Animal Sciences Commons^™

Effects Of Feeding Distillers Grains Throughout A Yearling Heifer Beef Production System On Meat Quality Attributes And Effects Of Omnigen-Af With Ractopamine Hydrochloride On Animal Performance And Beef Carcass Characteristics Of Feedlot Steers, Kelby M. Sudbeck

Department of Animal Science: Dissertations, Theses, and Student Research

Heifers (n = 229; 225 kg ± 2) were used in a 2 x 2 x 2 factorial to determine the effects of longterm exposure to corn distillers grains plus solubles (DGS) on meat quality characteristics. Factors included supplementing 0.91 kg (LW) or 2.3 kg (HW) modified DGS (MDGS) while grazing corn stalks; 0.6% BW dry DGS (SS) daily or none (NS) during summer grazing; and finishing diet containing 40% wet corn gluten feed (CGF) or 40% MDGS (DGF) on a DM basis. An interaction was observed within CGF for discoloration, with SS increasing discoloration 30%; but no differences between …

Examining Predation As A Possible Means Of Controlling Crown-Of- Thorns Starfish (Acanthaster Planci) Outbreaks On Reefs Around Lizard Island, Australia, Amanda Chan

Independent Study Project (ISP) Collection

Since the world’s coral reefs are currently threatened by a variety of different natural and anthropogenic factors, research on protecting coral reefs is pivotal to protect these diverse ecosystems. However, only Indo-Pacific reefs such as the Great Barrier Reef are dying due to a corallivorous echinoderm threat known as the Crown-of-Thorns Starfish (Acanthaster planci). A. planci is a starfish which feeds on coral tissue and can quickly reduce coral cover on a reef during an outbreak. Although scientists are still unsure as to what causes these outbreaks, one suggestion is the predator-removal theory. The predator removal-theory states that major predators …

Index-Based Insurance And Risk Management Among Nomadic Mongolian Herders , Kelsey Larson

Independent Study Project (ISP) Collection

Mongolian herders must contend with the risk of dzuds, harsh winters that can kill large numbers of livestock. To do so, they use a mixture of formal financial tools and traditional risk mitigation techniques. This paper is a study of the interaction between the Mongolian Index-based Livestock Insurance Program and traditional informal risk mitigation techniques. The researcher interviews herders in Bulgan soum, Arhangai aimag and Galuut soum, Bayanhongor aimag to compare the IBLI program’s impact in a community that has had IBLI since 2006 and one that only received IBLI in 2012. This study finds that insurance purchase is positively …

New Study Of Altitude And Butterfly Diversity Evaluation Of Butterfly Diversity In La Hesperia And Influence Of Altitude On Diversity, Savannah Artusi

Independent Study Project (ISP) Collection

Due to the increasing effects of climate change, studies focusing on bioindicator species are becoming more necessary than ever. Additionally, knowledge about global biodiversity can be very useful to conservation organizations because it helps them determine what areas need to be conserved the most .Butterflies are useful as bioindicators due to their complex life cycles, importance in the food chain, and sensitivity to environmental changes. This project focused on studying the overall biodiversity of butterflies in the La Hesperia reserve. In addition, this study aimed to determine how butterfly diversity varies at different altitudes. To do this, the reserve was …

New Observations Of The Andean Ibis (Theristicus Branickii, Threskiornithidae): Distribution, Movements, And Behavior Near Volcán Antisana, Benjamin West

Independent Study Project (ISP) Collection

The Andean Ibis (Theristicus branickii) of the highland grasslands of Ecuador, Peru, and Bolivia is listed globally as Near Threatened and Critically Endangered in Ecuador. The Ecuadorian population is estimated at 100 individuals and is restricted to the vicinities of Volcán Antisana and Volcán Cotopaxi. Knowledge of the nesting biology of the Andean Ibis in Ecuador consists of a single filming in 1989. Much of its general ecology and movements is also unknown. The purpose of this study was to find evidence of nesting ibis in Ecuador while also collecting data on behavior, population, movements and interspecific interactions. Data was …

The Impacts Of Feral Horses On The Use Of Water By Pronghorn On The Sheldon National Wildlife Refuge, Nevada, Amy Marie Gooch

Theses and Dissertations

Feral horses occupy 31.6 million acres throughout western North America. Feral horses share similar habitats with a wide range of animal species, including pronghorn. Since horses are larger and often more aggressive than other animals of this region, they are generally socially dominant over all other native ungulate species. Pronghorn share water sources with horses in areas where both occur. In situations where horses exclude pronghorn from water, pronghorn fitness may be impaired, especially during the hottest months of the year when water is limited. The purpose of this study was to investigate interference competition between pronghorn and feral horses …

