Animal Sciences Commons^™

Compositional And Functional Shifts In Fish Community Structure In Response To Low-Head Dam Removals, Joshua D. Bruegge

Masters Theses

Low-head dams serve as intermittent barriers to aquatic connectivity and directly alter both upstream and downstream habitats and biotic communities. In 2018 and 2019, two low-head dams in the Vermilion River watershed of eastern Illinois were removed, reconnecting over 1,700 kilometers of upstream habitat within the basin. To determine the impacts of these dam removals, fish community surveys were conducted at 12 fixed sites across three reaches in two rivers from 2012-2022. This study assessed reach-specific temporal responses of the fish community and habitat characteristics. I linked trait expressions within the fish community to abiotic variables using the co-inertia RLQ …

Optimization Of Feed Manufacturing Productive Capacity, Feed Quality, And Feed Safety Utilizing A Variety Of Pellet Die Parameters, Feed Additives, Conditioning Specifications, And Simulated Feed Bin Storages, Lucas Edward Knarr

Graduate Theses, Dissertations, and Problem Reports (ETD)

In Chapter 2, an experiment was conducted to determine if the inclusion of 1.50% mixer-added water (MAW) and/or 0.25% Azomite^® (AZM) would be suitable in alleviating concerns regarding pellet production rate and pellet quality when manufacturing feed with low-moisture corn. Furthermore, the authors aimed to determine if these additives had varying effects when utilizing different pellet die thicknesses. A 2 (Azomite; 0.00% or 0.25%) x 2 (mixer-added water; 0.00% or 1.50%) x 3 (pellet die thickness; 32 mm, 38 mm, or 45 mm) factorial arrangement was utilized to create the twelve experimental treatments, each manufactured …

Impact Of Water Level Fluctuations On Fish Populations In Eastern South Dakota Rivers, Benjamin Schall

Electronic Theses and Dissertations

Riverine systems are highly dynamic, and changes in flow conditions can impact the population dynamics of fishes. Increased flows from historical averages in eastern South Dakota rivers have likely impacted fish populations. The goals of this study were to 1) better understand the changes in resource use by Blue Suckers Cycleptus elongatus through retrospective eye lens stable isotope analysis, 2) determine the effects of record flooding in the James River on complex woody habitat and Flathead Catfish Pylodictis olivaris population structure, and 3) assess the influence of river discharge and temperature on Channel Catfish Ictalurus punctatus and Flathead Catfish condition …

Notes On The Ichthyofauna Associated With Artisanal Fishing In A Severely Impacted Estuary In The Southwestern Gulf Of Mexico During The Rainy Season, Rodrigo Vivanco-Cadena, César Meiners-Mandujano, Roberto Martín Cruz-Castán

Gulf and Caribbean Research

No abstract provided.

Manatee Dock Sign Distribution And Its Influence On Publicly-Sourced Sighting Reports In Alabama, Daniela Payán Arias, Sophia C. Corde, Ruth H. Carmichael

Gulf and Caribbean Research

No abstract provided.

Dietary Ecology Of Waterfowl Nest Predators In The Prairie Pothole Region: Evaluating Resource Use From Species To Individual Using Stable Isotope Analysis, Grace Barthelmess

EWU Masters Thesis Collection

Nest predation is a primary factor influencing waterfowl productivity in the Prairie Pothole Region (PPR) of North America. Although this system is intensely managed and studied, research has largely focused on how predators affect waterfowl populations, with comparatively little attention to how predators actually rely on waterfowl as a resource. Understanding predator feeding ecology is therefore critical for informing effective management strategies and interpreting the complexity of predator-prey interactions on this landscape. My objective overall was to elucidate the feeding ecology of nine focal predator species commonly associated with waterfowl nest predation in the Aspen Parkland Ecoregion of the PPR: …

Multi-Omics Analysis Of Immune-Metabolic Adaptation To Direct-Fed Microbial Supplementation In Newly Weaned Beef Steers, Adekunle Odunayo Ajiboye

