Animal Sciences Commons^™

Protocol For Monitoring Aquatic Invertebrates Of Small Streams In The Heartland Inventory & Monitoring Network, Version 2.1, David E. Bowles, Michael H. Williams, Hope R. Dodd, Lloyd W. Morrison, Janice A. Hinsey, J. Tyler Cribbs, Gareth A. Rowell, Michael D. Debecker, Jennifer L. Haack-Gaynor, Jeffrey M. Williams

United States National Park Service: Publications

Executive Summary

The Heartland Inventory and Monitoring Network (HTLN) is a component of the National Park Service’s (NPS) strategy to improve park management through greater reliance on scientific information. The purposes of this program are to design and implement long-term ecological monitoring and provide information for park managers to evaluate the integrity of park ecosystems and better understand ecosystem processes. Concerns over declining surface water quality have led to the development of various monitoring approaches to assess stream water quality. Freshwater streams in network parks are threatened by numerous stressors, most of which originate outside park boundaries. Stream condition and …

Molecular Characterization Of A Marine Turtle Tumor Epizootic, Profiling External, Internal And Postsurgical Regrowth Tumors, Kelsey Yetsko, Jessica A. Farrell, Nicholas B. Blackburn, Liam Whitmore, Maximilian R. Stammnitz, Jenny Whilde, Catherine B. Eastman, Devon Rollinson Ramia, Ana C. Leandro

School of Medicine Publications

Sea turtle populations are under threat from an epizootic tumor disease (animal epidemic) known as fibropapillomatosis. Fibropapillomatosis continues to spread geographically, with prevalence of the disease also growing at many longer-affected sites globally. However, we do not yet understand the precise environmental, mutational and viral events driving fibropapillomatosis tumor formation and progression.

Here we perform transcriptomic and immunohistochemical profiling of five fibropapillomatosis tumor types: external new, established and postsurgical regrowth tumors, and internal lung and kidney tumors. We reveal that internal tumors are molecularly distinct from the more common external tumors. However, they have a small number of conserved potentially …

Structural Changes In The Oral Microbiome Of The Adolescent Patients With Moderate Or Severe Dental Fluorosis, Qian Wang, Xuelan Chen, Huan Hu, Xiaoyuan Wei, Xiaofan Wang, Zehui Peng, Rui Ma, Qian Zhao, Jiangchao Zhao, Jianguo Liu, Feilong Deng

Animal Science Faculty Publications and Presentations

Dental fluorosis is a very prevalent endemic disease. Although oral microbiome has been reported to correlate with different oral diseases, there appears to be an absence of research recognizing any relationship between the severity of dental fluorosis and the oral microbiome. To this end, we investigated the changes in oral microbial community structure and identified bacterial species associated with moderate and severe dental fluorosis. Salivary samples of 42 individuals, assigned into Healthy (N=9), Mild (N=14) and Moderate/Severe (M&S, N=19), were investigated using the V4 region of 16S rRNA gene. The oral microbial community structure based on Bray Curtis and Weighted …

In Vitro Characterization Of Chicken Gut Bacterial Isolates For Probiotic Potentials, Anita Mandal, Rabindra K. Mandal, Yichao Yang, Bhuwan Khatri, Byung-Whi Kong, Young Min Kwon

Poultry Science Faculty Publications and Presentations

Probiotics often play an important role in improving gut health in chickens through multiple mechanisms, including enhancement of tight junctions, nutrient acquisition, niche colonization, or coaggregation with enteric pathogens. The objective of this study was to characterize lactic acid bacteria (LAB) isolated from the gut of healthy broiler chickens for a number of phenotypes that might be indicative of good probiotic potentials. A total 40 bacterial isolates were isolated from 3-week-old chickens using Man, Rogosa and Sharpe (MRS) agar plates. The bacterial isolates were evaluated in vitro for motility, autoaggregation, pathogen inhibition, pH of overnight culture, …

Nose Color Of Charolais × British Crossbred Beef Steers Alters Marbling Score And Body Weight At A Common Degree Of Fatness In Steers Reared Under Similar Management From Birth Through Finishing, Thomas G. Hamilton, Zachary K. Smith

SDSU Beef Day 2021 Summary Publication

Objective:

The objective of this study was to determine if cattle could be sorted and performance could be predicted by nose color (Pink or Black) when carcass traits and body weight were evaluated at a common endpoint in Charolais x British crossbred beef steers. Pink nosed cattle were assumed to be progeny of Red Angus dams and black nosed cattle were assumed to be progeny of Black Angus dams.

