Animal Sciences Commons^™

Climate-Assisted Persistence Of Tropical Fish Vagrants In Temperate Marine Ecosystems, Laura Gajdzik, Thomas M. Decarlo, Adam Koziol, Mahsa Mousavi-Derazmahalleh, Megan Coghlan, Matthew W. Power, Michael Bunce, David Fairclough, Michael J. Travers, Glenn I. Moore, Joseph D. Dibattista

Fisheries Research Articles

Rising temperatures and extreme climate events are propelling tropical species into temperate marine ecosystems, but not all species can persist. Here, we used the heatwave-driven expatriation of tropical Black Rabbitfish (Siganus fuscescens) to the temperate environments of Western Australia to assess the ecological and evolutionary mechanisms that may entail their persistence. Population genomic assays for this rabbitfish indicated little genetic differentiation between tropical residents and vagrants to temperate environments due to high migration rates, which were likely enhanced by the marine heatwave. DNA metabarcoding revealed a diverse diet for this species based on phytoplankton and algae, as well …

Decoding The Equine Genome: Lessons From Encode, Sichong Peng, Jessica L. Petersen, Rebecca R. Bellone, Ted Kalbfleisch, N. B. Kingsley, Alexa Barber, Eleonora Cappelletti, Elena Giulotto, Carrie J. Finno

Department of Animal Science: Faculty Publications

The horse reference genome assemblies, EquCab2.0 and EquCab3.0, have enabled great advancements in the equine genomics field, from tools to novel discoveries. However, significant gaps of knowledge regarding genome function remain, hindering the study of complex traits in horses. In an effort to address these gaps and with inspiration from the Encyclopedia of DNA Elements (ENCODE) project, the equine Functional Annotation of Animal Genome (FAANG) initiative was proposed to bridge the gap between genome and gene expression, providing further insights into functional regulation within the horse genome. Three years after launching the initiative, the equine FAANG group has generated data …

Better Tired Than Lost: Turtle Ant Trail Networks Favor Coherence Over Short Edges, Arjun Chandrasekhar, James A. R. Marshall, Cortnea Austin, Saket Navlakha, Deborah M. Gordon

Student Published Works

Creating a routing backbone is a fundamental problem in both biology and engineering. The routing backbone of the trail networks of arboreal turtle ants (Cephalotes goniodontus) connects many nests and food sources using trail pheromone deposited by ants as they walk. Unlike species that forage on the ground, the trail networks of arboreal ants are constrained by the vegetation. We examined what objectives the trail networks meet by comparing the observed ant trail networks with networks of random, hypothetical trail networks in the same surrounding vegetation and with trails optimized for four objectives: minimizing path length, minimizing average …

Micrornas As Biomarkers For Early Diagnosis, Prognosis, And Therapeutic Targeting Of Ovarian Cancer, Yegane Mirahmadi, Reza Nabavi, Fourough Taheri, Mohammad Mahdi Samadian, Zari Naderi Ghale-Noie, Mahsa Farjami, Abbas Samadi-Khouzani, Meysam Yousefi, Sara Azhdari, Arash Salmaninejad, Amirhossein Sahebkar

Department of Animal Science: Faculty Publications

Ovarian cancer is the major cause of gynecologic cancer-related mortality. Regardless of outstanding advances, which have been made for improving the prognosis, diagnosis, and treatment of ovarian cancer, the majority of the patients will die of the disease. Late-stage diagnosis and the occurrence of recurrent cancer after treatment are the most important causes of the high mortality rate observed in ovarian cancer patients. Unraveling the molecular mechanisms involved in the pathogenesis of ovarian cancer may help find new biomarkers and therapeutic targets for ovarian cancer. MicroRNAs (miRNAs) are small noncoding RNAs that regulate gene expression, mostly at the posttranscriptional stage, …

Perches As Cooling Devices For Reducing Heat Stress In Caged Laying Hens: A Review, Jiaying Hu, Yijie Xiong