Graduate Theses, Dissertations, and Problem Reports (ETD)

Immune and metabolic disruption during weaning represents a major challenge to health and productivity in beef cattle. This dissertation tested the hypothesis that supplementation with multi-strain direct-fed microbials (DFMs) modulates immune regulation and metabolic pathways associated with adaptation to weaning stress. To address this, whole-blood transcriptomics and plasma metabolomics were used to evaluate molecular and metabolic responses in newly weaned beef steers during the receiving period. Transcriptomic analysis identified differential expressions of genes associated with immune signaling and inflammatory regulation, indicating modulation of immune-related pathways without changes in growth performance. Metabolomic analysis revealed alterations in circulating metabolites related to amino …

Microbial Mats In Dinosaur Ichnocoenoses, Nora Noffke, Paul C. Murphy, Roger C. Buntin, Martin G. Lockley

OES Faculty Publications

Until now, the significance of microbial mats in preservation of dinosaur tracks and in reconstructing the palaeoenvironment in which dinosaurs roamed was rarely studied. Dinosaur tracks are commonly found close to ancient aquatic bodies where moist sediment had once allowed footstep registration. At such sites, epibenthic or endobenthic microbial mats may have developed as well and may have led to exquisite track preservation. Microbial mats in coastal, lacustrine or flood plain environments cause 'microbially induced sedimentary structures—MISS', which are micobialites found in sandy or evaporitic settings. The microbial structures record environmental parameters including meteorological conditions that existed at the time …

Effect Of Substrate Dispersion Method And Particle Size On In Vitro Digestibility, Gas Production Kinetics And Composition, And Fermentation Characteristics In Different Feed Types, Luiz C. O. Sousa, Ellem M. A. Matos, Ronald J. Trotta, Edenio Detmann, David L. Harmon

Animal and Food Sciences Faculty Publications

Our objective was to evaluate the influence of substrate dispersion method and particle size on in vitro digestibility, gas production kinetics and composition, and fermentation characteristics of different feed types. Alfalfa hay, tall fescue hay, ground corn, soybean meal, and a total mixed ration (TMR) were used as substrates. Treatments were designed according to a 2 × 2 × 5 factorial arrangement: two substrate dispersion methods (loose substrate and in filter bags), two particle sizes (1 mm and 2 mm), and five feeds. Filter bags decreased (P ≤ 0.001) digestibility and gas production compared with loose samples. Filter bags decreased …

Automation And Habitat Development For A Space Based Marine Life Environment, Logan Trimmer, Alexander Hang

Harrisburg University Other Works

This project was a cross-collaboration between the Environmental Sciences and Advanced Manufacturing and Robotics programs for the company Monolith Space.

The goal of this project was to design an autonomous system to be able to track qualities of water in an aquaculture system designed to be sent to space.

The Conservation Value Of Silvicultural Systems For Breeding And Post-Fledging Bird Communities In Northeastern North America, Christopher Andrew Liazos

Antioch University Dissertations & Theses

Forest bird community decline in the eastern United States is partly due to the lack of early-and-late-successional forests stemming from historic land use. Silviculture can create underrepresented forest age classes and structures to support avian communities during the breeding and post-fledging periods. In southwestern New Hampshire, we conducted a case study evaluating avian conservation value indices across silvicultural systems. Our goal was to observe how avian conservation value indexes and abundance differed between recently managed and unmanaged stands. We surveyed 215 breeding and 118 post-fledging points across 22 sites using point counts and vegetation surveys. Conservation values in the breeding …

Comparison Of Enrichment Interaction Duration Between Male And Female Panthera Leo Leo, Maegen G. Meldrum

