifying metabolic rate. Thus, the purpose of our research was to examine the physiological response of Mytilus galloprovincialis, …


Sea Level Rise Vulnerability Analysis Of Mangrove Ecosystems Using Gis, Kayla Caldwell Apr 2020

Sea Level Rise Vulnerability Analysis Of Mangrove Ecosystems Using Gis, Kayla Caldwell

HCNSO Student Theses and Dissertations

Climate change is accelerating beyond what is natural due to excessive emissions from human activities. The sea level has been rising for many years and is currently at a rate of 3.6 mm/yr. Mangroves are known to only keep pace with a sea level rate of less than 1.2 mm/yr. Mangroves are particularly vulnerable to rising sea levels if they are not able to keep pace through vertical sediment accretion or inland migration. To test the vulnerability of the south Florida mangrove ecosystems to sea level rise, this study analyzed changes in the mangrove forest coverage of the Oleta River …


Influence Of Oil, Dispersant, And Pressure On Microbial Communities From The Gulf Of Mexico, Nuttapol Noirungsee, Steffen Hackbusch, Juan Viamonte, Paul Bubenheim, Andreas Liese, Rudolf Müller Apr 2020

Influence Of Oil, Dispersant, And Pressure On Microbial Communities From The Gulf Of Mexico, Nuttapol Noirungsee, Steffen Hackbusch, Juan Viamonte, Paul Bubenheim, Andreas Liese, Rudolf Müller

C-IMAGE Publications

The Deepwater Horizon incident in the Gulf of Mexico in 2010 released an unprecedented amount of petroleum hydrocarbons 1500 meters below the sea surface. Few studies have considered the influence of hydrostatic pressure on bacterial community development and activity during such spills. The goal of this study was to investigate the response of indigenous sediment microbial communities to the combination of increased pressure, hydrocarbons and dispersant. Deep-sea sediment samples collected from the northern Gulf of Mexico were incubated at atmospheric pressure (0.1 MPa) and at elevated pressure (10 MPa), with and without the addition of crude oil and dispersant. After …


Pelagic Habitat Partitioning Of Late-Larval And Juvenile Tunas In The Oceanic Gulf Of Mexico, Nina Pruzinsky, Rosanna Milligan, Tracey Sutton Apr 2020

Pelagic Habitat Partitioning Of Late-Larval And Juvenile Tunas In The Oceanic Gulf Of Mexico, Nina Pruzinsky, Rosanna Milligan, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

Tunas are ecologically important in pelagic ecosystems, but due to their high economic value, large-bodied species are overfished. Declines in fishery landings of large-bodied tuna species in the Gulf of Mexico (GoM) are expected to increase fishing pressures on unmanaged, small-bodied tuna species, whose life history traits are less known. While predicting spawning stocks and recruitment success typically focuses on estimates of larval abundances, juveniles may provide a better estimate of future adult stock sizes, as they are more likely to survive to adulthood because mortality rates scale inversely with body size. However, distributional studies on juveniles are rare, leading …


Methods For Mapping Algal Blooms: Do They Produce Similar Results?, Paige Denney Apr 2020

Methods For Mapping Algal Blooms: Do They Produce Similar Results?, Paige Denney

Showcase of Undergraduate Research and Creative Endeavors (SOURCE)

Algal blooms occur when there is an overabundance of algae in a freshwater or saltwater body. Algal blooms often have negative effects on human health, the environment, and the economy. They increase during summer months due to heightened water temperatures. With the climate warming gradually, the occurrence of algal blooms will likely increase. Mapping algal blooms using geospatial data and analysis methods is incredibly important to understanding where algal blooms happen and how they have increased over time. In my research project, I use geospatial data to map an algal bloom in Lake St. Clair, Michigan. My data originate from …


Comparative Study Of The Effects Of Light On Photophore Ultrastructure From Two Families Of Deep-Sea Decapod Crustaceans: Oplophoridae And Sergestidae, Jamie E. Sickles Apr 2020

Comparative Study Of The Effects Of Light On Photophore Ultrastructure From Two Families Of Deep-Sea Decapod Crustaceans: Oplophoridae And Sergestidae, Jamie E. Sickles