Department of Animal Science: Faculty Publications

Heat stress is one of the most detrimental environmental challenges affecting the biological process and the related production performance of farm animals, especially in poultry. Commercial laying hens have been bred (selected) for high egg production, resulting in increased sensitivity to heat stress due to breeding-linked metabolic heat production. In addition, laying hens are prone to heat stress due to their inadequate species-specific cooling mechanisms resulting in low heat tolerance. In addition, hens have no sweat glands and feathering covers almost their entire body to minimize body heat loss. The poultry industry and scientists are developing cooling methods to prevent …

Natterer In Neotropical Nematoda: Species Described By Rudolphi, Diesing, And Molin, Ricardo Guerrero

MANTER: Journal of Parasite Biodiversity

Between 1817 and 1835 Johann Natterer collected 1,729 samples of endoparasitic helminths in Brazil and southern Venezuela. Of the 323 names that were assigned to the collected nematode specimens, 163 are still valid and accepted species, 84 are still doubtful, and 76 must be rejected. In this work, each name is analyzed and correlated to the literature to clarify its taxonomic status.

The purpose of this review of the material collected by Natterer is to establish a complete list of all described species; their current status; and whether they are valid species, synonyms, or nomen nudum as well as to …

Profile Of Producers And Production Of Dry-Aged Beef In Brazil, Jonatã Henrique Rezende-De-Souza, Flavio Andre Bolini Cardello, Ana Paula Moraes De Paula, Felipe A. Ribeiro, Chase C. Calkins, Sérgio Bertelli Pflanzer

Department of Animal Science: Faculty Publications

No information is currently available on the profile of producers and production process of dry-aged beef in Brazil, to the best of the authors’ knowledge. We surveyed 37 Brazilian companies that were producing dry-aged beef in 2020 to investigate this market. The absolute and relative frequency of responses was calculated to obtain the sum, average, minimum, and maximum values. From the respondents, dry-aged beef was first produced in 2009, and most producers are located in big cities. Most respondents control and monitor chamber temperature; however, humidity and air velocity only are monitored. The aging period (mostly between 22 to 60 …

Importance Of Woodland Patches As Hibernacula For Gartersnakes In A Prairie River Floodplain Of Central Nebraska, Tony Bridger, Keith Geluso

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Gartersnakes are common inhabitants along prairie rivers in the Great Plains, but little information is known about hibernacula among diverse floodplain habitats. We radio-tracked Common Gartersnakes (Thamnophis sirtalis) and Plains Gartersnakes (Thamnophis radix) to hibernacula on islands in a braided river system subject to frequent environmental changes along the Platte River in central Nebraska. We further examined capture rates of gartersnakes in floodplain woodland patches from June to November to examine seasonal use of this habitat. In early and mid-September, movements of snakes with transmitters were in grasslands. From late September to mid-October, the farthest movements …

Predicting Carcass Cut Yields In Cattle From Digital Images Using Artificial Intelligence, Darragh Matthews, Thierry Pabiou, Ross D. Evans, Christian Beder, Aengus Daly

Department of Mathematics Publications

Deep Learning (DL) has proven to be a successful tool for many image classification problems but has yet to be applied to carcass images. The aim of this study was to train DL models to predict carcass cut yields and compare predictions to more standard machine learning (ML) methods. Three approaches were undertaken to predict the grouped carcass cut yields of Grilling cuts and Roasting cuts from a large dataset of 54,598 and 69,246 animals respectively. The approaches taken were (1) animal phenotypic data used as features for a range of ML algorithms, (2) carcass images used to train Convolutional …

Undesired Effects Of Bioinsecticides Molecules In Wistar Rats: Case Of Spirotetramat, Citrulus Colocynthis And Cleome Arabica Extracts, Boublata Nour El Iméne, Manel Bekhakheche, Habbachi Sarra, Saadane Fatma Zohra, Bouzar Abir, Habbachi Wafa, Rebbas Khellaf, Tahraoui Abedkrim

Journal of Bioresource Management

The use of pesticides is becoming an indispensable technique in most agricultural practices, regardless of the level of development of the country. Currently, the pesticides used are often less toxic and more specific and are based on insect physiology. Recent studies indicate that pesticide intoxication induces oxidative stress. This work aims to study the neurobehavioral consequences of the administration of two insecticides currently widely used in agriculture: spirotetramat (an inhibitor of lipid synthesis in insects) and the ethanolic extract of Citrullus colocynthis (a plant endemic to the Algerian Sahara) and the ethanolic extract of Cleome arabica (Capparidaceae) The …