Undergraduate Honors Thesis Projects

African lion (Panthera leo leo) populations have declined significantly over the past century within their natural habitats, increasing the importance of effective management strategies for individuals in human care. Environment enrichment is a critical tool for promoting species typical behavior in human care; however, enrichment practices are often generalized and may not account for sex-specific differences. This study examined how sex, enrichment types, behaviors, and time of day influenced enrichment interaction duration in a small pride of African lions (n = 4) housed at the Columbus Zoo and Aquarium. Two enrichment types were evaluated: cognitive/occupational (CO, a manipulable barrel) …

Challenging And Diagnosing Structured Population Models By Testing Predictions From Stochastic Demography, Stephen P. Ellner, Robin E. Snyder, Daniel T. Blumstein, Dylan Z. Childs, Joshua C. Fowler, Christina M. Hernández, Julien G. A. Martin, María Paniw, Yngvild Vindenes

Biological Sciences Faculty Publications

1. Structured population models are parameterized to accurately project expected population sizes, stage/state distributions and population growth rates, but they also predict the variation in outcomes among individuals, such as the variance and skewness of lifetime reproductive output (LRO) and lifespan, the probability of never reproducing, and many other life-history metrics.

2. Testing such predictions about individual outcomes can be very useful model 'stress tests', because they depend on how components of the model (e.g. submodels for survival and fecundity) interact over multiple time steps, not just on the accuracy of the submodels. Because data on among-individual variation is rarely …

Terrestrial Gartersnake (Thamnophis Elegans) Consuming A Western Meadow Vole (Microtus Drummondii) In The Sangre De Cristo Mountains Of New Mexico, Joseph W. Paysen, Peggy M. Huss, Jacob C. Cooper, Lance J. Bernal, Carter Kruse, Keith Geluso

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

The Terrestrial Gartersnake (Thamnophis elegans) is a dietary generalist occurring in the western half of the United States, southwestern Canada, and northern Mexico. Terrestrial Gartersnakes are known to consume a variety of small mammals, including voles (Microtus). Herein we report on an observation of the Terrestrial Gartersnake consuming a Western Meadow Vole (Microtus drummondii). On 27 June 2025, we captured a large adult Terrestrial Gartersnake underneath a log just upstream of a North American Beaver (Castor canadensis) dam on the Vermejo River, Colfax County, New Mexico that regurgitated a partially digested adult …

Impact Of Chilling, Freezing, And Repeated Freeze–Thaw Cycles On Physical Quality Of Buffen, Chevon, And Chicken Meat, Tarique Ahmed Khokhar, Atta Hussain Shah, Muneer Ahmed Jamali, Asghar Ali Kamboh, Faiz Muhammad Khand, Muhammad Awais Soomro, Zafar Ali Khoso, Muhammad Mohsen Rahimoon

Journal of Bioresource Management

Chilling, freezing, and repeated freeze–thaw cycles are common meat preservation methods; however, they can alter key physicochemical properties. Comparative data across different species under standardized conditions are limited. To compare the effects of chilled storage, frozen storage, and repeated freeze–thaw cycles on pH, water-holding capacity (WHC), thaw loss, cooking loss, and drip loss in buffen (buffalo), chevon (goat), and chicken meat. Longissimus dorsi muscles from buffalo and goat, and breast meat from broiler chickens, were stored under chilled (2–4 °C), frozen (–10 to –12 °C), or repeated freeze–thaw conditions. "Measurements were performed at defined intervals of chilling, freezing and freeze …

Water Quality And Plankton Diversity Of Ahi River, Ohiya, Umuahia, Nigeria, Emeka Donald Anyanwu, Egor Katkov, Udeme Effiong Jonah, Amarachuku Ezinne Oji, Immaculate Chiamaka Enwereuzo