HCNSO Student Theses and Dissertations

Counterillumination, the mechanism by which pelagic species produce bioluminescence to replace the light blocked by their bodies to hide their silhouettes, has been known for over 100 years. However, little is known about how these animals are able to so precisely replicate the intensity of downwelling light. The recent discovery of opsins in photophores (Bracken-Grissom et al. 2020) suggests that these autogenic organs (i.e. non-bacterial) may be sensitive to light, in addition to their function of emitting visible light. The study presented here is 1) the first ultrastructural assessment of photophores in species Systellaspis debilis, Janicella spinicauda, Parasergestes armatus, …


An Investigation Into The Factors Influencing Growth And Survival Of Caribbean Acroporid Corals In A Floating Nursery, Cassie M. Vanwynen Apr 2020

An Investigation Into The Factors Influencing Growth And Survival Of Caribbean Acroporid Corals In A Floating Nursery, Cassie M. Vanwynen

HCNSO Student Theses and Dissertations

For decades, coral reef ecosystems have been in decline. To promote recovery, restoration efforts have been implemented for many degraded reefs across the globe. In the Caribbean, there is restoration focus on the coral genus Acropora. Current methods target Acropora cervicornis and A. palmata, two threatened species of branching coral that can mate to form a hybrid taxon, A. prolifera. By including the hybrid in restoration efforts, researchers may better understand how this taxon may promote nursery expansion and outplanting in restoration efforts. Establishing efforts in novel areas may further advance restoration methods by comparing location differences in nursery …


How Can We Change Gut Microbiota For Healthy Lives?, Elizaveta Shmakova Apr 2020

How Can We Change Gut Microbiota For Healthy Lives?, Elizaveta Shmakova

Scientific Communication News

No abstract provided.


What Is The Winter Limiting Nutrient In Urban Reservoirs? A Case Study, Precious Nyabami Apr 2020

What Is The Winter Limiting Nutrient In Urban Reservoirs? A Case Study, Precious Nyabami

UCARE: Research Products

The importance of reservoirs is widely acknowledged by urban populations, yet little is understood scientifically about their ability to process nutrients deposited into them in winter. For example, when agricultural runoff is deposited in lakes in winter or any other season, eutrophication might arise in the spring. With increased eutrophication, several ecosystem services are lost and this leads to what several researchers call “the urban syndrome”. Some studies have been done on the winter limnology of lakes, yet little is understood about the above in reservoirs. The sustainability of urban reservoirs relies on understanding how the phytoplankton in urban reservoirs …


Spatial And Temporal Distribution Of Essential And Non-Essential Elements Recorded In Western Arctic Bowhead Whales (Balaena Mysticetus), Samantha L. Shore Apr 2020

Spatial And Temporal Distribution Of Essential And Non-Essential Elements Recorded In Western Arctic Bowhead Whales (Balaena Mysticetus), Samantha L. Shore

HCNSO Student Theses and Dissertations

Western Arctic bowhead whales, Balaena mysticetus, migrate annually among the Bering, Chukchi, and Beaufort seas. Foraging along their route, they use keratinous baleen to filter microscopic zooplankton from the water column. A single baleen plate from an adult bowhead whale grows continuously and stores 20+ years of dietary and environmental data. This study utilized induced coupled plasma-mass spectrometry (ICP-MS) to evaluate concentrations of 14 essential and non-essential elements in baleen samples from nine subsistence-harvested whales, yielding continuous data from 1958–1999 (n=148). Stable isotope data previously reported on these samples provided information on location (Beaufort Sea; Bering/Chukchi seas), season (winter; …


A First Comprehensive Baseline Of Hydrocarbon Pollution In Gulf Of Mexico Fishes, Erin Pulster, Adolfo Gracia, Maickel Armenteros, Gerardo Toro-Farmer, Susan M. Snyder, Brigid Carr, Madison Schwaab, Tiffany Nicholson, Justin Mrowicki, Steven Murawski Apr 2020

A First Comprehensive Baseline Of Hydrocarbon Pollution In Gulf Of Mexico Fishes, Erin Pulster, Adolfo Gracia, Maickel Armenteros, Gerardo Toro-Farmer, Susan M. Snyder, Brigid Carr, Madison Schwaab, Tiffany Nicholson, Justin Mrowicki, Steven Murawski

C-IMAGE Publications

Despite over seven decades of production and hundreds of oil spills per year, there were no comprehensive baselines for petroleum contamination in the Gulf of Mexico (GoM) prior to this study. Subsequent to the 2010 Deepwater Horizon (DWH) spill, we implemented Gulf-wide fish surveys extending over seven years (2011–2018). A total of 2,503 fishes, comprised of 91 species, were sampled from 359 locations and evaluated for biliary polycyclic aromatic hydrocarbon (PAH) concentrations. The northern GoM had significantly higher total biliary PAH concentrations than the West Florida Shelf, and coastal regions off Mexico and Cuba. The highest concentrations of biliary PAH …