Comparative Genomics Reveals Insights Into Avian Genome Evolution And Adaptation, Guojie Zhang, Cai Li, Qiye Li, Bo Li, Dennis M. Larkin, Chul Lee, Jay F. Storz, Agostinho Antunes, Matthew J. Greenwold, Robert W. Meredith, Anders Ödeen, Jie Cui, Qi Zhou, Luohao Xu, Hailin Pan, Zongji Wang, Lijun Jin, Pei Zhang, Haofu Hu, Wei Yang, Jiang Hu, Jin Xiao, Zhikai Yang, Yang Liu, Qiaolin Xie, Hao Yu, Jinmin Lian, Ping Wen, Fang Zhang, Hui Li, Yongli Zeng, Zijun Xiong, Shiping Liu, Long Zhou, Zhiyong Huang, Na An, Jie Wang, Quimei Zheng, Yingqi Xiong, Guangbiao Wang, Bo Wang, Jingjing Wang, Yu Fan, Rute R. Da Fonseca, Alonzo Alfaro-Núñez, Mikkel Schubert, Ludovic Orlando, Tobias Mourier, Jason T. Howard, Ganeshkumar Ganapathy, Andreas Pfenning, Osceola Whitney, Miriam V. Rivas, Erina Hara, Julia Smith, Marta Farré, Jitendra Narayan, Gancho Slavov, Michael N. Romanov, Rui Borges, João Paulo Machado, Imran Khan, Mark S. Springer, John Gatesy, Federico G. Hoffmann, Juan C. Opazo, Olle Håstad, Roger H. Sawyer, Heebal Kim, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, Ning Li, Yinhua Huang, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Mads F. Bertelsen, Elizabeth Derryberry, Wesley Warren, Richard K. Wilson, Shengbin Li, David A. Ray, Richard E. Green, Stephen J. O'Brien, Darren Griffin, Warren E. Johnson, David Haussler, Oliver A. Ryder, Eske Willerslev, Gary R. Graves, Per Alström, Jon Fjeldså, David P. Mindell, Scott V. Edwards, Edward L. Braun, Carsten Rahbek, David W. Burt, Peter Houde, Yong Zhang, Huanming Yang, Jian Wang, Avian Genome Consortium, Erich D. Jarvis, M. Thomas P. Gilbert, Jun Wang

Jay F. Storz Publications

Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. The avian genome is principally characterized by its constrained size, which predominantly arose because of lineage-specific erosion of repetitive elements, large segmental deletions, and gene loss. Avian genomes furthermore show a remarkably high degree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal structure. Despite this pattern of conservation, we detected many non-neutral evolutionary changes in protein-coding genes and noncoding regions. These analyses …

Methane Production By A Packed-Bed Anaerobic Digester Fed Dairy Barn Flush Water, Sean Richard Thomson

Master's Theses

Packed-bed digesters are an alternative to covered lagoon digesters for methane production and anaerobic treatment of dilute wastewaters such as dairy barn flush water. The physical media of packed-beds retain biofilms, often allowing increased treatment rates. Previous studies have evaluated several types of media for digestion of dilute wastewaters, but cost and media fouling have setback commercial development. A major operational cost has been effluent recirculation pumping.

In the present effort, a novel approach to anaerobic digestion of flush dairy water was developed at pilot-scale: broken walnut shells were used as a low-cost packed-bed medium and effluent recirculation was replaced …

Managing Devil Facial Tumour Disease In Tasmanian Devils (Sarcophilus Harrisii): An Investigation Of Heat Shock Proteins As Potential Vaccine Adjuvants, Monika Payerhin

Independent Study Project (ISP) Collection

The world’s largest carnivorous marsupial, the Tasmanian devil (Sarcophilus harrisii), is facing extinction from a deadly, highly communicable cancer that has already decimated over 85% of devil populations in the wild: devil facial tumour disease (DFTD). DFTD cells effectively evade recognition by the immune system, and every devil that contracts the disease dies from it. Many attempts have been made at developing a vaccine that could help save this now-threatened species. Heat shock proteins have been linked to enhanced immune recognition of pathogens, making them potential candidates for acting as adjuvants to such a vaccine against DFTD. In this study, …