Journal of Bioresource Management

The plankton diversity of large and urban rivers has been extensively studied in Nigeria while small rural rivers that harbour rich aquatic biota receive little attention. The composition, abundance, and distribution of plankton of a rural river were assessed in relation to some physicochemical parameters. The study was carried out between May and October 2023 in 3 stations using standard methods. The physicochemical results were: temperature (25.2-27.0^oC), flow velocity (0.15-0.46 m/s), transparency (14.0-78.5cm), depth (51.0-105.0cm), pH (5.6-7.8), electrical conductivity (66.0-98.0 µS/cm), total dissolved solids (33.0-49.0 mg/l), turbidity (0.1-1.7 NTU), dissolved oxygen (3.2-6.4 mg/l), biochemical oxygen demand (1.0-2.7 mg/l), …

Comparative Transcriptomics Reveals Novel And Differential Long-Noncoding Rna Responses Underlying Interferon-Mediated Antiviral Regulation In Porcine Alveolar Macrophages, Jiuyi Li, Oluwaseun Adeyemi, Laura C. Miller, Yongming Sang

Food and Animal Sciences Faculty Research

Porcine reproductive and respiratory syndrome virus (PRRSV) is a major threat to the global swine industry. Long non-coding RNAs (lncRNAs) are emerging as crucial regulators of antiviral immunity, but their roles in porcine alveolar macrophages (PAMs)—the primary target of PRRSV—remain poorly characterized. This study presents a genome-wide analysis of lncRNA expression in PAMs stimulated with a PRRS modified live virus (MLV) vaccine and two type I interferons, IFN-α1 and IFN-ω5. Whole-transcriptome sequencing identified over 2000 differentially expressed lncRNAs, with IFN-ω5 inducing the most extensive transcriptional reprogramming. Weighted gene co-expression network analysis (WGCNA) revealed interferon-specific lncRNA-mRNA modules, and functional enrichment showed …

Isolation And Molecular Characterization Of Shiga Toxin Producing Genes Stx1and Stx2 From The Captive Migratory Birds Of Lahore, Romana Zulfiqar, Hamid Ullah, Bushra Nisar Khan, Muhammad Habib Ur Rehman, Hoor Ul Ain, Alishba Zaheer, Samrah Hussain, Aazba Naeem

Journal of Bioresource Management

A total of 240 cloacal and fecal swabs were collected from 25 avian species, including ducks, swans, geese, pheasants, guinea fowl, parrots, cranes, and crows. Samples were cultured on Sorbitol MacConkey Agar, and presumptive Escherichia coli isolates were confirmed using morphological, biochemical, and molecular methods. Shiga toxin–producing E. coli (STEC) was identified through PCR detection of stx1 and stx2 genes, followed by sequencing. Antibiotic susceptibility testing was performed using the Kirby–Bauer disc diffusion method against streptomycin, ceftriaxone, ciprofloxacin, azithromycin, and tetracycline. Only four STEC isolates were recovered, resulting in an overall prevalence of 1.66 % (4/240). Positive cases were detected …

The Assessment Of Soil Physico-Chemistry And Uptake Of Heavy Metals In Lumbricus Terrestris, Shahzad Anjum, Sidra Kanwal, Rana Manzoor Ahmad, Abdul Majid Khan, Muhammad Imran

Journal of Bioresource Management

Earthworms are considered ecosystem engineers, playing an essential role in soil fertility. Heavy metals are supposed to remain linked to soil for a very long time and can bio-accumulate swiftly in soil microbes, posing a severe threat to the environment. The current study was designed to investigate the bio-accumulation of heavy metals in Lumbricus terrestris and the impact of soil pH and texture on earthworm morphology and densities near industrial areas of the district of Okara, Punjab, Pakistan. The samples were collected from the locations of different industries using the quadrate method and analyzed for heavy metal accumulation by using …

Effects Of Replacing Antibiotics With Bacillus-Based Probiotics In The Diet Of Lactating Sows On Reproductive Performance, Feed Intake, Serum Immunoglobulin Levels, Milk Production, Oxidative Stress Markers, Fecal Short-Chain Fatty Acids, And Piglet Growth Performance, Chutikan Srisang, Tip-Apa Akkhaphan, Preechaphon Taechamaeteekul, Junpen Suwimonteerabutr, Rafa Boonprakob, Suparlark Nuntawan Na Ayudhya Dr, Lea Hübertz Birch Hansen Dr, Padet Tummaruk