The Southern Gulf Of Mexico: A Baseline Radiocarbon Isoscape Of Surface Sediments And Isotopic Excursions At Depth, Samantha H Bosman, Patrick Schwing, Rebekka A. Larson, Natalie E. Wildermann, Gregg R. Brooks, Isabel Romero, Joan-Albert Sanchez-Cabeza, Ana Carolina Ruiz-Fernández, Maria Luisa Machain-Castillo, Adolfo Gracia, Elva Escobar-Briones, Steven Murawski, David Hollander, Jeffrey P. Chanton Apr 2020

The Southern Gulf Of Mexico: A Baseline Radiocarbon Isoscape Of Surface Sediments And Isotopic Excursions At Depth, Samantha H Bosman, Patrick Schwing, Rebekka A. Larson, Natalie E. Wildermann, Gregg R. Brooks, Isabel Romero, Joan-Albert Sanchez-Cabeza, Ana Carolina Ruiz-Fernández, Maria Luisa Machain-Castillo, Adolfo Gracia, Elva Escobar-Briones, Steven Murawski, David Hollander, Jeffrey P. Chanton

C-IMAGE Publications

The southern Gulf of Mexico (sGoM) is home to an extensive oil recovery and development infrastructure. In addition, the basin harbors sites of submarine hydrocarbon seepage and receives terrestrial inputs from bordering rivers. We used stable carbon, nitrogen, and radiocarbon analyses of bulk sediment organic matter to define the current baseline isoscapes of surface sediments in the sGoM and determined which factors might influence them. These baseline surface isoscapes will be useful for accessing future environmental impacts. We also examined the region for influence of hydrocarbon deposition in the sedimentary record that might be associated with hydrocarbon recovery, spillage and …


Feeding Ecology Of Red Snapper (Lutjanus Campechanus) And Vermilion Snapper (Rhomboplites Aurorubens) Coexisting At The Louisiana Shelf-Edge Banks, Katherine M. Ellis Apr 2020

Feeding Ecology Of Red Snapper (Lutjanus Campechanus) And Vermilion Snapper (Rhomboplites Aurorubens) Coexisting At The Louisiana Shelf-Edge Banks, Katherine M. Ellis

LSU Master's Theses

Niche partitioning, the process by which competing species use different subsets of the available resources, is commonly used to explain the coexistence of closely related species. In the northwest Gulf of Mexico on the shelf-edge banks, red snapper (Lutjanus campechanus) and vermilion snapper (Rhomboplites aurorubens) are two coexisting closely related species. Yet, little is known about how these species partition resources. In this study, niche partitioning of red snapper and vermilion snapper was investigated using gut contents and stable isotopes. While dietary niche partitioning was apparent, the species relied upon similar prey and displayed isotopic niche overlap, …


Complete Mitochondrial Genome Of Carijoa Riisei (Duchassaing & Michelotti, 1860) (Octocorallia: Alcyonacea: Stolonifera: Clavulariidae), Erin E. Easton, David Hicks Apr 2020

Complete Mitochondrial Genome Of Carijoa Riisei (Duchassaing & Michelotti, 1860) (Octocorallia: Alcyonacea: Stolonifera: Clavulariidae), Erin E. Easton, David Hicks

School of Earth, Environmental, & Marine Sciences Faculty Publications

We report the first complete Stolonifera mitochondrial genome. Carijoa riisei (Duchassaing & Michelotti, 1860) isolate CLP2_A03 was collected by scuba at 32 m on the USTS Texas Clipper (27° 53.7827′N, 93° 36.2702′W). The complete mitogenome has the ancestral octocoral gene order for its 14 protein-coding genes, two rRNA genes, and one tRNA gene. It is 18,714 bp (30.7% A, 15.8% C, 18.8% G, and 34.7% T). Of the Alcyonacea mitogenomes published to date, it is most genetically similar (94% uncorrected) to Sinularia ceramensis Verseveldt, 1977 (NC_044122).


