Animal Sciences Commons^™

Wake-On-Anomaly Federated Architecture For Privacy-Preserving Poultry Health Early Warning, Mahmoud Aziz Louati

Masters Theses

Highly pathogenic avian influenza outbreaks, respiratory disease, heat stress, and silent equipment failures share one operational reality: they are detected too late because today’s poultry-health workflow is reactive, manual, and dependent on producers volunteering commercially sensitive data. This thesis presents a wake-on-anomaly federated architecture that addresses both the detection-latency problem and the privacy–adoption deadlock that has so far prevented cross-farm collaboration. The architecture is organized in two tiers. Tier 1 is a lightweight LSTM autoencoder that continuously screens four routine telemetry channels (water, feed, house temperature, activity proxy) and emits a per-window reconstruction-error score. A debounced k-of-m trigger with cooldown …

Silent Invaders: Stopping The Spread Of The Spotted Lanternfly, Sloane Z. Hall

Masters Theses

The Spotted Lanternfly, an invasive insect originating from China, has rapidly spread across the United States, harming agriculture, forestry, and surrounding ecosystems. It’s destructive feeding behavior severely impacts grapevines, fruit trees, and hardwoods, which directly affects wine production, farm communities, and local environments. The aim of this research was to investigate the biological, ecological, and economic stakes of the infestation, as well as the methods currently used to monitor and control its spread. Specifically, it examines how communication frameworks, design practices, and extension approaches influence producers’ adoption of recommended Integrated Pest Management (IPM) protocols. Through the research, a literature review, …

If You Build It, Will They Stay? Fish Communities Continue To Utilize Restored Habitat A Decade Following An Instream Restoration, Alexis L. Vandenberg

Masters Theses

Lotic ecosystems are degraded at an alarming rate due to anthropogenic activities. In order to combat these changes, stream restorations are implemented to improve conditions such as water quality, habitat heterogeneity, and bank stability. However, the impacts of these restorations are often understudied and long-term impacts are unknown. Restorations are typically designed to be ‘fish attractors’; this idea is known as the ‘Field of Dreams hypothesis’ – ‘if you build it, they will come’. This study uses data collected in Kickapoo Creek, Coles County from 2009 to 2015 and again in 2021 and 2022 to assess the long-term impacts of …

Compositional And Functional Shifts In Fish Community Structure In Response To Low-Head Dam Removals, Joshua D. Bruegge

Masters Theses

Low-head dams serve as intermittent barriers to aquatic connectivity and directly alter both upstream and downstream habitats and biotic communities. In 2018 and 2019, two low-head dams in the Vermilion River watershed of eastern Illinois were removed, reconnecting over 1,700 kilometers of upstream habitat within the basin. To determine the impacts of these dam removals, fish community surveys were conducted at 12 fixed sites across three reaches in two rivers from 2012-2022. This study assessed reach-specific temporal responses of the fish community and habitat characteristics. I linked trait expressions within the fish community to abiotic variables using the co-inertia RLQ …

Ecospiritual Entanglement, Ali Vedad Yüner

Masters Theses

Land breeds culture. It gives us the resources to thrive, and in that process we establish a relationship with its constituents. With a multitude of beings inhabiting the land, a complex web of relationships develop. Biology describes these relationships as food webs; the mass entanglement of organisms in a manner that each organism nourishes the other. These webs are not just mere scientific structures but rather an interpretation of existential connections that every organism in the world, humans included, are indebted to. Food webs are the first stepping stone in the formation of culture, as they account for the engagement …

Field Journal: The Excluded Middle, Carrie E. Kouts

Masters Theses

What does it look like to engage with organisms and landscapes at the periphery of anthropocentric value structures? How does one break the internalized myth that the “built” environment is excluded from the natural world? When does a hyper-mobile and hyper-commodified society confront the exponential crisis of animal death? Within this series of journal entries, field notes, collection observations, weird prose, and sensory musings, one will find questions on the nature of being human and the complex narratives of care we encounter in a world shared with more-than-humans. Each handwritten vignette and photograph from daily life weaves a non-linear and …

