Animal Sciences Commons^™

Torque Teno Sus Virus 1: A Potential Surrogate Pathogen To Study Pig-Transmitted Transboundary Animal Diseases, Xiaolong Li, Brandon M. Parker, Raoul K. Boughton, James C. Beasley, Timothy J. Smyser, James D. Austin, Kim M. Pepin, Ryan S. Miller, Kurt C. Vercauteren, Samantha M. Wisely

United States Department of Agriculture Wildlife Services: Staff Publications

Understanding the epidemiology and transmission dynamics of transboundary animal diseases (TADs) among wild pigs (Sus scrofa) will aid in preventing the introduction or containment of TADs among wild populations. Given the challenges associated with studying TADs in free-ranging populations, a surrogate pathogen system may predict how pathogens may circulate and be maintained within wild free-ranging swine populations, how they may spill over into domestic populations, and how management actions may impact transmission. We assessed the suitability of Torque teno sus virus 1 (TTSuV1) to serve as a surrogate pathogen for molecular epidemiological studies in wild pigs by investigating …

Common Grackle (Quiscalus Quiscula) Predation Of A Great Lakes Piping Plover (Charadrius Melodus) Nest And Its Conservation Implications, Jade R. Arneson, Dennis A. Peloquin, Thomas G. Prestby, Sarah P. Saunders

United States Department of Agriculture Wildlife Services: Staff Publications

Common grackle (Quiscalus quiscula) was observed consuming eggs from an exclosed (protected) Great Lakes piping plover (Charadrius melodus) nest in the lower bay of Green Bay, Lake Michigan in Wisconsin, USA during June 2023. The observation, captured by a trail camera, is the first photographic documentation of grackle predation in any of the three piping plover breeding populations. This behavior adds common grackle to the suite of egg predators and has critical implications for this shorebird species, particularly in the Great Lakes region where piping plover is listed as federally endangered and common grackles are relatively …

The Texas Feral Swine Eradication And Control Pilot Program, David R. Pipkin, Bruce R. Leland, Katherine Garwood, Linda Tschirhart-Hejl, Michael J. Bodenchuk, John M. Tomecek

United States Department of Agriculture Wildlife Services: Staff Publications

The United States Agriculture Improvement Act of 2018 (the 2018 Farm Bill) established the Feral Swine Eradication and Control Pilot Program. The program funded US$75M for 5 years, split evenly between the Natural Resources Conservation Service (NRCS) and the Animal and Plant Health Inspection Service (APHIS), both programs within the United States Department of Agriculture. The agencies solicited joint programs from states with high densities of feral swine in two phases. In Texas, NRCS and APHIS submitted three multi-county project areas along watersheds for Phase I funding and one eradication effort along with two crop protection projects in Phase II. …

The Influence Of Social And Spatial Processes On The Epidemiology Of Environmentally Transmitted Pathogens In Wildlife: Implications For Management, Aakash Pandey, Chris Wojan, Abigail Feuka, Meggan E. Craft, Kezia Manlove, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Social and spatial structures of host populations play important roles in pathogen transmission. For environmentally transmitted pathogens, the host space use interacts with both the host social structure and the pathogen’s environmental persistence (which determines the timelag across which two hosts can transmit). Together, these factors shape the epidemiological dynamics of environmentally transmitted pathogens. While the importance of both social and spatial structures and environmental pathogen persistence has long been recognized in epidemiology, they are often considered separately. A better understanding of how these factors interact to determine disease dynamics is required for developing robust surveillance and management strategies. Here, …

Divergent Response To Anthropogenic Change Within The Songbird Taxon: Insights From The Range Expansion Of The Northern Cardinal And Mitigation Mechanisms For Migratory Bird-Building Collisions, Jenna Brewer