The Effects Of Limestone Particle Size On Bone Health And Performance Of Pullets And Hens In Conventional Cage And Alternative Housing Systems, Pamela E. Eusebio Balcazar

Department of Animal Science: Dissertations, Theses, and Student Research

One of the major welfare issues in cage-free housing systems is bone fracture. The goal of this research was to improve bone health in layers by building better pullet skeletons and to investigate limestone particle size (LPS) effects on bone health in conventional cages and cage-free housing systems. Study 1 was a preliminary study that compared conventional cages with litter floor pens in terms of performance, bone health, and eggshell quality from 33 to 47 wk of age. Caged hens had higher egg production and eggshell strength, and improved feed efficiency, but lower tibia bone mineral content compared to floor …

Energy Value Of De-Oiled Distillers’ Grains Plus Solubles In Beef Cattle Diets, Meredith L. Bremer

Department of Animal Science: Dissertations, Theses, and Student Research

Ethanol plants are centrifuging off oil from the thin stillage stream as it has added market value currently. The impact of oil removal on cattle performance has been minimally researched. Thus four trials, one growing, one digestion, and two feedlot, were designed to determine the energy and feeding value of de-oiled distillers grains in beef cattle diets.

In growing cattle diets, diet concentration of modified distillers grains plus solubles (MDGS) impacted cattle performance more than oil content. Ending BW, ADG, and G:F did not differ between cattle fed de-oiled or full fat MDGS, however cattle fed de-oiled MDGS had lower …

Effects Of Step Training On The Kidneys Following Spinal Cord Injury In Rats., Pradeepa Poudyal

Electronic Theses and Dissertations

Detrusor-sphincter dyssynergia after chronic spinal cord injury (SCI) leads to over-distention, high bladder pressures and vesico-ureteric reflux into the kidney, resulting in repeated infections and pyelonephritis. Given the importance/limited knowledge of SCI effects on the upper urinary tract, this study assessed expression of two proteins in the kidneys of contused (T9) male rats relative to controls that are indicative of tissue stress/damage (TGFβ, CD11b). The impact of two therapeutic rehabilitation strategies, 60 minutes of step training and general exercise, was then assessed on these protein levels relative to non-trained SCI controls, plus the effectiveness of a shorter training duration (30 …

Central Administration Of Neuropeptide Y (Npy) And Vasotocin 4 Receptor (Vt4r/V1ar) Antagonists On Food Intake And A Stress Response In Chicks, Megan Ann Hancock

Graduate Theses and Dissertations

The objective of this study was to determine the central effect of the VT4R antagonists (SR-49059 and H-5350 (Manning compound)) on corticosterone (CORT) levels during stress and food intake. A 22-gauge stainless steel guide cannula was surgically implanted into the lateral ventricle of the birds. A preliminary study was done to test the antagonists and their role on food intake. Birds were injected with saline, NPY (4µg), NPY (4µg)+SR-49059 (250ng), or NPY (4µg)+Manning compound (250ng). Birds injected with saline had the lowest 1h food intake (17.7g1.6). Birds injected with NPY+saline had a significantly higher intake (27.1g 1.0), which was enhanced …

Targeted Sequencing Of Plant Genomes , Mark D. Huynh

Theses and Dissertations

Next-generation sequencing (NGS) has revolutionized the field of genetics by providing a means for fast and relatively affordable sequencing. With the advancement of NGS, whole- genome sequencing (WGS) has become more commonplace. However, sequencing an entire genome is still not cost effective or even beneficial in all cases. In studies that do not require a whole-genome survey, WGS yields lower sequencing depth and sequencing of uninformative loci. Targeted sequencing utilizes the speed and low cost of NGS while providing deeper coverage for desired loci. This thesis applies targeted sequencing to the genomes of two different, non-model plants, Artemisia tridentate (sagebrush) …

Molecular Mapping Of Qtls For Domestication-Related Traits In Cowpea (V. Unguiculata (L.) Walp.), Mebeaselassie Andargie, Remy S. Pasquet, Bhavani S. Gowda, Geoffrey M. Muluvi, Michael P. Timko

All Peer-Reviewed Publications

Understanding the genetic basis underlying domestication-related traits (DRTs) of cowpea (Vigna unguiculata (L.) Walp.) is important since the genome has experienced divergent domestication and in addition it is also useful to utilize the wild germplasm efficiently for improving different traits of the cultivated cowpea. Quantitative trait loci (QTLs) for DRTs were identified in a population of 159 F7 recombinant inbred lines derived from a cross between a domesticated cowpea (V. unguiculata (L.) Walp.) variety, 524B, and a wild accession, 219. Using the constructed linkage map, QTLs for 10 DRTs were analysed and mapped. QTLs for seed, pod and flower related …