Localization Of Kisspeptin, Nkb, And Nk3r In The Hypothalamus Of Gilts Treated With The Progestin Altrenogest, Ashley N. Lindo, Jennifer F. Thorson, Michelle N. Bedenbaugh, Richard B. Mccosh, Justin A. Lopez, Samantha A. Young, Lanny J. Meadows, Elizabeth C. Bowdridge, Chrysanthi Fergani, Bradley A. Freking, Michael N. Lehman, Stanley M. Hileman, Clay A. Lents

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Mechanisms in the brain controlling secretion of gonadotropin hormones in pigs, particularly luteinizing hormone (LH), are poorly understood. Kisspeptin is a potent LH stimulant that is essential for fertility in many species, including pigs. Neurokinin B (NKB) acting through neurokinin 3 receptor (NK3R) is involved in kisspeptin-stimulated LH release, but organization of NKB and NK3R within the porcine hypothalamus is unknown. Hypothalamic tissue from ovariectomized (OVX) gilts was used to determine the distribution of immunoreactive kisspeptin, NKB, and NK3R cells in the arcuate nucleus (ARC). Almost all kisspeptin neurons coexpressed NKB in the porcine ARC. Immunostaining for NK3R was distributed …

Impact Of Feeding Syngenta Enogen® Feed Corn Compared To Control Corn In Different Diet Scenarios To Finishing Beef Cattle, Stacia M. Volk, Hannah H. Wilson, Kathryn J. Hanford, James C. Macdonald, Galen E. Erickson

Department of Animal Science: Faculty Publications

The objective of this pooled statistical analysis was to evaluate Syngenta Enogen® Feed Corn (EFC) versus conventional corn (CON) when fed as either dry-rolled corn (DRC) or highmoisture corn (HMC) for effects on finishing beef cattle performance and carcass characteristics. Corns were evaluated in diets with byproduct inclusion rates of 0, 15, 18, 20, and 30% distiller grains or 25 and 35% Sweet Bran® (a commercial corn gluten feed product). Seven trials (n = 1856) consisting of 200 pen means comparing 26 diet treatments were analyzed using regression in a pooled analysis. When EFC was processed as DRC, the gain …

The Sandhill Crane State: A Naturalist’S Guide To Nebraska, Paul Johnsgard

Zea E-Books Collection

This book includes the locations, descriptions, and points of biological, historical, geological, or paleontological interest of nearly 350 sites in Nebraska, most of which are free to access. Its 53,000 words include accounts of 9 state historical parks, 8 state parks, 2 national forests, 2 national monuments, and 7 national wildlife refuges as well as 181 wildlife management areas, 56 waterfowl production areas, and 54 state recreation areas. It also includes 48 state and county maps, 18 drawings, 33 photographs, and nearly 200 literature citations.

doi: 10.32873/unl.dc.zea.1305

Characterization Of Indoor Arenas Through An Anonymous Survey, Staci Mcgill, Morgan D. Hayes, Kimberly I. Tumlin, Robert Coleman

Biosystems and Agricultural Engineering Faculty Publications

Equine farms are building both stables for the horses to live in and additional facilities to train and work horses (Kidd et al., 1997). For many of these farms, an outdoor arena that has an all-weather footing is the first working facility built. During inclement weather the ability to train in the outdoor arenas is inhibited, which in turn means the trainers, riders, and farms lose income as money is only made when horses are working, training, and competing. Indoor arenas allow for horses to continue to be worked no matter the weather conditions. The equine industry contributes a total …

Diversity Of Tetrabothriidae (Eucestoda) Among Holarctic Alcidae (Charadriiformes): Resolution Of The Tetrabothrius Jagerskioeldi Cryptic Species Complex: Cestodes Of Alcinae—Provides Insights On The Dynamic Nature Of Tapeworm And Marine Bird Faunas Under The Stockholm Paradigm, Eric P. Hoberg, Kaylen Marie Soudachanh