Using Aerial Photogrammetry And Sexually Dimorphic Measurements To Investigate Seasonal Differences In School Composition Of Delphinus Spp. Off Southern California, Samantha Gm Leander

Theses

Insights into school composition can provide a means to understand basic biology and ecology, including reproductive patterns. They can also be applied to conservation assessments, allowing for better understanding of the potentially differential vulnerability of demographic groups to natural or anthropogenic disturbances that may influence their populations. However, the two subspecies of common dolphins in the waters off California (Delphinus delphis delphis and D. d. bairdii) form large, energetic groups that make characterization of school composition difficult. Remotely controlled drones now offer the opportunity for the study of school composition in Delphinus spp., allowing for precise morphometric measurements …

The Effects Of Temperature And Body Size On The Metabolism And Hypoxia Tolerance Of White Abalone (Haliotis Sorenseni) And Red Abalone (H. Rufescens), Stephanie Fan

Theses

In 2001, white abalone, Haliotis sorenseni, became the first marine invertebrate to be listed under the U.S. Endangered Species Act. Allee effects due primarily to overharvesting and disease resulted in individuals being too far apart for successful fertilization. Despite the fishery closure in 1996, H. sorenseni still shows no signs of recovery. Today, the White Abalone Recovery Consortium (WARC), a group that includes federal and state agencies, aquaculture organizations, academic institutions, and public aquaria, is working to recover this endangered species back from the brink of extinction.

In order to better understand the metabolic demands and hypoxia tolerance of the …

Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part Xxvi. Records Of Hottentotta Polystictus (Pocock, 1896), With Descriptions Of H. Haudensis Sp. N. And H. Nigrimontanus Sp. N. (Buthidae) From Somaliland, František Kovařík, Graeme Lowe

Euscorpius

The distribution of Hottentotta polystictus (Pocock, 1896) is summarized according to recently confirmed records. Two new species, Hottentotta haudensis sp. n. and H. nigrimontanus sp. n. from the Somaliland, are described, compared with H. polystictus, and fully illustrated with color photos showing their morphology, habitus and collection areas. H. haudensis sp. n. is the smallest known species of the genus Hottentotta Birula, 1908, while H. nigrimontanus sp. n. is larger than H. polystictus.

Longitudinal Assessment Of The Bovine Ocular Bacterial Community Dynamics In Calves, Alison Bartenslager, Nirosh D. Aluthge, John Dustin Loy, Matthew M. Hille, Matthew L. Spangler, Samodha C. Fernando

Department of Animal Science: Faculty Publications

Background: Infectious Bovine Keratoconjunctivitis (IBK), commonly known as pinkeye, is one of the most significant diseases of beef cattle. As such, IBK costs the US beef industry at least 150 million annually. However, strategies to prevent IBK are limited, with most cases resulting in treatment with antibiotics once the disease has developed. Longitudinal studies evaluating establishment of the ocular microbiota may identify critical risk periods for IBK outbreaks or changes in the microbiota that may predispose animals to IBK.

Results: In an attempt to characterize the establishment and colonization patterns of the bovine ocular microbiota, we conducted a longitudinal study …

Evaluation Of Kws Hybrid Rye On Growth Performance, Carcass Traits, And Efficiency Of Net Energy Utilization In Finishing Feedlot Steers, Warren Rusche, Julie Walker, Southeast South Dakota Research Farm, Becca Brattain, Zachary Smith