More Than 9 Lives: Improving Shelter Cat Intake And Adoption Rates, Arthur S. Loomis

Masters Theses

Municipal animal shelters across the United States struggle to properly care for the cats housed in their facilities due to overpopulation. The sheer volume of cats entering shelters greatly outpaces the rate in which they are adopted out, resulting in an immense resource strain that too often results in the euthanasia of millions of shelter cats across the country each year. The enormous influx of cats is largely due to abandonment or considerable populations of feral, stray, or community cats living on the streets. In addition, shelter cat adoptions occur at a much slower pace, with many cats spending months, …

Habitat Use And Selection Of Silver Carp In The Lower Wabash River System, Coy B. Blair

Masters Theses

The spatial ecology of non-native species in invaded systems remains relatively poorly understood despite the importance of suitable habitat in the success of invasion. Silver Carp Hypophthalmichthys molitrix are a highly invasive non-native species with established populations throughout the Midwestern United States. Much research has focused on habitat use of bigheaded carp in large river systems, though invasion risk remains high in smaller systems, such as tributaries of the Great Lakes and the Ohio River. The Wabash River, a unique system in the Midwest, remains largely un-impounded and is comparable to many of the smaller riverine systems at risk of …

Spatiotemporal Variability In Invasive Carp Spawning Activity In Two Midwestern River Basins, Braden A. Whisler

Masters Theses

Across the United States, fisheries managers and agencies continue to battle the spread of invasive bigheaded carp (Hypophthalmichthys spp.). Although previous research has identified environmental parameters such as temperature and flow to be triggers of spawning activity, many of these studies focus on larger rivers, rarely focusing on the specific thresholds or timing of when a spawning event takes place. I utilized the differing hydrology of the Illinois and Wabash Rivers and their tributaries to examine the differences in environmental parameters needed to trigger bigheaded carp reproduction. Three mainstem sites and three tributaries of both basins were sampled …

Evaluation Of Blue Catfish Populations In Four Midwestern Power Cooling Reservoirs, Tyler Joseph Murray

Masters Theses

Blue Catfish (Ictalurus furcatus) are the largest catfish in North America and as such angler desire for trophy fisheries have grown in addition to harvest fisheries. The Illinois Department of Natural Resources (IDNR) has stocked Blue Catfish into several reservoirs in the state including four that have powerplants that utilize the water for cooling and discharge it back into the reservoir at increased temperatures. This study explored the potential impacts of these warm water effluents on Blue Catfish population demographics, as well as whether management changes need to be implemented in these systems. I sampled Powerton, LaSalle, Springfield, …

Native Freshwater Mussel Communities In The Lower Grand River, Michigan: Assessing Tributary Confluence Effects And Updating Survey Information, Grayson L. Kosak

Masters Theses

Freshwater mussels (Unionidae) are ecosystem engineers and keystone species vital to stream ecosystems yet represent the most imperiled group of freshwater fauna. Conservation of unionids necessitates further understanding how assemblages interact with watershed features. This study investigates mussel occupancy, distribution, and assemblage structure upstream and downstream of tributary confluences in the lower Grand River, Michigan, alongside updated surveys of the unionid community with comparisons to previous assessments conducted by Michigan Natural Features Inventory (MNFI) in 2002–2003. Unionid density, richness, and diversity were greater upstream of confluences. No significant distance-gradient effects were observed. Assemblage structure differed between upstream and downstream reaches …

Operation Shark: Addressing The Negative Portrayal Of Sharks In Media, Michael R. O'Shea

Masters Theses

Sharks are some of the most well adapted and effective animals in the animal kingdom. Unfortunately, they are also some of the most feared. For many people the word shark evokes images of vicious attacks like those seen in movies such as Jaws. Sharks have also been negatively portrayed in the media. This negative portrayal of sharks has led to misconceptions about sharks that have damaged their populations. Efforts have been made to raise awareness and fight common misconceptions of sharks. However, many people still hold on to the incorrect ideas they have about sharks. This thesis will examine the …