MANTER: Journal of Parasite Biodiversity

We begin resolution of the Tetrabothrius jagerskioeldi–species complex with descriptions of Tetrabothrius alcae n. sp. based on numerous specimens, primarily in murres (species of Uria), from the greater North Pacific basin and Tetrabothrius sinistralis n. sp. based on cestodes in guillemots (species of Cepphus) from the central Bering Sea and West Greenland. These tetrabothriids are characterized, among 44 species of Tetrabothrius in avian hosts, by attributes of the scolex, male and female organ systems, structure and dimensions of the vitelline gland, numbers of testes, configuration of the genital atrium, genital papillae and the male and female atrial …

The Behaviors Of A Captive Father-Daughter Pair Of Ateles Geoffroyi Geoffroyi, Felicia Gordian

The Pegasus Review: UCF Undergraduate Research Journal

The Central Florida Zoo and Botanical Gardens intends to introduce new members to the black-handed spider monkeys (Ateles geoffroyi geoffroyi) enclosure. The behavioral analysis of captive animals within their human-made zoo environments is pertinent information for zookeepers before such an introduction can be made. To contribute to that goal, this study observed the behaviors of a father-daughter pair of black-handed spider monkeys. This study observed their vocalizations, habitat utilization, enrichment utilization, conspecific interactions, and interactions with humans to better understand how they interact with their environment as well as their group dynamics. This behavioral baseline can then be utilized to …

Non - Naturally Occurring Porcine Reproductive And Respiratory Syndrome Virus ( Prrsv ) And Methods Of Using, Hiep Lai Xuan Vu, Fernando Osorio, William W. Laegreid, Asit K. Pattnaik, Fangrui Ma

Department of Animal Science: Faculty Publications

A non - naturally occurring porcine reproductive and respi ratory syndrome virus ( PRRSV ) is provided herein , and methods of making and using the non - naturally occurring PRRSV also are provided

Relationship Of Molecular Breeding Value For Beef Tenderness With Heifer Traits Through Weaning Of Their First Calf, Robert A. Cushman, Gary L. Bennett, Richard G. Tait, Anthony K. Mcneel, Eduardo Casas, Timothy P.L. Smith, Harvey C. Freetly

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Polymorphisms in μ-calpain (CAPN1) that beneficially associate with beef tenderness are reported to antagonistically associate with calving day in beef heifers and post-partum interval to estrus in beef cows. We, therefore, hypothesized that a molecular breeding value for slice shear force, calculated based on CAPN1 and calpastatin (CAST) genotypes, would demonstrate an antagonistic relationship between genomically predicted slice shear force and ordinal calving date in replacement beef heifers. A secondary objective of this study was to evaluate the association of a polymorphism in diacylglycerol O-acyltransferase (DGAT1) with reproductive traits in beef heifers. One hundred eighty-seven MARC III heifers (¼ Angus, …

Validation Of High-Resolution Melting Assays For The Detection Of Virulent Strains Of Escherichia Coli O26 And O111 In Beef And Pork Enrichment Broths, Frank J. Velez, Joseph M. Bosilevac, Prashant Singh

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Extensive validation of diagnostic assays using widely collected surveillance samples is critical for developing pathogen detection assays. The detection of potentially virulent E. coli strains is critical to the red meat industry. We previously developed two high-resolution melting (HRM) assays for detecting potentially virulent and avirulent E. coli O26 and O111 strains. Assays were validated using enriched beef (n = 36) and pork (n = 36) samples collected as part of a U.S. federal regulatory surveillance program. Data from this study showed more than 90% sensitivity and specificity for both the HRM assays, demonstrating suitability for the red meat industry …

Genomic Analysis Of Shiga Toxin-Containing Escherichia Coli O157:H7 Isolated From Argentinean Cattle, Ariel Amadio, James L. Bono, Matías Irazoqui, Mariano Larzábal, Wanderson Marques Da Silva, María Florencia Eberhardt, Nahuel A. Riviere, David Gally, Shannon D. Manning, Angel Cataldi