Summary Of Raptor Banding Efforts At Hitchcock Nature Center, Fall 2014, Jerry Toll

Nebraska Bird Review

The 2014 season was by far the most unusual and frustrating season since the inception of raptor banding and hawk watch at the Hitchcock Nature Center in Pottawatomie County, Iowa, just north of Crescent. Banding diurnal raptors commenced on September 7th on schedule. The month of September was typical as far as capture rates and weather systems, although we were stymied somewhat by the lack of availability of European Starlings for lure birds. House Sparrows proved a nearly adequate substitute.

During the peak period of October, weather systems that drive diurnal raptor migration worked against monitoring efforts by forcing migration …

Fall Field Report, August–November 2014, W. Ross Silcock

Nebraska Bird Review

My first paragraph from last year's fall report read as follows: "In most ways, this was a routine fall season. Most interesting from an ongoing point of view were quite a large number of sightings of passerines at rather late dates, notably among Empidonax flycatchers, wood warblers, native sparrows, tanagers, towhees, grosbeaks, and buntings." This fall was no different; the trend seems to be that final sighting dates for many species are pushing against their latest expected dates.

There were several tidbits of interest, more or less unrelated, but perhaps most notable takeaways for the season were the number of …

Nebraska Bird Review (December 2014) 82(4), Whole Issue

Nebraska Bird Review

Fall Field Report, August–November 2014 ... 150

Holdrege Fall Field Days … 181

Summary of Raptor Banding Efforts at Hitchcock Nature Center, Fall 2014 ... 186

First Documented Nest of Northern Saw-whet Owl in Nebraska ... 189

In Memory of Margaret Triplett … 194

Index to Volume 82 … 195

Subscription and Organization Information ... 207

Earthworm, Microbial Biomass, And Leaf Litter Decay Responses After Invasive Honeysuckle Shrub Removal From Urban Woodlands., Robert Preston Pipal

Electronic Theses and Dissertations

Invasive species are one of the leading causes of biodiversity loss and their presence can significantly impact the structure and function of native ecosystems. In this dissertation, the impacts of the invasive honeysuckle shrub, Lonicera maackii, on exotic earthworm populations, leaf litter decay responses, and inorganic and organic nutrient pools in an urban woodland park are assessed. Chapter 1 provides a brief review of honeysuckle's effects on forest ecosystems. Chapter 2 describes honeysuckle’s effects on exotic earthworm populations and the seasonal importance of macroinvertebrates to leaf litter decomposition in urban woodlands. This study revealed that L. maackii promoted higher exotic …

Evaluation Of Low-Tannin Grain Sorghum In Broiler Chicken Diets, Samantha Aniecia Shelton

Graduate Theses and Dissertations

Research trials were conducted to evaluate the effects of different levels of dietary grain sorghum on broiler live performance, carcass yield and shank (leg) and breast skin coloring. Iso-caloric diets were formulated where sorghum replaced corn at rates of 0% (control), 20, 40, 60, 80 and 100% for a total of 6 diets. For each of the two trials, 1500 Cobb 500 male broiler chicks were randomly allocated to 60 pens with 25 birds per pen (10 pens/diet) and grown to 46 days for the first research trial and 41 days for the second. There were no differences (P>.05) …

Protein Turnover In Broiler, Layers, And Broiler Breeders, Karen Vignale Lake

Graduate Theses and Dissertations

Protein turnover in skeletal tissue for broiler breeders has shown to increase at sexual maturity and then decline with increased egg production. Regarding broiler chickens the industry is facing two situations that need to be clarified: the appearance of white stripes in birds over 56 days of age and the positive effect in breast meat yield that supplementation of 25OH-D3 is causing. A series of studies were conducted to determine the effect of sexual maturity in protein turnover in broiler breeders and laying hens and to understand the effect of 25OHD3 in breast meat yield in broiler chickens and why …

Evaluation Of Phytate And Phytase Interactions And Phytase Phase-Feeding On Bird Performance, Bone Characteristics And Meat Quality In Young Growing Broilers, Chance L. Williams