Dissertations, Master's Theses and Master's Reports

Anthropogenic activities have impacted ecosystems across the globe. However, wildlife species have exhibited heterogenous responses to these novel changes, with some species experiencing population growth, and others succumbing to population decline. I studied examples of both within the songbird taxon, focusing on drivers of range expansion in the Northern Cardinal and acoustic mitigation mechanisms for migratory bird-building collisions, a source of decline for many songbird species. I found that the Northern Cardinal’s range was primarily a function of climatic stress, which was supported by the modulation of the molt process across latitudes. Specifically, Northern Cardinals exhibited faster feather growth rates …

Native Forbs Provide Pollinator Resources And Improve Forage Nutrient Composition, Animal Performance, And Pasture Productivity, Jessica L. Prigge, Eric Bisangwa, Jonathan D. Richwine, Virginia R. Sykes, Jennie Lz Ivey, Patrick D. Keyser

Faculty Publications

Pollinator declines and expectations for more sustainable agriculture, including pasture-based enterprises, bring attention to strategies to enhance the habitat value of grazing lands. We evaluated native warm-season grass (NWSG) pastures with (FORB) and without (CONT) interseeded native forbs in 2021–2023. An analysis was conducted using R with the significance set at p ≤ 0.05. The grass appeared to be weakened predominantly by grazing management practices. Forb density and mass had an inverse relationship in seasons two and three. Total forage mass declined in response to increased grazing days and weakened stands. The forage nutritive compositions differed, with more stable, season-long …

Adding Value To Crop Production Systems By Integrating Forage Cover Crop Grazing, Robert B. Mitchell, Daren D. Redfearn, Kenneth P. Vogel, Terry J. Klopfenstein, Galen Erickson, P. Steven Baenziger, Bruce E. Anderson, Mary E. Drewnoski, Jay Parsons, Steven D. Masterson, Marty R. Schmer, Virginia L. Jin

Department of Agronomy and Horticulture: Faculty Publications

In addition to their value as cereal grains, wheat (Triticum aestivum L.) and triticale (× Triticosecale Wittmack) are important cool-season annual forages and cover crops. Yearling steer (Bos taurus) performance was compared in the spring following autumn establishment as for age cover crops after soybean [Glycine max (L.) Merr.] grain harvest. Replicated pastures (0.4 ha) were no-till seeded in three consecutive years into soybean stubble in autumn, fertilized, and grazed the following spring near Ithaca, Nebraska, USA. Each pasture (n = 3) was continuously stocked in spring with four yearling steers (380 ± 38 kg) for …

Longevity In Afrikaner Cattle: A Survival Analysis, Allison M. Bot Steffl

Electronic Theses and Dissertations

The Afrikaner breed of cattle is indigenous to South Africa and due to their hardiness was once the most popular breed amongst farmers. The objectives for this study were to: (1) estimate environmental effects (age at first calving, season) and (2) genetic variance affecting longevity in Afrikaner cattle using survival analysis and a Weibull model and (3) evaluate the effect of the Infusion Project on longevity utilizing a Cox model. For the first objective, age at first calving impacted longevity as younger age at first calving was associated with decreased longevity. Season of birth and year of birth also impacted …

Understanding Angler Responses To Fish Stocking Programs Across South Dakota, Riley L. Mounsdon

Electronic Theses and Dissertations

Fisheries management is a complex process that often requires consideration of many factors to be implemented effectively. Stocking is one of the most often used fisheries management techniques for addressing a myriad of issues in the fisheries field. Stocking is also one of the largest expenses for many fisheries management agencies. Due to license sale declines, management actions including stocking, are being evaluated by many agencies to determine if there are ways to improve efficiency and effectiveness to reduce costs and enhance angler participation. For my second chapter, I evaluated the current fish stocking decision-making process within South Dakota Game, …

Influence Of Reduced Salt In Fully Cooked Ham And Sausage Cured With Natural Celery Powder On The Growth Of Listeria Monocytogenes At 4⁰C, Anne Sherod