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Cattle are the main reservoir of Enterohemorrhagic Escherichia coli (EHEC), with O157:H7 the distinctive serotype. EHEC is the main causative agent of a severe systemic disease, Hemolytic Uremic Syndrome (HUS). Argentina has the highest pediatric HUS incidence worldwide with 12–14 cases per 100,000 children. Herein, we assessed the genomes of EHEC O157:H7 isolates recovered from cattle in the humid Pampas of Argentina. According to phylogenetic studies, EHEC O157 can be divided into clades. Clade 8 strains that were classified as hypervirulent. Most of the strains of this clade have a Shiga toxin stx2a-stx2c genotype. To better understand the molecular bases …

Ecological Risk Assessment For The Temperate Demersal Elasmobranch Resource, Maddison Watt, Matias Braccini, Kimberley A. Smith, Matthew Hourston

Fisheries Research Reports

In March 2021, the Department of Primary Industries and Regional Development (Department) convened an ecological risk assessment (ERA) of the fisheries that access the Temperate Demersal Elasmobranch Resource (Resource). ERAs are conducted by the Department as part of its Ecosystem Based Fisheries Management framework.

2021 Assessment Of The Status Of The West Coast Demersal Scalefish Resource, David Fairclough, S. A. Hesp, Ainslie Denham, Emily A. Fisher, Rachel Marks, Karina L. Ryan, Elaine Lek, Rhys Allen, Brett Crisafulli

Fisheries Research Reports

A recovery program for the West Coast Demersal Scalefish Resource was introduced between late 2007 and early 2010, based on the maintenance of retained catches of demersal species (overall suite and each indicator species) by both the commercial and recreational sectors below 50% of the catches reported in 2005/06 (original catch recovery benchmarks).

Squid And Cuttlefish Resources Of Western Australia, Daniel Yeoh, Danielle Johnston, David C. Harris

Fisheries Research Reports

This report provides a description and assessment of the squid and cuttlefish resources of Western Australia, and all of the fishing activities (i.e. fisheries / fishing sectors) affecting these resources. Encompassed are multiple species in the orders Oegopsida and Myopsida (squid or ‘calamari’) and Sepiida (cuttlefish), including; southern calamari (Sepioteuthis australis), northern calamari (Sepioteuthis lessoniana), Gould’s squid (Nototodarus gouldi), loligo squids Uroteuthis (Photololigo) spp.,giant cuttlefish (Sepia apama), broadclub cuttlefish (Sepia latimanus) and pharaoh cuttlefish (Sepia pharaonis).

Assessing The Dispersal And Recruitment Of Stocked Walleye Fry In A Northern Minnesota Chain Of Lakes, Joseph W. Amundson

Biology Graduate Theses

As part of Minnesota's Walleye Sander vitreus egg take practice, 10% of eggs taken for hatchery purposes are stocked back into the donor lake. For Andrusia, part of the Cass Lake Chain of Lakes (Chain), this practice can result in elevated fry densities (mean: 17,000 fry/littoral hectare). However, if fry are able to disperse and use all available littoral hectares throughout the Chain, fry densities would be intermediate to typical stocking densities for Minnesota lakes (1,200 - 2,400 fry/littoral hectare). In 2016-2018, 3-3.5 million fry were mass-marked by immersion in oxytetracycline (OTC) prior to stocking into Andrusia to allow differentiation …

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Abundance, Foraging Levels, And Dietary Preferences Of Chaetodon Capistratus On Reefs Surrounding Porvenir Island In The Guna Yala Comarca Of Panamá, Eleanor Ann Casement

Independent Study Project (ISP) Collection

Reef fish are a physically and functionally diverse group of organisms that live in close association with coral reef habitats. Chaetodontidae represents the most species rich family of corallivorous fish, and their reliance on corals as food resources has led to their designation as indicator species of coral cover and health. However, the majority of research on the foraging ecology of Caribbean Chaetodontids dates back several decades, and therefore does not account for recent changes in coral community composition as the result of disease, climate change, and other stressors. As the novel and deadly stony coral tissue loss disease (SCTLD) …

Fisheries Science Update – October 2021: West Coast Demersal Scalefish Resource, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Occasional Publications