The Thai Journal of Veterinary Medicine

This clinical trial investigated the effects of adding a Bacillus-based probiotic to the lactation diet of sows (without in-feed antibiotics) on maternal and piglet outcomes. A total of 109 Landrace × Yorkshire sows (parity 1–7) were assigned to either a control group (n = 61) or a treatment group (n = 48) receiving Bacillus subtilis – 541 and Bacillus amyloliquefaciens – 516. Piglets in the treatment group also received the probiotics via creep feed from day 3 until weaning. Blood samples were collected within 12 h after farrowing to assess serum immunoglobulins (IgG, IgA, and IgM) and malondialdehyde (MDA) …

Developing A Tool To Measure Resistance To Sustainable Food Choices: A Pilot Study In Ireland And The Netherlands, Kate Flanagan, Bart Sinteur, Patricia J. Bulsing, John M. Kearney

SURE Journal: Science Undergraduate Research Experience Journal

Consumer uptake of a sustainable diet is critical for addressing environmental challenges and promoting public health. Understanding why consumers resist adopting sustainable eating habits can inform targeted interventions and policies. This pilot study examines whether a newly developed scale can effectively detect consumer resistance to a sustainable diet. Currently, there is a lack of research on a tool to measure consumer resistance to a sustainable diet, highlighting the need for a reliable instrument.

The aim of this study is to develop a scale, based on existing literature, to measure consumer resistance to a sustainable diet. Additionally, the study aims to …

Editorial-Sure Journal Volume 7, Issue 2, Geraldine M. Dowling, Eva Campion, Sinead Loughran, Ariane Perez-Gavilan, Josephine Treacy

SURE Journal: Science Undergraduate Research Experience Journal

No abstract provided.

Will Technology Help Us Understand Animals?, Frances I. Sacks

Capstones

New technologies allow scientists to study animal communication like never before. Advanced surveillance devices ornament forests and oceans, recording animals over great stretches of distance and time. Artificial intelligence can absorb these enormous datasets, sorting tangled abstractions into coherent patterns. With a sufficiently robust library of analyzed data, some researchers believe that large language models will soon learn to translate whale communication systems.

https://docs.google.com/document/d/1ky6mPFjc-lNJFVK8CHebUa5zCSFUoMgkCB560pqxwfo/edit?tab=t.0

The Nesting Behavior And Habitat Selection Of Wood Thrushes, Amelia Browning, Alexandra Price

Student Scholar Symposium

Wood Thrushes (Hylocichla mustelina) are a species of concern in Tennessee due to many factors. Historically, their nests have been found in low-hanging branches at the edge of dense forest (Evans et al. 2020). In 2021, a Wood Thrush nest was found in Warner Parks, a 3100-acre urban park sixteen kilometers south of Nashville, TN nesting eighteen meters off the ground and thirty meters from an active trail. We wanted to learn if this unusual nest height was a common occurrence in an active area of Warner Parks or an anomaly. We decided to compare nesting behavior and habitats at …

6ppd-Quinone In Middle Tennessee Waters: Assessing Ecological Impact, Andrew Davis Todd, Raphael Marquise Chandler, Kerolos Gerges Basalos, Denise Lori Loewinger

Student Scholar Symposium

This poster presents the dangers of a toxic chemical used on car tires that is entering aquatic ecosystems and harming fish populations.