Electronic Theses and Dissertations

This research evaluated the influence of reducing salt on outgrowth of L. monocytogenes on ready to eat (RTE) deli-style sliced ham cured with natural celery powder, fully cooked sausage links cured with traditional sodium nitrite and sausage links cured with natural celery powder, vacuum packaged and stored at 4⁰C on the outgrowth of L. monocytogenes. Experiment 1 evaluated L. monocytogenes outgrowth on ham over 153 days on the following treatments, current retail ham (HC) 2.0% salt; reduced salt 1 (HRS1) 1.5% salt; reduced salt 2 (HSR2) 1.35% salt; and reduced salt 2 without antimicrobials (HRS2WA) 1.35% salt without potassium lactate …

Role Of Production Systems On Carcass And Palatability Attributes Of Bison, Lydia Margaret Hite O'Sullivan

Electronic Theses and Dissertations

The overall objective of this dissertation was to determine the impact of finishing systems on carcass and palatability attributes of bison. The specific objectives were 1) determine the influence of finishing system (grain-finished vs. grass-finished) on the mechanisms of tenderness formation in the longissimus lumborum of bison bulls, 2) determine the influence of diverse finishing systems on carcass characteristics and proximate composition of bison heifers, and 3) determine the influence of diverse finishing systems on palatability of striploin steaks from bison heifers. Results indicate that finishing systems differentially influence carcass characteristics, tenderness, and flavor attributes of bison. Specifically, this is …

Determination Of Nutrients Digestibility In Commercial Dry Dog Food Containing Various Protein Sources, Phuong Anh Ta

Chulalongkorn University Theses and Dissertations (Chula ETD)

This study evaluated the nutritional adequacy and digestibility of commercial dry dog foods formulated with different protein sources (animal versus plant) and market tiers (premium versus economy). Eight commercial dog foods were analyzed for nutrient composition and amino acid profiles using proximate analysis and high-performance liquid chromatography (HPLC). Of these, four representative products were selected to assess digestibility through in vivo total fecal collection in Beagle dogs and in vitro digestion assays. All products exceeded 18% crude protein (the minimum crude protein requirement by AAFCO). However, deficiencies were examined in essential amino acids, particularly leucine, isoleucine, methionine, lysine, tryptophan, valine …

Deep Transfer Learning-Based Bird Species Classification Using Mel Spectrogram Images, Mrinal Kanti Baowaly, Bisnu Chandra Sarkar, Md.Abul Ala Walid, Md. Martuza Ahamad, Bikash Chandra Singh, Eduardo Silva Alvarado, Imran Ashraf, Md. Abdus Samad

School of Cybersecurity Faculty Publications

The classification of bird species is of significant importance in the field of ornithology, as it plays an important role in assessing and monitoring environmental dynamics, including habitat modifications, migratory behaviors, levels of pollution, and disease occurrences. Traditional methods of bird classification, such as visual identification, were time-intensive and required a high level of expertise. However, audio-based bird species classification is a promising approach that can be used to automate bird species identification. This study aims to establish an audio-based bird species classification system for 264 Eastern African bird species employing modified deep transfer learning. In particular, the pre-trained EfficientNet …

Density And Abundance Estimation Of West Indian Manatee, Trichechus Manatus, Between The States Of Ceará And Piauí, Northeast Brazil, Using Active Acoustics, Katherine Fiedler Choi Lima, Denis Moledo De Sousa Abessa, Daniel Gonzalez-Socoloske, Renata Sousa-Lima, Ana Carolina Oliveira De Meirelles, Cristine Pereira Negrão Silva

Faculty Publications

The West Indian manatee is one of the most threatened species in Brazil. The species has currently a patchy distribution from the state of Alagoas to the state of Amapá. The difficulty of observing manatees, especially in estuarine waters, is a challenge for conservation. Therefore, it is necessary to use new methodologies and technologies to solve manatee detection problems in their natural habitats. The goal of this study was to use an active acoustic method of detection to estimate manatee density and abundance in the estuarine complex of the Timonha and Ubatuba rivers, between the states of Ceará and Piauí, …

Relationships Between Cliff Swallows (Petrochelidon Pyrrhonota) And Feather Coloration, Morphological Characteristics, And Colony Size, Sonja M. Brandt

