Marine Biology Commons^™

The Expanded Footprint Of The Deepwater Horizon Oil Spill In The Gulf Of Mexico Deep-Sea Benthos, Michael G. Reuscher, Jeffrey G. Baguley, Paul A. Montagna

C-IMAGE Publications

The 2010 Deepwater Horizon blowout off the coast of Louisiana caused the largest marine oil spill on record. Samples were collected 2–3 months after the Macondo well was capped to assess damage to macrofauna and meiofauna communities. An earlier analysis of 58 stations demonstrated severe and moderate damage to an area of 148 km². An additional 58 archived stations have been analyzed to enhance the resolution of that assessment and determine if impacts occurred further afield. Impacts included high levels of total petroleum hydrocarbons (TPH) and polycyclic aromatic hydrocarbons (PAH) in the sediment, low diversity, low evenness, and …

Combined And Independent Effects On Hypoxia And Tributylin On Mrna Expression And Physiology Of The Eastern Oyster (Crassostrea Virginica), Ann Fairly Barnett, James H. Gledhill, Robert J. Griffitt, Marc Slattery, Deborah J. Gochfeld, Kristine L. Willett

Faculty Publications

Oyster reefs are vital to estuarine health, but they experience multiple stressors and globally declining populations. This study examined effects of hypoxia and tributyltin (TBT) on adult Eastern oysters (Crassostrea virginica) exposed either in the laboratory or the field following a natural hypoxic event. In the laboratory, oysters were exposed to either hypoxia followed by a recovery period, or to hypoxia combined with TBT. mRNA expression of HIF1-α and Tβ-4 along with hemocyte counts, biomarkers of hypoxic stress and immune health, respectively, were measured. In field-deployed oysters, HIF1-α and Tβ-4 expression increased, while no effect on hemocytes was …

Shallow-Water Coral Communities Support The Separation Of Marine Ecoregions On The West-Central Florida Gulf Coast, Brian K. Walker, Shelby Eagan, Cory Ames, Sandra Brooke, Sean Keenan, Rene Baumstark

Marine & Environmental Sciences Faculty Articles

Florida’s west coast is a 170,000 km² bedrock shelf (west Florida shelf, WFS) comprised of north-south discontinuous carbonate outcroppings extending more than 200 km from the intertidal zone to a depth of 200 m. These outcrops support diverse benthic communities, which contribute to a multi-billion dollar recreational and commercial fishing industry, yet only about 5% of their extent has been studied in detail. Benthic communities shift over a 6.5° geographic range, but the locations of these shifts are not well-defined. Previous studies have suggested a break in biogeographic regions at Tampa Bay, south at Cape Romano, and north at …

Antioxidant, Anti-Inflammatory, And Hep G2 Cell Growth-Inhibitory Effects Of Aqueous-Ethanol Extracts Obtained From Non-Puffed And Compressional-Puffed Sargassum Crassifolium, Cheng-Yuan Wang, Tien-Chiu Wu, Chien-Hui Wu, Yung-Hsiang Tsai, Shun-Min Chung, Yong-Han Hong, Chun-Yung Huang

Journal of Marine Science and Technology–Taiwan

There is growing interest in the bioactive components of marine algae due to their biomedical importance. In this study, a compressional-puffing (CP) process was adopted to pretreat algal samples of Sargassum crassifolium (SC), and the bioactive components of non-puffed and compressional-puffed SCs were extracted using aqueous-ethanol solution. Two extracts, namely, NPSC (non-puffed) and CPSC (compressional-puffed) were obtained, and their compositions were analyzed and compared. It was found that the composition of CPSC extract was different from that of NPSC. Further biological activity studies revealed that extracts of both NPSC and CPSC exhibited antioxidant activity, but only NPSC extract showed anti-inflammatory …

Benchmarking And Parameter Sensitivity Of Physiological And Vegetation Dynamics Using The Functionally Assembled Terrestrial Ecosystem Simulator (Fates) At Barro Colorado Island, Panama, Charles D. Koven, Ryan G. Knox, Rosie A. Fisher, Jeffrey Q. Chambers, Bradley O. Christoffersen, Stuart J. Davies, Matteo Detto