Measuring Welfare Of Wild Tarantulas During Field Surveys Using Heart Rate, Tim Angelo Artiaga Lopez, Becky Hansis-O'Neill, Aimee Dunlap Phd

Undergraduate Research Symposium

Tarantulas (Theraposidae) are predatory arachnids that can help control populations of herbivorous arthropods. We have been monitoring populations of the Missouri brown tarantula (Aphonopelma hentzi) in Missouri glades for three seasons and have questions about their welfare during these surveys. Unlike mammals, arthropods are not extensively researched and there are only a few known facts about measuring their welfare. Managing stress for wild animals during field surveys is important for reducing the potential negative impacts of research. In mammals, increased heart rate is positively correlated with negative stress and eustress. Using the same logic, we hypothesized that heart rate could …

Determination Of The Cecal Microbiota Profile Of Anadolu-T Broiler Breeder Chickens Using 16s Metagenomic Sequencing, Kürşat Teti̇k, İsmai̇l Özkan, Serpi̇l Kahya Demi̇rbi̇lek

Turkish Journal of Veterinary & Animal Sciences

The gut microbiota has significant effects on the performance, health status, and immune systems of chickens. The complex microbial community structure begins to form after chicks hatch with the intake of feed, water, and air into the digestive system. Disrupting the balance of this system can lead to the proliferation of pathogenic microorganisms. Until recently, studies on microbiota relied on traditional microbiological techniques that cultured only a small fraction of the microbial diversity. However, significant advancements in DNA sequencing and bioinformatics have enabled the identification of diverse bacterial populations in environmental samples. In this study, a total of 2000 broiler …

Parameter Optimization For Runs Of Homozygosity (Roh) Detection In The Pig Genome, Timofey Romanets, Anna Korobeynikova, Lyubov Getmantseva, Maria Kolosova, Elena Romanets, Ilona Bakoeva, Varvara Shevtsova, Anatoly Kolosov, Alexander Maksimov, Siroj Bakoev

Turkish Journal of Veterinary & Animal Sciences

The present study analyses the influence of various parameters on the accuracy and reliability of ROH identification procedures, as well as their relationship with inbreeding and genetic diversity in Duroc pig populations. The genotyping data of 70 Duroc pigs obtained using PorcineSNP80v1 chips were used, and the effects of LD pruning and ROH calling parameters were evaluated. It was found that the use of strict basic filters during the execution of the --homozyg command reduces the likelihood of false positives and contributes to the more accurate identification of ROH. The results show that LD pruning reduces the detection of random …

Differences In Lactation Curve Parameters And Milk Yield Responses Between Artificially Induced And Naturally Calved Cows Milked In An Automatic Milking System, Marcos Busanello

Turkish Journal of Veterinary & Animal Sciences

Despite advances in artificial induction of lactation (AIL) protocols, they do not perfectly mimic the hormonal patterns of natural pregnancy. Recent studies show improved milk yield (MY) responses; however, comparisons of lactation curve parameters between AIL and naturally calved (NC) cows often do not extend beyond 305 days in milk (DIM). Thus, this study aimed to compare MY responses and lactation curve parameters between AIL and NC cows milked in an automated milking system (AMS). Data from 38 Holstein cows (19 AIL and 19 NC) were analyzed, focusing on the 305 DIM period. Wood’s lactation curve model was used to …

Evaluation Of Blood-To-Fluid Gradient Of Glucose And Lactate As Biomarkers In The Early Diagnosis Of Septic Peritonitis In Dogs, Silpa Sn, Sujata Turkar, Neetu Saini, Sushma Chhabra, Kuldip Gupta, Gursimran Filia

Turkish Journal of Veterinary & Animal Sciences

Septic peritonitis is a serious, life-threatening condition with a high mortality rate. Accurate diagnosis is crucial for the survival of the affected animal. The present study analyzed the use of a blood-to-fluid gradient of glucose and lactate as a biomarker in the diagnosis of septic peritonitis. Thirteen dogs with septic peritonitis and nine dogs with aseptic peritonitis were included in this study. Blood-to-fluid glucose gradient was significantly high, and blood-to-fluid lactate gradient was significantly low in septic peritonitis compared with the aseptic peritonitis. A blood-to-fluid glucose gradient of ≥12 mg/dL showed 100% sensitivity and 55.6% specificity, whereas a blood-to-fluid lactate …