SDSU Beef Day 2021 Summary Publication

Objective
Our objectives were to determine the effects of hybrid rye inclusion on finishing steer performance and carcass characteristics, and to estimate net energy (NE) value.
Study Description
Predominately Angus steers (n = 240, initial shrunk bodyweight [BW] = 891 ± 40.8 pounds) were used in 117-d finishing experiment. Hybrid rye was used to replace either one-third, two-thirds, or 100% of dry-rolled corn (DRC) resulting in four treatments: [DRC:Rye, DM basis (60:0), (40:20), (20:40), and (0:60)] with six pens per treatment and 10 steers/pen. Performance adjusted NE values were calculated from performance and carcass data. Replacing DRC with rye linearly …

Functional Influence Of 14-3-3 (Ywha) Proteins In Mammals, Elizabeth Barley, Santanu De

Mako: NSU Undergraduate Student Journal

The 14-3-3 (YWHA) proteins are homologous, ubiquitous, and conserved in most organisms ranging from plants to animals and play important roles in regulating key cellular events such as cell signaling, development, apoptosis, etc. These proteins consist of seven isoforms in mammals, termed under Greek alphabetization: beta (β), gamma (γ), epsilon (ε), eta (η), tau/theta (τ), sigma (σ), and zeta (ζ). Each of these isoforms can interact with a plethora of binding partners and has been shown to serve a distinct role in molecular crosstalk, biological processes, and disease susceptibility. Protein 14-3-3 isoforms are scaffolding proteins capable of forming homodimers and …

Atlantic Sailfish (Istiophorus Albicans) Distribution Off The East Coast Of Florida From 2003 To 2018 In Response To Sea Surface Temperature, Meredith M. Pratt

Mako: NSU Undergraduate Student Journal

The Atlantic sailfish (Istiophorus albicans) ranges from 40°N to 40°S in the Western Atlantic Ocean and has great economic and recreational value for sport fishers. Off the east coast of Florida, recreational fishing boats often target this species due to its size, speed and strength. This project aimed to determine the relationship between sea surface temperature (SST) and the distribution of Atlantic sailfish caught and released over a fifteen-year period (2003 to 2018). Tagging information was collected from The Billfish Foundation and NOAA who have the most extensive programs for billfish. Using the time and location of each …

Effect Of Corn Silage Inclusion Level And Steroidal Implant Type On Growth Performance, Dietary Net Energy Utilization, Beef Production Per Acre And Apparent Total Tract Digestibility In Feedlot Finishing Steers, Elizabeth Buckhaus, Warren Rusche, Zachary Smith

SDSU Beef Day 2021 Summary Publication

Objective
The experimental objective was to determine the influence corn silage inclusion level and terminal implant type have on animal performance, carcass traits, and beef production per acre of cropland in finishing steers harvested at a common fatness endpoint.
Study Description
Maine-Anjou × Angus beef steers (n = 156 steers; initial BW 807 ± 81.9 lbs) were used in a 2 × 2 factorial arrangement finishing experiment at the Ruminant Nutrition Center in Brookings, SD. Steers were weighed on 2 consecutive days and assigned into 5 weight blocks. Dietary treatments consisted (DM basis) of 1) 15% (CS15) or 2) 30% …

Fishing And Rural Livelihood: A Philippine Context, Rosalina Palanca-Tan, Sheila Bongat-Bayog

Economics Department Faculty Publications

The Municipality of Lake Sebu in Mindanao; Philippines offers various opportunities for income-generating fishing activities with its abundant surface water bodies. Lake Sebu is particularly known for good quality tilapia; farmed in fish cages. This study employed primary data collection methods; namely key informant interview; focus group discussion and a comprehensive livelihood household survey to assess the conditions and problems constraining fishing households in Lake Sebu. The study found that fishing-related benefits were mainly derived from aquaculture. Capture fisheries are essentially very small-scale; low gear open fishing done by local fisher folk that generates only subsistence income. Local residents are …

Evaluation Of Bacillus Subtilis Pb6 Probiotic (Clostat®500) On Feedlot Phase Growth Performance, Efficiency Of Dietary Net Energy Utilization, And Fecal And Subiliac Lymph Node Salmonella Prevalence In Spring Placement Yearling Beef Steers Fed In Southeastern South Dakota, Zachary K. Smith, P. Rand Broadway, Warren C. Rusche, Julie A. Walker, Keith R. Underwood, Jeri;Yn E. Hergenreder