Master's Theses or Doctor of Nursing Practice

Environmental stressors such as drought and roadways can strongly affect breeding birds. Cliff Swallows (Petrochelidon Pyrrhonota) are aerial insectivores that experience mortality from car collisions, because they often nest and hunt under bridges and road culverts. Individual traits that may convey social information, such as body condition, or feather coloration, might be associated with better coping around cars and other environmental stressors. Few studies have investigated relationships between coloration and other environmental stressors, such as water loss due to drought near the colony and foraging areas. Colony size can be heavily affected by various environmental factors such as water level …

Immune Outcomes Affected By Selection For Parasite Resistance In Katahdin Sheep, Kelsey Lynne Bentley

Graduate Theses, Dissertations, and Problem Reports (ETD)

Our understanding of the complex connection between selection for parasite resistance and the overall health outcomes in livestock is unclear. This study investigates the impact of post-weaning fecal egg count (PFEC) estimated breeding values (EBV) on health outcomes and immune responses in Katahdin sheep. Selection for PFEC, favoring Low-PFEC lambs, not only affects survivability to weaning but also suggests broader implications for immunity beyond parasite resistance. The effect of PFEC EBV on antibody production in response to vaccination against Clostridium perfringens type C&D and tetanus toxoid (CD&T) revealed a stepwise decrease in immunoglobin (IgG) from Low-PFEC to High-PFEC groups upon …

Hepatic Mrna Expression Of Innate And Adaptive Immune Genes In Beef Steers With Divergent Residual Body Weight Gain, Deborah Ologunagba

Graduate Theses, Dissertations, and Problem Reports (ETD)

Immune system function is critical to maintaining the health and increasing productivity of cattle, affecting both their growth and their disease resistance. In an efficient immune system, the liver assumes an integral function in detoxification and metabolic processes and contributes substantially to overall production and immunity. In this study, we evaluated the hepatic mRNA expression of genes involved in innate and adaptive immunity in crossbred beef steers with either a positive or negative residual body weight gain (RADG). Positive-RADG beef steers (n = 8; RADG = 0.76 kg/d) and negative-RADG beef steers (n = 8; RADG = -0.64 kg/d) were …

The Impacts Of Gut-Supporting Feed Additives On The Growth Performance, Gut Health, Blood Chemistry, And Immune Status Of Broiler Chickens Exposed To Different Stressors, Richard A. Adefioye

Theses and Dissertations--Animal and Food Sciences

Three experiments were conducted to examine the effects of different feed additives in mitigating stress in broiler chickens. Experiment 1 used 504-day-old male by-product Cobb breeder chicks with 8 treatments replicated 9 times with 7 birds per replicate cage, structured as a 2x4 factorial arrangement of treatments. All birds were on the experimental diets for 20 days. There were 2 levels of lipopolysaccharide (LPS) challenge [no challenge vs. LPS challenge at 1 mg/kg BW) and 4 types of feed additives [no additive, 0.05% PostB, 0.1% PostB, and 0.1% Tynagen^TM]. In experiment 2, 672-day-old male by-product Cobb breeder chicks …

Active Facilitation Of Helper Dispersal By Parents And Siblings In The Cooperatively Breeding Acorn Woodpecker, Natasha D. G. Hagemeyer, Walter D. Koenig, Eric L. Walters

Biological Sciences Faculty Publications

Offspring that delay dispersal in cooperatively breeding species have been hypothesized to gain direct fitness benefits via parental facilitation—being passively tolerated on their natal territory by their parents—thereby enjoying enhanced survival and increased probability of acquiring a breeding position in the population. Here we describe active facilitation in the acorn woodpecker (Melanerpes formicivorus) by parents and siblings assisting the dispersal of helpers in their social group. Helpers in this species compete for reproductive opportunities in “power struggles” that take place when all breeders of one sex die or disappear, creating a reproductive vacancy. Individuals compete at power struggles …

Baby's First Jets: A Kinematic And Hydrodynamic Analysis Of Turning In Cuttlefish Hatchlings, Alissa M. Ganley, Paul S. Krueger, Ian K. Bartol