School of Earth, Environmental, & Marine Sciences Faculty Publications

Plant functional traits determine vegetation responses to environmental variation, but variation in trait values is large, even within a single site. Likewise, uncertainty in how these traits map to Earth system feedbacks is large. We use a vegetation demographic model (VDM), the Functionally Assembled Terrestrial Ecosystem Simulator (FATES), to explore parameter sensitivity of model predictions, and comparison to observations, at a tropical forest site: Barro Colorado Island in Panama. We define a single 12-dimensional distribution of plant trait variation, derived primarily from observations in Panama, and define plant functional types (PFTs) as random draws from this distribution. We compare several …

Effectiveness Of Topical Antibiotics In Treating Corals Affected By Stony Coral Tissue Loss Disease, Karen L. Neely, Kevin A. Macaulay, Emily K. Hower, Michelle A. Dobler

Marine & Environmental Sciences Faculty Articles

Since 2014, Stony Coral Tissue Loss Disease (SCTLD) has led to mass mortality of the majority of hard coral species on the Florida Reef Tract. Following the successful treatment of SCTLD lesions on laboratory corals using water dosed with antibiotics, two topical pastes were developed as vehicles to directly apply antibiotic treatments to wild corals. These pastes were tested as placebos and with additions of amoxicillin on active SCTLD lesions on multiple coral species. The effectiveness of the pastes without antibiotics (placebo treatments) was 4% and 9%, no different from untreated controls. Adding amoxicillin to both pastes significantly increased effectiveness …

Trip Bs01 - Perc Pll Trip Bs01 - Jun-July 2020 Set Data, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Trip Dk01 - Perc Pll Trip Dk01 - Jun-July 2020 Set 1, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Trip Dk01 - Perc Pll Trip Dk01 - Jun-July 2020 Set 3, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Trip Dk01 - Perc Pll Trip Dk01 - Jun-July 2020 Set 4, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Trip Bs01 - Perc Pll Trip Bs01 - Jun-July 2020 Set 1, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Trip Dk01 - Perc Pll Trip Dk01 - Jun-July 2020 Set 7, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Trip Dk01 - Perc Pll Trip Dk01 - Jun-July 2020 Set 5, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Trip Dk01 - Perc Pll Trip Dk01 - Jun-July 2020 Set 9, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Trip Dk01 - Perc Pll Trip Dk01 - Jun-July 2020 Set 10, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Trip Dk01 - Perc Pll Trip Dk01 - Jun-July 2020 Set 12, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Trip Dk01 - Perc Pll Trip Dk01 - Jun-July 2020 Set 8, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Trip Dk01 - Perc Pll Trip Dk01 - Jun-July 2020 Set 2, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Trip Dk01 - Perc Pll Trip Dk01 - Jun-July 2020 Trip Data, David Kerstetter, Sean T. Wilms, Brittany N. Savercool, Ellyn Willse

PERC Pelagic Longline Field Datasheets

Field datasheets from pelagic longline sets in the western North Atlantic from 2020-2022.

Results Of The Non-Lethal Smart Drumline Trial In South-Western Australia Between 21 February 2019 And 20 February 2020, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Minion-In-Arms: Nanopore Sequencing To Expedite Barcoding Of Specimen-Rich Macrofaunal Samples From Autonomous Reef Monitoring Structures, Jia Jin Marc Chang, Yin Cheong Aden Ip, Andrew G. Bauman, Danwei Huang

Marine & Environmental Sciences Faculty Articles

Autonomous Reef Monitoring Structure (ARMS) are standardized devices for sampling biodiversity in complex marine benthic habitats such as coral reefs. When coupled with DNA sequencing, these devices greatly expand our ability to document marine biodiversity. Unfortunately, the existing workflow for processing macrofaunal samples (>2-mm) in the ARMS pipeline—which involves Sanger sequencing—is expensive, laborious, and thus prohibitive for ARMS researchers. Here, we propose a faster, more cost-effective alternative by demonstrating a successful application of the MinION-based barcoding approach on the >2 mm-size fraction of ARMS samples. All data were available within 3.5–4 h, and sequencing costs relatively low at approximately …