SDSU Beef Day 2021 Summary Publication

Objective
The objective of this research was to determine the influence of Bacillus subtilis PB6 administration had on growth performance, carcass traits, and Salmonella prevalence in yearling steers placed on feed in March in southeastern South Dakota that were not subjected to marketing or environmental stressors during the finishing phase.
Study Description
Yearling crossbred beef steers (N = 238; initial shrunk BW = 886 ± 68.8 lbs) were used in a 140-d finishing study at the Southeast Research Farm (SERF) in Beresford, SD. Steers were allotted to one of 24 pens (N = 9 to 10 steers/pen) and assigned to …

Effects Of Harvest Maturity And/Or Kernel Processing On Corn Silage Processing Score And Particle Size Of Corn Silage, Thomas Hamilton, Julie Walker, Warren Rusche, Zachary Smith

SDSU Beef Day 2021 Summary Publication

Objective
A single corn hybrid was used to evaluate harvest maturity (Mat) and/or kernel processing (KP) effects on corn silage processing score (CSPS) and particle size (PS).
Study Description
Treatments were arranged in a 2 × 2 factorial of: 1) Mat (early and late) and 2) KP (no or yes). A single corn field was planted on April 27, 2020. There were 12 loads (experimental unit) per simple effect treatment mean. Data were analyzed as a completely randomized design. Early harvest (3/4 milk line) occurred on August 28, 2020 [yield (as is) = 17.40 tons/acre; DM = 43.1%; CP, NDF, …

Spatio-Temporal Variation Patterns Of Bird Community In The Oasis Ecosystem Of The North Of Algerian Sahara, Lasad Chiheb, Bensaci Ettayib, Nouidjem Yassine, Hadjab Ramzi

Journal of Bioresource Management

The spatial and temporal variation patterns of birds were investigated in the Oasis ecosystem of the North of Algeria Sahara. This contribution aimed to investigate the poorly studied bird fauna of Bousaâda oasis. The direct observation method was used for bird counts, adopted only during the breeding period. A total of 53 species of birds from 29 families and 16 orders were assessed in the different habitats of the Oasis (palm, fruit trees and, cultivated crops). The Passeriformes order was the most abundant represented by 35 species and 16 families. The relative abundance and species richness were recorded during our …

The Food Diversity And Choices Of Archachatina Marginata Raised In Concrete Trench Pens, Ebere Julein Okafor-Elenwo, Osarunmwense Precious Otote, Osazee Ekundayo Izevbuwa

Journal of Bioresource Management

Archachatina marginata is an economically useful gastropod, scientifically proven to be of huge benefit to human’s health and wellbeing. Food varieties of A. marginata hunted from the immediate environment of Ovia North East, South-South, Nigeria, were investigated to select the most appropriate, in terms of preferences and availability. The study was conducted for five months (May to August, 2020) during the rainy season. Ten snails were selected from the wild with weights ranging from 340.21g to 355.32g and heights of 11.8cm to 13.3cm at the point of collection. The snails were housed each, in an escape-proof trench pen, covered with …

Estimating The Effects Of Weather, Dry Matter Intake, And Body Weight On Daily Water Intake In Weaned Calves, Zach S. Mcdaniel, Himali Wickramasinghe, Cody L. Wright, Michael G. Gonda, Zachary K. Smith

SDSU Beef Day 2021 Summary Publication

Objective
The purpose of this study was to study the effect of weather, dry matter intake, and body weight on the water requirements of weaned calves and estimating the requirements in a model.
Study Description
Weaned steers (n=48) were selected to study the effects of the weather, body weight, and dry matter intake on water intake in the winter (n=24) and summer (n=24) months. Calves were provided with ad libitum access to feed and water at the SDSU Cow-Calf Education and Research Facility (CCERF) and measured utilizing an automated feed and water system (Insentec, The Hague, Netherlands). Temperature, humidity, precipitation, …