Biological Sciences Faculty Publications

Turning is an important aspect of life underwater, playing integral roles in predator avoidance, prey capture, and communication. While turning abilities have been explored in a diversity of adult nekton, little is currently known about turning in early ontogeny, especially for cephalopods. In this study, we investigated the turning abilities of hatchling common cuttlefish (Sepia officinalis, n = 49) and dwarf cuttlefish (Sepia bandensis, n = 30), using both kinematic and wake-based analyses. Using body tracking software and particle image velocimetry (PIV), we found that S. officinalis turned faster than S. bandensis, but both species …

Parasite Prevalence And Innate Immunity In Mud And Musk Turtles, Nicole Beckett

Honors Program Theses

Turtles are being infected by both ectoparasites (typically leeches) and endoparasites (typically blood parasites). It is unknown what the parasite intensity is of wild Central Floridian turtles is, and what effect this parasite load has on them. In order to determine these factors wild turtles (Sternotherus odoratus, Kinosternon baurii, and Kinosternon subrubrum) were caught from two locations, Mead Botanical Gardens, and Lake Virginia. Hoop traps were used to catch the turtles, which were then sampled and released. Captured turtles went through a series of measurements as well as a blood draw before release. Blood parasite levels were taken from the …

Migration-Associated Variation In Blood Parasitism, Body Condition, And Stress In Gambel’S White-Crowned Sparrows (Zonotrichia Leucophrys Gambelii), Julianna Deibel

Scripps Senior Theses

Migration is a widespread behavior in animals which both causes and is motivated by fluctuations in nutrient availability. Migration is ecologically important, as it connects areas of differing primary productivities and carries pathogens over distance. The relationship between migration and disease is complex, sensitive to anthropogenic disturbance, and influenced by ecological cycles as well as host, vector and parasite life cycles. Four central migration-infection mechanisms have been proposed: migratory susceptibility, migratory exposure, migratory escape, and migratory culling. These mechanisms may yield increased or decreased infection post-migration, based on migration’s physiological tax and the concentration of pathogens along migratory pathways.

To …

The Smell Of Fear: Responses Of Native And Invasive Geckos To Predator Scent Cues On Moorea, French Polynesia, Haley Dreisbach, Tessa Bodo

Williams Honors College, Honors Research Projects

Hemidactylus frenatus, a globally invasive species, is syntopic with the native gecko Lepidodactylus lugubris on the island of Moorea, French Polynesia. The success of an invasive species, H. frenatus can be attributed to many factors and is the subject of much study. Some research suggests that invasive and native geckos may differ in their response to chemosensory cues from predators. We compared the responses of H. frenatus and L. lugubris to the scents of both a native local predator; centipede, and a common predator of geckos that is not present on Moorea; snake. While neither gecko species showed any …

Compliance And Roughness In Relation To Gecko Locomotion, Brooklynn Campbell

Williams Honors College, Honors Research Projects

Geckos move efficiently through a variety of substrates, from swaying branches to wooden fences to the sides of structures. Previous studies have studied locomotion and adhesion on manmade and rough substrates; however, the work is limited when discussing locomotion and adhesion as a relationship of compliance and roughness. Ease of movement was quantified by speed, under the assumption that the faster a gecko moves, the easier it is for the gecko to cross the substrate. Gehyra oceanica geckos from Moorea, French Polynesia were tested on substrates varying in compliance and roughness with four different treatments in total. Compliance, roughness, and …

Relationship Between Socking Rate And Production Of Stocker Hybrid Tilapia And Water Quality In A Mixtotrophic Biofloc System, Bartholomew W. Green, Steven D. Rawles, Candis L. Ray, Matthew E. Mcentire

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Intensified production of stocker-size tilapia can be accomplished using the biofloc technology production system. Stocker-size tilapia (ca. 10–200 g/fish) are raised for subsequent stocking for grow-out to market size. The relationship between stocking rate and the production of stocker-size hybrid tilapia (Oreochromis aureus x O. niloticus) was evaluated in two studies in outdoor mixotrophic biofloc tanks. Hybrid tilapia were stocked in 18.6-m² (15.7-m³) tanks at 50–150 fish/m² (59–178 fish/m³) in 25 fish/m² (30 fish/m³) increments in Study 1 and grown for 141–143 days. Stocking rates evaluated in 4.7-m …