Habitat Suitability For Age-0 Lake Sturgeon In The Grand River, Benjamin D. Gunnett

Masters Theses

Lake sturgeon (Acipenser fulvescens) are a state-threatened species in Michigan and have become a focus for conservation. The lower Grand River is home to a remnant population of lake sturgeon between the 6th Street dam in downtown Grand Rapids and Lake Michigan. There has been limited research on age-0 lake sturgeon habitat use in low-gradient and more turbid rivers. To address this deficit, we developed a Habitat Suitability Index (HSI) for age-0 lake sturgeon based on prior literature in the Great Lakes. A HSI combines parameters representing in-stream habitat characteristics to score habitat suitability on a scale of 0-1, 0 …

Estimating Daily Growth Of Age-0 Channel Catfish In A Free-Flowing, Commercially Exploited Midwestern River, Kaleb B. Wood

Masters Theses

The larval stage in fishes is an important stage in the life history, as their survival dictates the ability of the population to sustain itself as an adult population. While there is a plethora of information available for juvenile and adult life stages of Channel Catfish (Ictalurus punctatus), very little is understood about their larval life stage. This study sought to determine overall density, growth rates, and size structure of cohorts of age-0 Channel Catfish during a study year on the Wabash River. In 2018, I sampled age-0 Channel Catfish using a benthic trawl from May to September. …

Using Community Science To Monitor Eastern Box Turtles And Engage Public In Conservation, Sarah Zoppa

Masters Theses

The eastern box turtle (Terrapene carolina carolina; EBT) is a charismatic species with populations in decline due to habitat loss, disease, and other anthropogenic factors. However, due to their cryptic nature, studying an EBT population can be a difficult and intensive process. To investigate EBT populations in Coles County, Illinois, we used a combination of community science and computer-based pattern analysis to develop an approach to tracking individual turtles. Citizen volunteers submitted photos of encountered eastern box turtle carapaces for shell pattern analysis along with GPS coordinates of the encounter. We have received 220 submissions from 47 community volunteers. …

Nocturnal Behavior Of Communally Roosting American Crows (Corvus Brachyrhynchos), Caitlin M. Mrowiec

Masters Theses

During the winter months in Charleston, Illinois, thousands of American crows (Corvus brachyrhynchos) gather together each night to roost. While aspects of this impressive sight have been studied elsewhere, there is very limited information on how crows behave at night. Additionally, the mechanics and origins of communal roosting are not especially well understood, and the behaviors involved are not always consistently described. This study sought to provide a more complete assessment of crow communal roosting after sunset. I collected data between 2018 and 2020 by locating communal roosts and conducting continuous observations for 4 hours after sunset, with additional checks …

High Prevalence Of Trypanosoma Cruzi Infection In Raccoons (Procyon Lotor) And Associated Risk To Humans In Central Illinois, Esther Onuselogu

Masters Theses

Chagas disease, caused by the protozoan parasite Trypanosoma cruzi, remains a neglected tropical disease and a growing health threat in the United States. Raccoons (Procyon lotor) often coexist with humans in urban and suburban areas and serve as reservoir hosts for T. cruzi. While T. cruzi is rare in humans and domestic animals in the U.S., it is common in wildlife species, particularly raccoons and Virginia opossums (Didelphis virginiana). This study aimed to assess the prevalence of T. cruzi infection in the raccoon population of Central Illinois and evaluate the risk of transmission to humans. …

Population Demographics Of Channel Catfish In The Lower Wabash River, Valerie J. Thompson

Masters Theses

Inland fisheries are experiencing increasing demands due to anthropogenic stressors, especially within large river systems that support both recreational and commercial fisheries. Riverine species are sensitive to habitat degradation, species introductions, and exploitation, so continued monitoring and management of these communities are vital to maintain abundance and diversity within these systems. The North American catfish family, Ictaluridae, supports both recreational and commercial fisheries throughout the United States. Channel Catfish Ictalurus punctatus are heavily studied and managed compared to other sport catfishes in this family because of their economic and ecological significance. One important Channel Catfish fishery exists in the lower …