Cal Poly Pier Master Plan, Troy A. Lawson

Master's Theses

The Cal Poly Pier (Pier) Master/Facility Plan (FP) document provides the vision of the future for the Pier, a marine science research facility. The Plan facilitates project development and management of the Pier while meeting university and department research goals. Specifically, the FP document establishes goals and strategies to direct long-term development of the Pier, streamlines agency approval and permit requirements, provides context for pier management, and assists the permitting process for future development as it relates to regulatory permits and programmatic growth on the Cal Poly Pier to help meet goals of the Center for Coastal Marine Sciences (CCMS). …

Categorizing Zonal Productivity On The Continental Shelf With Nutrient-Salinity Ratios, Jongsun Kim, Piers Chapman, Gilbert Rowe, Steven F. Dimarco

School of Earth, Environmental, & Marine Sciences Faculty Publications

Highlights

• Identifying riverine influence on productivity in the northern Gulf of Mexico
• Use of nutrient/salinity plots to differentiate inputs from two rivers
• Verifying Rowe-Chapman (2002) hypothesis with in situ data

Abstract

Coastal ocean productivity is often dependent on riverine sources of nutrients, yet it can be difficult to determine how far the influence of the river extends. The northern Gulf of Mexico (GOM) receives freshwater and nutrients discharged mainly from the Mississippi and Atchafalaya Rivers. We used nutrient/salinity relationships to (i) differentiate the nutrient inputs of the two rivers and (ii) determine the potential extent of the zones where productivity …

Potential Predictability Of Net Primary Production In The Ocean, Kristen M. Krumhardt, Nicole S. Lovenduski, Matthew C. Long, J. Y. Luo, K. Lindsay, S. Yeager, Cheryl S. Harrison

School of Earth, Environmental, & Marine Sciences Faculty Publications

Interannual variations in marine net primary production (NPP) contribute to the variability of available living marine resources, as well as influence critical carbon cycle processes. Here we provide a global overview of near-term (1 to 10 years) potential predictability of marine NPP using a novel set of initialized retrospective decadal forecasts from an Earth System Model. Interannual variations in marine NPP are potentially predictable in many areas of the ocean 1 to 3 years in advance, from temperate waters to the tropics, showing a substantial improvement over a simple persistence forecast. However, some regions, such as the subpolar Southern Ocean, …

Temporal And Spatial Trends Of Dead Copepods In The Northern Gulf Of Mexico In Relation To The Deepwater Horizon Oil Spill, Jessica L. Tolan

LSU Master's Theses

Zooplankton are a critical link between primary producers and higher trophic levels in the marine environment. They play a critical role in carbon cycling, are an important food source for commercially important species, and are excellent indicator genera for environmental changes that take place in marine ecosystems. This research quantified temporal and spatial patterns of dead copepods in response to the Deepwater Horizon Oil Spill (DWH) site using ZooSCAN imaging technologies. Research showed that the proportion of dead copepods (showed evidence of decay but no physical damage due to predation) increased with depth, and at time periods closest to the …

Multiple Hydrocarbon Data From Mangrove Forests Collected During A Coastal Survey Conducted In The Bay Of Campeche, Southern Gulf Of Mexico From 2016-08-09 To 2016-08-10, Isabel Romero, David Hollander

C-IMAGE data

This survey was conducted in mangrove forests from the Bay of Campeche (Mexico) in August 2016 to search for remnants of the Ixtoc-1 spill. This study focused on (1) the chemical composition and concentration of oil weathering products, (2) weathering processes, and (3) fate and potential toxicological impacts. This dataset contains hydrocarbon concentrations, date and location (longitude and latitude) of sample collection. The measurements of hydrocarbons were made using Agilent 7680B gas chromatograph coupled with an Agilent 7010 triple quadrupole mass spectrometer. This dataset supports the publication: Radović, J. R., Romero, I. C., Oldenburg, T. B. P., Larter, S. R., …