Virtual Feedlot Shortcourse: When Life Hands Out Lemons, Warren Rusche

SDSU Beef Day 2021 Summary Publication

Objective
The COVID-19 pandemic forced changes in how Extension programming was delivered in 2020. Web-based distance learning tools were used to deliver educational material when it was impractical to use traditional delivery methods. Study Description
The SDSU Extension Feedlot Shortcourse has traditionally been an in-person event with as much opportunity for hands-on learning and demonstrations as possible. The program is offered over a two-day period in August at the SDSU Cow-Calf Education and Research Facility with approximately 30 participants each year, on average. The program addresses feed delivery and mixing, animal health, production technologies, and risk management. However, the events …

North Central Farm And Ranch Stress Assistance Center: A Comprehensive Needs Assessment In South Dakota, Krista Ehlert, Andrea Bjornestad

SDSU Beef Day 2021 Summary Publication

Objective
The overall objective of this project is to work with mobilized partners to form the North Central Farm and Ranch Stress Assistance Center (NC FRSAC). The NC FRSAC will create and expand stress management and mental health resources and services to agricultural producers, advocates and stakeholders who support agricultural producers. This project is led by the University of Illinois Urbana-Champaign. South Dakota State University is one of the partners and our supporting objective is to establish a state-wide task force to develop an assistance network, conduct a comprehensive needs assessment, develop and implement educational workshops to producers and their …

Large-Scale Edna Metabarcoding Survey Reveals Marine Biogeographic Break And Transitions Over Tropical North-Western Australia, Katrina M. West, Michael J. Travers, Michael Stat, Euan S. Harvey, Zoe T. Richards, Joseph D. Dibattista, Stephen J. Newman, Alastair V. Harry, Craig L. Skepper, Matthew Heydenrych, Michael Bunce

Fisheries Research Articles

Environmental DNA (eDNA) metabarcoding has demonstrated its applicability as a highly sensitive biomonitoring tool across small spatial and temporal scales in marine ecosystems. However, it has rarely been tested across large spatial scales or biogeographical barriers. Here, we scale up marine eDNA metabarcoding, test its ability to detect a major marine biogeographic break and evaluate its use as a regional biomonitoring tool in Australia.

Developing Web Application Tools To Support Beef Cattle Production, Jameson Brennan, Krista Ehlert

SDSU Beef Day 2021 Summary Publication

Objective
The objective of this project was to demonstrate the development of web-based applications to help producers gather and utilize data to make more informed management decisions for their operation.

Predation Of Ananteris Spp. (Scorpiones: Buthidae) By Ants And A Social Wasp (Hymenoptera: Formicidae, Vespidae) In Panama, Central America, Roberto Miranda, Luis F. De Armas, Roberto A. Cambra

Euscorpius

Two events of predation on Ananteris spp. were observed in the Parque Nacional Darién, Darién Province, Panama. The first case involved the social wasp Agelaia centralis (Cameron, 1907) (Vespidae); the second one, a ponerine ant Leptogenys cf. cuneata Lattke, 2011 (Formicidae). This is the first time that predation by a social wasp on a scorpion is observed. They also represent the first recorded predators for Panamanian Ananteris species.

Vaccinating The Young Calf With A Parenteral Adjuvanted Vaccine To Develop A Protective Brsv Iga Nasal Response, Karim W. Abdelsalam, Elizabeth A. Kolb, Robin E. Buterbaugh, Carol L. Rinehart, Douglas Ensley, George A. Perry, Christopher C.L. Chase

SDSU Beef Day 2021 Summary Publication

Objective
The purpose of this study was to evaluate the efficacy of an adjuvanted modified live virus (MLV) vaccine in the presence of well-defined maternal passive immunity.
Study Description
Calves were vaccinated at approximately 1 month of age and challenged ~90 days later when BRSV systemic antibodies were less than 1:4. Clinical signs, nasal secretions and blood samples for virus measurement [polymerase chain reaction (PCR) and virus isolation (VI)] and to measure for mucosal BRSV IgA antibodies were collected and the animals were euthanized and necropsied 8 days post infection. Body temperature and other clinical signs were lower at 6 …

Fetilinia Dentator Gen. Et Sp. N. From Pakistan (Scorpiones: Buthidae), Graeme Lowe, František Kovařík

Euscorpius

We describe from northern Pakistan a new buthid genus Fetilinia gen. n., monotypic with type species F. dentator sp. n., belonging to the Palaearctic ‘Buthus’ group. It bears some similarities to Kraepelinia Vachon, 1974, in having enlarged metasomal dentition, and to Orthochirus Karsch, 1891, and related genera in having a trapezoidal carapace and small abbreviated pedipalps.