Acute And Chronic Impacts Of A Biofilm, Activated Sludge, And Ultraviolet Radiation Treatment On The Fathead Minnow, Pimephales Promelas, Julia Fitch

Masters Theses

Wastewater treatment plants (WWTPs) are a point source of pollution that have potentially damaging effects on downstream fish populations, including reduced growth and survival and reproductive complications. To examine these possible effects, fathead minnows were exposed to effluent of three wastewater treatment processes at the Charleston Wastewater Treatment Plant located in Charleston, Illinois. These three treatments included two secondary treatments, a biofilm treatment and an activated sludge treatment, and one tertiary U.V. treatment. Two trials took place during this project: an acute, two-week exposure trial, and a chronic 119 day exposure trial. Upon completion of each trial, fish were assessed …

Molecular Investigation Of Tick-Borne Pathogens In Feral Swine (Sus Scrofa) From Seven Us States, Sofiane Aiche

Masters Theses

Feral swine (Sus scrofa) have been proposed as part of the lifecycles of multiple tickborne pathogens (TBP). This is a result of the increase in feral swine populations and increased tick populations and geographic ranges. Few surveys exist on the TBP relevant to human and wildlife of feral swine in the US. The aim of this study is to investigate the prevalence of 10 TBP: Anaplasma spp., Borrelia spp., Cytauxzoon felis, Hepatozoon spp., Babesia spp., Mycoplasma spp., Trypanosoma cruzi, Toxoplasma gondii, Yersinia pestis, and Rickettsia spp. A total of 87 feral swine blood samples …

Go Big Or Go Home: Divergence In Morphology And Behavior Between Island And Islet Populations Of The San Cristóbal Lava Lizard (Microlophus Bivittatus), Emilio J. Mancero

Masters Theses

Rapid divergence in body size is a well-documented phenomenon among island species, associated with macroevolutionary processes of diversification and adaptive radiation. The effect of insularity in determining larger body size as an optimal phenotype is primarily attributed to lower predation and greater intraspecific competition on islands. Our study examined interpopulation variation in morphology, social behavior and predator avoidance in Galápagos lava lizards endemic to San Cristóbal island (Microlophus bivittatus), and the nearby islet Isla Lobos. Islet populations have fewer competitors than those on the island, where native and introduced predators are abundant. We simulated interactions with predators and …

Consistency Is Key: Investigating Vocal Consistency In Field Sparrows, Stephanie Stanton

Masters Theses

No abstract provided.

Serotonin And Its Effects On The Chronic Stress Response In Crayfish Following Nonylphenol Exposure, Tara M. Olen

Masters Theses

Current research suggests that stress in both vertebrates and invertebrates is modulated in part by the neurotransmitter serotonin. It has been shown that crayfish can function as a good neurophysiological model, as they have less complex neurological systems than vertebrates, so mechanistic causes for stress can be more readily studied and understood. One potential stressor for aquatic species such as crayfish would be nonylphenol, a hydrophobic chemical used in agricultural products that can make its way into the water supply due to agricultural runoff. Nonylphenol can lead to physiological and behavioral impairments in crayfish and these impairments likely induce stress …

Summer Movement Of Burbot (Lota Lota) In An Isolated Michigan River And Pre-Restoration Assessment Of The Grand River Fish Assemblage In Downtown Grand Rapids, Michigan, Usa, Alexis Neff

Masters Theses

This thesis research consisted of two complimentary projects. The first focused on understanding the ecology and life-history of an isolated population of a freshwater fish, the Burbot; the second on a pre-restoration assessment of the fish community in the Grand River.