Changes In Reef Fish Community Structure Following The Deepwater Horizon Oil Spill, Justin P. Lewis, Joseph H. Tarnecki, Steven B. Garner, David D. Chagaris, William F. Patterson Iii Apr 2020

Changes In Reef Fish Community Structure Following The Deepwater Horizon Oil Spill, Justin P. Lewis, Joseph H. Tarnecki, Steven B. Garner, David D. Chagaris, William F. Patterson Iii

C-IMAGE Publications

Large-scale anthropogenic disturbances can have direct and indirect effects on marine communities, with direct effects often taking the form of widespread injury or mortality and indirect effects manifesting as changes in food web structure. Here, we report a time series that captures both direct and indirect effects of the Deepwater Horizon Oil Spill (DWH) on northern Gulf of Mexico (nGoM) reef fish communities. We observed significant changes in community structure immediately following the DWH, with a 38% decline in species richness and 26% decline in Shannon-Weiner diversity. Initial shifts were driven by widespread declines across a range of trophic guilds, …


An Ecopath With Ecosim Analysis On Offshore Petroleum Platform Influences On Gulf Of Mexico Red Snapper, Valentin Gomez Apr 2020

An Ecopath With Ecosim Analysis On Offshore Petroleum Platform Influences On Gulf Of Mexico Red Snapper, Valentin Gomez

LSU Master's Theses

Offshore oil and gas platforms have had a significant presence in the Gulf of Mexico since the 1950s. An important secondary function of these structures is that they provide artificial habitat to fisheries, most notably Red snapper. Policy changes intended to reduce the risk associated with aging infrastructure have reduced the number of standing platforms from 4044 to 1867 from 2001 to 2018. The effect this loss of habitat has on Red snapper was tested by creating three scenarios of platform changes and modeling the perturbation from 2005 to 2050. The simulation was accomplished using the ecological model Ecopath with …


Nearshore Vertical Distribution Of Barnacle Cyprids: Temporal Patterns And Hydrographic Variability, Gabriela Yamhure Apr 2020

Nearshore Vertical Distribution Of Barnacle Cyprids: Temporal Patterns And Hydrographic Variability, Gabriela Yamhure

Theses

Most benthic organisms living in the intertidal zone have planktonic larvae that reside temporarily in the water column before settling in their adult habitats. Larvae aggregate in offshore larval pools, and transport horizontally and vertically in the water to remain in the nearshore and during their pelagic life. While some horizontal transport of larvae can be attributed to advection, behavioral responses, like vertical swimming and buoyancy control, allow larvae to position themselves at depths where flow direction can be exploited. Thus, knowledge on how vertical larval distribution relates to physical processes can be fundamental to better understand larval transport. These …


Environmental Dna Metabarcoding Detects Mammal Use Of Stock Tanks And Natural Springs On The Prescott National Forest, K. A. Smith, Berenice Carreras Mendiolea, C. E. Benson, F. B. Anaya Apr 2020

Environmental Dna Metabarcoding Detects Mammal Use Of Stock Tanks And Natural Springs On The Prescott National Forest, K. A. Smith, Berenice Carreras Mendiolea, C. E. Benson, F. B. Anaya

Discovery Day - Prescott

Recent research has shown the viability of environmental DNA (eDNA) analysis as a tool for identifying species presence in aquatic ecosystems. However, there is limited research indicating the feasibility of eDNA as a survey tool in water sources such as springs and stock tanks. Because of the scarcity of water in the high desert landscape of Arizona, natural springs and stock tanks are an important water resource. In this study, we examined whether 16S rRNA metabarcoding could detect mammal eDNA in springs and stock tanks in the Prescott National Forest. During summer 2019, we collected and analyzed water samples at …


Performance Evaluation Of Cetacean Species Distribution Models Developed Using Generalized Additive Models And Boosted Regression Trees, Elizabeth A. Becker, James V. Carretta, Karin A. Forney, Jay Barlow, Stephanie Brodie, Ryan Hoopes, Michael G. Jacox, Sara M. Maxwell, Jessica V. Redfern, Nicholas B. Sisson, Heather Welch, Elliott L. Hazen Apr 2020

Performance Evaluation Of Cetacean Species Distribution Models Developed Using Generalized Additive Models And Boosted Regression Trees, Elizabeth A. Becker, James V. Carretta, Karin A. Forney, Jay Barlow, Stephanie Brodie, Ryan Hoopes, Michael G. Jacox, Sara M. Maxwell, Jessica V. Redfern, Nicholas B. Sisson, Heather Welch, Elliott L. Hazen