Interactions Of Change In Nutrition After Ai On Plasma Metabolites, Steroid Hormone Production, And Uterine Environment, Taylor N. Andrews, Kaitlin M. Epperson, Jerica J.J. Rich, Saulo Menegatti Zoca, Adalaide C. Kline, Lacey K. Quail, Abigail L. Zezeski, Thomas W. Geary, Julie A. Walker, George A. Perry

SDSU Beef Day 2021 Summary Publication

Objective
The objective was to evaluate the impact of nutritional changes post artificial insemination (AI) on plasma metabolites, steroid hormones, and uterine environment.
Study Description
Beef heifers (n = 43) were randomly assigned to two dietary treatment groups (High = 161.5% or Low = 77.5% of maintenance energy) for 14 d after AI (post-AI). Post-AI dietary treatments continued until uteri were flushed for embryo recovery (d 14 post-AI). Blood samples were collected on d -3, 0 (day of AI), 3, 6, 9, 12, and 14 for analysis of plasma glucose, proteins, non-esterified fatty acids (NEFAs), and cholesterol using colorimetric assays. …

Use Of Pregnancy Associated Glycoproteins To Determine Fetal Age Throughout Gestation In Cattle, Adalaide C. Kline, Kaitlin M. Epperson, Jerica J.J. Rich, Saulo Menegatti Zoca, Taylor N. Andrews, Lacey K. Quail, Jim R. Rhoades, George A. Perry

SDSU Beef Day 2021 Summary Publication

Objective
The objective of the current study was to determine if a commercially available blood pregnancy test could be modified to detect differences in pregnancy-associated glycoprotein (PAG) concentrations to indicate stage of pregnancy or fetal age in cattle.
Study Description
Previously identified pregnant females were grouped by age (pre-primiparous or multiparous). Blood samples were collected between day 27 and 190 of pregnancy (n = 176 from pre-primiparous and n = 240 from multiparous) and serum was tested in duplicate using a commercially available blood pregnancy test, IDEXX Alertys Pregnancy Test. Procedures were adapted to allow concentrations to fall within the …

Longitudinal Assessment Of The Bovine Ocular Bacterial Community Dynamics In Calves, Alison Bartenslager, Nirosh D. Aluthge, John Dustin Loy

Department of Animal Science: Faculty Publications

Background: Infectious Bovine Keratoconjunctivitis (IBK), commonly known as pinkeye, is one of the most significant diseases of beef cattle. As such, IBK costs the US beef industry at least 150 million annually. However, strategies to prevent IBK are limited, with most cases resulting in treatment with antibiotics once the disease has developed. Longitudinal studies evaluating establishment of the ocular microbiota may identify critical risk periods for IBK outbreaks or changes in the microbiota that may predispose animals to IBK.

Results: In an attempt to characterize the establishment and colonization patterns of the bovine ocular microbiota, we conducted a longitudinal study …

The Presence Of Persistent Bovine Viral Diarrhea Virus Infection And A Novel Bosavirus In A Bison Herd, Ben M. Hause, Julia F. Ridpath, Angela E. Pillatzki, Tom Bragg, Christopher C.L. Chase

SDSU Beef Day 2021 Summary Publication

Objective
Bovine viral diarrhea virus (BVDV) is a significant pathogen of cattle, leading to losses due to reproductive failure, respiratory disease and immune dysregulation. An investigation was conducted in an American bison (Bison bison) herd dealing with reproductive issues in 2018-2019 calving season to determine likely cause of the losses.