Understanding life-history strategies of species is important to recognize changes in behavior caused by anthropogenic effects. Burbot (Lota lota), are important apex predators in their native range, is understudied, and exhibits complex life-history strategies. Specifically, little research has been done on isolated river populations. My research objective was to assess Burbot movement and habitat use over a …

Avian Community Response To Oak Savanna Management In West Michigan, Abigail Elaine Fischer, Paul W. Keenlance, Alexandra B. Locher, Joseph J. Jacquot

Masters Theses

In the midwestern United States, oak savanna ecosystems have experienced steep declines over the past century due to loss of disturbances and changes in land use. This loss coincides with the decline in avian communities across North American and has negatively impacted taxa that associate with open vegetation cover types. Expanding efforts to restore and manage oak savanna ecosystems has resulted in increased open habitat which has positively impacted these avian communities, resulting in increased species diversity. While numerous studies within the Midwest have observed similar results, there have been no studies in Michigan that have formally assessed the impact …

The Spatial Ecology And Habitat Selection Of A Spotted Turtle (Clemmys Guttata) Population In Southwest Michigan, Michela Coury

Masters Theses

Turtles are arguably the most threatened group of vertebrates on the planet. Anthropogenic influences such as habitat loss and fragmentation, road mortality, subsidized predators, climate change, and illegal collection have contributed to their global decline. Understanding which isolated populations of turtles are viable despite these synergistic threats is crucial for making conservation and management decisions. In Michigan, the spotted turtle (Clemmys guttata) is a threatened species subjected to many negative anthropogenic influences that accelerate its rapid population decline. In order to properly sustain their populations, the goal of my research was to investigate relevant factors that help us …

Comparison Of Bigheaded Carp Reproduction In Tributaries Of The Illinois And Wabash Rivers, David J. Yff

Masters Theses

Understanding environmental conditions that support bigheaded carp (Hypophthalmichthys sp.) reproduction in tributary rivers provides key predictions of their invasion throughout the United States. Past research, primarily in larger order rivers, identified factors such as discharge, temperature, and turbidity as main environmental drivers of bigheaded carp reproduction. I used the variable hydrologic conditions between the Illinois and Wabash Rivers to compare environmental conditions between tributaries of each basin, determine which conditions influence bigheaded carp reproduction in tributaries, and predict tributaries likely to support bigheaded carp reproduction. Three tributaries of the Illinois and Wabash Rivers were sampled for ichthyoplankton from …

Differences In The Growth And Bioenergetics Between Centrarchids In A Midwestern Power Plant Lake, Kyle Joseph Rempe

Masters Theses

Black Crappie Pomoxis nigromaculatus and Bluegill Lepomis macrochirus are popular sportfishes that co-occur in similar bodies of water throughout most of the Central and Eastern United States but have distinct thermal physiologies. L. macrochirus is often found in warmer regions of freshwater reservoirs, where P. nigromaculatus tends to exploit cooler regions, especially in power plant cooling reservoirs. The coal-fired Coffeen Power Station ceased energy production in October 2019, providing an ideal scenario to study the organismal effects of the sudden shift in thermal regime. Previous studies showed that P. nigromaculatus inhabited the less thermally-impacted areas of Coffeen Lake, whereas L. …

Assessing The Short-Term Effects Of Translocation On Freshwater Mussels: Is Habitat Or Water Quality More Important?, Joshua D. Arnold

Masters Theses

Freshwater mussels (Order: Unionida) are very important to the function of aquatic ecosystems and are typically indicators of good water quality. They provide a valuable link between the water column and the benthic substrate in which they live and are a valuable food resource for many species of animals. However, most species native to North America are currently threatened with extinction, to the point that more than 70% of native freshwater mussels are listed as either threatened or endangered at the state or federal level. The cause of this decline can be attributed to historical over exploitation, habitat alteration, and …

Evaluation Of Lake Sturgeon (Acipenser Fulvescens) Spawning Success On An Artificial Reef Constructed In The Kalamazoo River, Michigan, Jason P. Lorenz

Masters Theses

Since lake sturgeon Acipenser fulvescens monitoring began on the Kalamazoo River in 2009, there has been no documentation of survival past the egg stage. Spawning has occurred directly below Calkins Dam and, in 2016, an artificial spawning reef was constructed 275-m downstream to improve habitat and increase survival to the larval stage. The site was monitored with egg mats and larval drift nets to document evidence of successful natural reproduction of lake sturgeon one year prior to construction (2016) and three years post-construction of the artificial reef (2017-2019). Fertilized lake sturgeon eggs were captured all four years of the study …