Biological Sciences Faculty Publications

Species distribution models (SDMs) are important management tools for highly mobile marine species because they provide spatially and temporally explicit information on animal distribution. Two prevalent modeling frameworks used to develop SDMs for marine species are generalized additive models (GAMs) and boosted regression trees (BRTs), but comparative studies have rarely been conducted; most rely on presence-only data; and few have explored how features such as species distribution characteristics affect model performance. Since the majority of marine species BRTs have been used to predict habitat suitability, we first compared BRTs to GAMs that used presence/absence as the response variable. We then …


A Reexamination Of The Freshwater Mussel Community Of The Little Miami River, Emily Davis Apr 2020

A Reexamination Of The Freshwater Mussel Community Of The Little Miami River, Emily Davis

Undergraduate Honors Thesis Projects

Understanding the changes in biodiversity and local freshwater mussel populations is critical to mitigate the risks to these populations. Freshwater ecosystems continue to degrade rapidly. The freshwater mussel community of the Little Miami River is degraded and has been in decline for many years. The biodiversity contained within freshwater ecosystems is lost at unprecedented rates influenced by human activity. Freshwater mussels play a key role in understanding the effects of human activity on freshwater ecosystems as well as maintaining the health of freshwater habitats. However, they are also sensitive to changes and disturbances, in their ecosystems. This study involved monitoring …


The Simulated Biological Response To Southern Ocean Eddies Via Biological Rate Modification And Physical Transport, Tyler Rohr, Cheryl S. Harrison, Matthew C. Long, Peter Gaube, Scott C. Doney Apr 2020

The Simulated Biological Response To Southern Ocean Eddies Via Biological Rate Modification And Physical Transport, Tyler Rohr, Cheryl S. Harrison, Matthew C. Long, Peter Gaube, Scott C. Doney

School of Earth, Environmental, & Marine Sciences Faculty Publications

We examine the structure and drivers of anomalous phytoplankton biomass in Southern Ocean eddies tracked in a global, multiyear, eddy-resolving, 3-D ocean simulation of the Community Earth System Model.We examine how simulated anticyclones and cyclones differentially modify phytoplankton biomass concentrations, growth rates, and physical transport. On average, cyclones induce negative division rate anomalies that drive negative net population growth rate anomalies, reduce dilution across shallower mixed layers, and advect biomass anomalously downward via eddy-induced Ekman pumping. The opposite is true in anticyclones. Lateral transport is dominated by eddy stirring rather than eddy trapping. The net effect on anomalous biomass can …


Eddy-Modified Iron, Light, And Phytoplankton Cell Division Rates In The Simulated Southern Ocean, Tyler Rohr, Cheryl S. Harrison, Matthew C. Long, Peter Gaube, Scott C. Doney Apr 2020

Eddy-Modified Iron, Light, And Phytoplankton Cell Division Rates In The Simulated Southern Ocean, Tyler Rohr, Cheryl S. Harrison, Matthew C. Long, Peter Gaube, Scott C. Doney

School of Earth, Environmental, & Marine Sciences Faculty Publications

We examine the effects of Southern Ocean eddies on phytoplankton cell division rates in a global, multiyear, eddy‐resolving, 3‐D ocean simulation of the Community Earth System Model. We first identify and track eddies in the simulation and validate their distribution and demographics against observed eddy trajectory characteristics. Next, we examine how simulated cyclones and anticyclones differentially modify iron, light, and ultimately population‐specific cell division rates. We use an eddy‐centric, depth‐averaged framework to explicitly examine the dynamics of the phytoplankton population across the entire water column within an eddy. We find that population‐averaged iron availability is elevated in anticyclones throughout the …


Adjustment Of A Coastal Buoyant Outflow Under Tidal And Wind Forcing, A K M Nahid Hasan Apr 2020

Adjustment Of A Coastal Buoyant Outflow Under Tidal And Wind Forcing, A K M Nahid Hasan

Theses and Dissertations

The discharge of brackish water from estuaries typically forms distinct coastal plumes, often visible through their color signature due to sediment load and particulate matter from rivers. The processes of mixing and dispersion of coastal plumes are subjected to natural variations in the magnitude and timing of freshwater inflows, tides and meteorological conditions. This study presents shipboard observation of the bulge region of a buoyant plume off Winyah Bay, SC. The observation comprises downward looking 600 and 1200 kHz ADCP (Acoustic Doppler Current Profiler) and CTD measurements. Along with standard CTD casts, water samples were collected to analyze and determine …