Key points: 2021 stock assessment outcomes • The West Coast Demersal Scalefish Resource (WCDSR) is halfway into a 20-year recovery plan following a period of overfishing in the 1990s and 2000s. • This latest assessment provides an important “health check” on the recovery status. • The recovery plan is based on maintaining recreational (including charter) and commercial sector’s total fishing mortality below catch limits and protecting key spawning aggregations to recover the WCDSR by 2030. • The Department of Primary Industries and Regional Development (DPIRD) tracks recovery progress by undertaking weight of evidence stock assessments of WCDSR indicator species dhufish …

Range-Wide Indicators Of African Great Ape Density Distribution, Isabel Ordaz‐Németh, Tenekwetche Sop, Bala Amarasekaran, Mona Bachmann, Christophe Boesch, Terry Brncic, Damien Caillaud, Geneviève Campbell, Joana Carvalho, Rebecca Chancellor, Tim R. B. Davenport, Dervla Dowd, Manasseh Eno‐Nku, Jessica Ganas‐Swaray, Nicholas Granier, Elizabeth Greengrass, Stefanie Heinicke, Ilka Herbinger, Clement Inkamba‐Nkulu, Fortuné Iyenguet, Jessica Junker, Kadiri S. Bobo, Alain Lushimba, Fiona Maisels, Guy Aimé Florent Malanda, Maureen S. Mccarthy, Prosper Motsaba, Jennifer Moustgaard, Mizuki Murai, Bezangoye Ndokoue, Stuart Nixon, Rostand Aba'a Nseme, Zacharie Nzooh, Lilian Pintea, Andrew J. Plumptre, Justin Roy, Aaron S. Rundus, Jim Sanderson, Adeline Serckx, Samantha Strindberg, Clement Tweh, Hilde Vanleeuwe, Ashley Vosper, Matthias Waltert, Elizabeth A. Williamson, Michael Wilson, Roger Mundry, Hjalmar S. Kühl

Anthropology & Sociology Faculty Publications

Species distributions are influenced by processes occurring at multiple spatial scales. It is therefore insufficient to model species distribution at a single geographic scale, as this does not provide the necessary understanding of determining factors. Instead, multiple approaches are needed, each differing in spatial extent, grain, and research objective. Here, we present the first attempt to model continent-wide great ape density distribution. We used site-level estimates of African great ape abundance to (1) identify socioeconomic and environmental factors that drive densities at the continental scale, and (2) predict range-wide great ape density. We collated great ape abundance estimates from 156 …

Free-Ranging And Feral Cats, Alex Dutcher, Kyle Pias, Grant Sizemore, Stephen M. Vantassel

Wildlife Damage Management Technical Series

Domestic cats (Felis catus) are a common household pet in the United States, with an estimated 25.4% of households owning cats (American Veterinary Medical Association 2018). While an increasing number of cat owners keep their pet cats exclusively indoors, a portion of society maintains that domestic cats are entitled to a free-ranging lifestyle and may even consider unowned domestic cats to be wildlife. Although wildlife managers recognize the beliefs of many concerned stakeholders, including advocates who use strong emotional appeals on behalf of cats, it remains that free-ranging and feral domestic cats are an invasive species spread by humans (Lowe …

Integrated Analyses Of Snp-Genotype And Environmental Data In A Continuously Distributed Snapper Species (Lutjanus Johnii, Bloch, 1792) Reveals A Mosaic Of Populations And A Challenge For Sustainable Management, Laura Taillebois, Danielle Davenport, Diane P. Barton, David Alexander Cook, Thor Saunders, Mark Hearnden, Richard J. Saunders, Stephen J. Newman, Michael J. Travers

Fisheries Research Articles

Understanding population structure is important for predicting the outcomes of anthropogenic development, harvest, and environmental change on the abundance of fisheries species. Logically, the use of several data sources is best for delineating population structure, but combining across data types adds extra challenges as results can be incongruent. Here, genetic and environmental markers were used to test hypotheses about population structure in a collection of 523 tropical inshore finfish (Lutjanus johnii) across northern Australia from 20 locations. Redundancy analyses (RDA) were used to statistically test for correlations among data sources providing a basis for reconciliation and insights into ecological and …