Classification Of Sow Postures Using Convolutional Neural Network And Depth Images, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The United States swine industry reports an average preweaning mortality of approximately 16% where approximately 6% of them are attributed to piglets overlayed by sows. Detecting postural transitions and estimating sows’ time budgets for different postures are valuable information for breeders and engineering design of farrowing facilities to eventually reduce piglet death. Computer vision tools can help monitor changes in animal posture accurately and efficiently. To create a more robust system and eliminate varying lighting issues within a day including daytime/ nighttime differences, there is an advantage to using depth cameras over digital cameras. In this study, a computer vision …

Effects Of Energy Drink Additives On Crayfish Metabolism, Katherine Paltz

Williams Honors College, Honors Research Projects

The effects of caffeine and additives commonly found in energy drinks were tested on crayfish to record changes, if any, in their metabolism. Three experimental groups were studied: 1. Caffeine; 2. Caffeine + Glucuronolactone; 3.) Caffeine + Glucuronolactone + Taurine. Caffeine is a common stimulant used to improve mental awareness, headaches, memory, and athletic performance. Glucuronolactone is connected with cardiovascular issues and aggressive behavior. Taurine is said to improve mood and focus. The experiment was performed at two different caffeine levels: 600mg and 1200mg for an initial 1 hour of exposure and 10 hours after exposure used as a pseudo-baseline. …

Crayfish Tube-Feeding Methodology, Phoenix Johnson

Williams Honors College, Honors Research Projects

The purpose of this paper was to use a tube feeding method on crayfish to expose them to substances through ingestion rather than the gill. This was done to mimic human ingestion of substance to aid in crayfish research involving substances that are normally ingestion. This was done by using a pipette to inject grains of sand into the mouth of the crayfish. To determine if the method worked and successfully went into the stomach the grains of sand were recovered and counted under a microscope after certain increments of time post injection.

Discrimination Among Similarly Colored Goose Species In Federal Harvest Surveys, Joshua L. Dooley, Paul F. Doherty Jr., David L. Otis, Gary C. White, Daniel R. Taylor, Doreen L. Griffin, Syephen C. Chandler, Stephanie M. Catino, Kathy K. Fleming, Robert V. Raftovich, Antoinette J. Piaggio

United States Department of Agriculture Wildlife Services: Staff Publications

Each year in the United States, fall‐winter (sport) harvests of goose species are estimated from federal surveys coordinated by the United States Fish and Wildlife Service, including the Migratory Bird Harvest Survey to estimate total goose harvest and the Parts Collection Survey (PCS) to estimate the species and age composition. For the PCS, randomly selected hunters collect tail and wing feathers of each goose shot during the hunting season, and then biologists determine the age class and species of each sample at organized events (Wingbees) in each of the 4 flyways (Pacific, Central, Mississippi, and Atlantic). For similarly colored goose …

Population Growth Rates Of Pronghorn: Influence Of Temporally And Spatially Explicit Conditions, Density Dependence, And Scale, Eric M. Gese, Cole A. Bleke, Shane B. Roberts, Paul Atwood, Patricia A. Terletzky

United States Department of Agriculture Wildlife Services: Staff Publications

Density-independent and density-dependent population regulation has long been a subject of investigation. We examined density-dependent and density-independent factors on growth rates of pronghorn (Antilocapra americana (Ord, 1815)) using a retrospective analysis of population survey data. Across Idaho, we found that as the proportion of the subpopulation harvested the previous year increased, growth rates increased. Similarly, as fawn recruitment increased, growth rates increased. We also found when the growth rate in the previous year increased, the growth rate the subsequent year decreased. When subpopulations were examined independently, we found that in a low-elevation desert subpopulation, growth rates were influenced by …