The Evolution Of Bivalve Shell Matrix Proteins, Mark Ira Duhon Ii

LSU Doctoral Dissertations

This dissertation focuses on the molecular underpinnings surrounding the evolution of the biomineralized shells of marine bivalves. Bivalve molluscs synthesize remarkably complex shells from calcium carbonate and an organic matrix of proteins secreted from the dorsal edge of the mantle. Molecular analyses of shell matrix proteins (SMPs) have suggested high rates of gene turnover despite the conserved nature of the shell itself. Here, I used proteomic and transcriptomic data to identify the SMPs and other biomineralization proteins from seven bivalve species that diverged 3-513 Mya. Contrary to previous studies that identified only a few shared biomineralization transcripts across the Bivalvia, …

Effects Of Climate And Land-Use Changes On Fish Catches Across Lakes At A Global Scale, Yu-Chun Kao, Mark W. Rogers, David B. Bunnell, Ian G. Cowx, Song S. Qian, Orlane Anneville, T. Douglas Beard Jr., Alexander Brinker, J. Robert Britton, René Chura-Cruz, Natasha J. Gownaris, James R. Jackson, Külli Kangur, Jeppe Kolding, Anatol A. Lukin, Abigail J. Lynch, Norman Mercado-Silva, Rodrigo Moncayo-Estrada, Friday J. Njaya, Ilia Ostrovsky, Lars G. Rudstam, Alfred L.E. Sandström, Yuichi Sato, Humberto Siguayro-Mamani, Andy Thorpe, Paul A.M. Van Zwieten, Pietro Volta, Yuyu Wang, András Weiperth, Olaf L.F. Weyl, Joelle D. Young

Environmental Studies Faculty Publications

Globally, our knowledge on lake fisheries is still limited despite their importance to food security and livelihoods. Here we show that fish catches can respond either positively or negatively to climate and land-use changes, by analyzing time-series data (1970–2014) for 31 lakes across five continents. We find that effects of a climate or land-use driver (e.g., air temperature) on lake environment could be relatively consistent in directions, but consequential changes in a lake-environmental factor (e.g., water temperature) could result in either increases or decreases in fish catch in a given lake. A subsequent correlation analysis indicates that reductions in fish …

Uncovering The Role Of Symbiodiniaceae Assemblage Composition And Abundance In Coral Bleaching Response By Minimizing Sampling And Evolutionary Biases, Timothy D. Swain, Simon Lax, Vadim Backman, Luisa A. Marcelino

Marine & Environmental Sciences Faculty Articles

Background

Biodiversity and productivity of coral-reef ecosystems depend upon reef-building corals and their associations with endosymbiotic Symbiodiniaceae, which offer diverse functional capabilities to their hosts. The number of unique symbiotic partners (richness) and relative abundances (evenness) have been hypothesized to affect host response to climate change induced thermal stress. Symbiodiniaceae assemblages with many unique phylotypes may provide greater physiological flexibility or form less stable symbioses; assemblages with low abundance phylotypes may allow corals to retain thermotolerant symbionts or represent associations with less-suitable symbionts.

Results

Here we demonstrate that true richness of Symbiodiniaceae phylotype assemblages is generally not discoverable from …

Porewater Carbonate Chemistry Dynamics In A Temperate And A Subtropical Seagrass System, Theodor Kindeberg, Nicholas R. Bates, Travis A. Courtney, Tyler Cyronak, Alyssa Griffin, Fred T. Mackenzie, May-Linn Paulsen, Andreas J. Andersson

Marine & Environmental Sciences Faculty Articles

Seagrass systems are integral components of both local and global carbon cycles and can substantially modify seawater biogeochemistry, which has ecological ramifications. However, the influence of seagrass on porewater biogeochemistry has not been fully described, and the exact role of this marine macrophyte and associated microbial communities in the modification of porewater chemistry remains equivocal. In the present study, carbonate chemistry in the water column and porewater was investigated over diel timescales in contrasting, tidally influenced seagrass systems in Southern California and Bermuda, including vegetated (Zostera marina) and unvegetated biomes (0–16 cm) in Mission Bay, San Diego, USA …