Graduate Theses and Dissertations

Two trials were performed using one-day-old male Cobb x Cobb 500 broilers to determine how dietary phytate and phytase levels as well as phytase phase feeding impacted bird performance parameters, tibia characteristics, and malonaldehyde (MDA) content of the liver, breast and thigh tissues. The first experiment consisted of 1,008 birds randomly placed in 48 floor pens within two commercial broiler houses at the Applied Broiler Research Farm (ABRF; 21 birds per pen; 0.76 ft2 per bird). A 2 X 3 factorial design was used with two levels of dietary phytate (0.21 and 0.31 %) and three levels of phytase supplementation …

Ospreys (Pandion Haliaetus) In The 21st Century: Populations, Migration, Management, And Research Priorities, Richard O. Bierregaard, Alan F. Poole, Brian E. Washburn

United States Department of Agriculture Wildlife Services: Staff Publications

Ospreys (Pandion haliaetus) are remarkable raptors. Their choice of conspicuous nest sites and surprising tolerance for nesting in nearly intimate association with humans render them an iconic piece of aquatic ecosystems in both marine and freshwater habitats across the northern hemisphere and much of Australasia (Australia to Indonesia). Wintering in Central and South America and Africa as well, they are among the few truly cosmopolitan birds of prey. Ecologically, they might be termed generalized specialists. They are, with exceptions so rare that they can safely be ignored, obligate fish eaters. From their talons to the tip of their …

Breathing Life Into Fisheries Stock Assessments With Citizen Science, David V. Fairclough, Jamin I. Brown, B J. Carlish, Brett M. Crisafulli, Ian S. Keay

Fisheries Research Articles

Citizen science offers a potentially cost-effective way for researchers to obtain large data sets over large spatial scales. However, it is not used widely to support biological data collection for fisheries stock assessments. Overfishing of demersal fishes along 1,000 km of the west Australian coast led to restrictive management to recover stocks. This diminished opportunities for scientists to cost-effectively monitor stock recovery via fishery-dependent sampling, particularly of the recreational fishing sector. As fishery-independent methods would be too expensive and logistically-challenging to implement, a citizen science program, Send us your skeletons (SUYS), was developed. SUYS asks recreational fishers to voluntarily donate …

Population Genetics Of Seaside Sparrow (Ammodramus Maritimus) Subspecies Along The Gulf Of Mexico., Stefan Woltmann, Phillip C. Stouffer, Christine M. Bergeon Burns, Mark S. Woodrey, Mollie F. Cashner, Sabrina S. Taylor

CREC Publications

Seaside Sparrows (Ammodramus maritimus) along the Gulf of Mexico are currently recognized as four subspecies, including taxa in Florida (A. m. juncicola and A. m. peninsulae) and southern Texas (Ammodramus m. sennetti), plus a widespread taxon between them (A. m. fisheri). We examined population genetic structure of this "Gulf Coast" clade using microsatellite and mtDNA data. Results of Bayesian analyses (Structure, GeneLand) of microsatellite data from nine locations do not entirely align with current subspecific taxonomy. Ammodramus m. sennetti from southern Texas is significantly differentiated from all other populations, but we found evidence of an admixture zone with A. m. …

Variability In The Spatial And Temporal Patterns Of Larval Scombrid Abundance In The Gulf Of Mexico, Sennai Y. Habtes

USF Tampa Graduate Theses and Dissertations

Accurate fishery-independent methods for assessing the abundance of marine fish stocks are important tools for proper pelagic fisheries management. The review and improvement of standardized sampling methods used in fisheries-independent sampling, and the establishment of improved models of abundance and population dynamics utilizing novel statistical techniques for fisheries management will further improve our understanding of the way in which marine fish stocks vary spatially and temporally. One of the most important and longest running surveys of fisheries-independent data in the Southeastern United States is the spring ichthyoplankton survey conducted through the Southeast Area Mapping and Assessment Program (SEAMAP).

These surveys …

Glucose Significantly Enhances Enterotoxigenic Escherichia Coli Adherence To Intestinal Epithelial Cells Through Its Effects On Heat-Labile Enterotoxin Production, Prageeth Wijemanne, Rodney A. Moxley

School of Veterinary and Biomedical Sciences: Faculty Publications

The present study tested whether exposure of enterotoxigenic Escherichia coli (ETEC) to glucose at different concentrations in the media results in increased bacterial adherence to host cells through increased heat-labile enterotoxin (LT) production, thereby suggesting the effects are physiological. Porcine-origin ETEC strains grown in Casamino acid yeast extract medium containing different concentrations of glucose were washed and inoculated onto IPEC-J2 porcine intestinal epithelial cells to test for effects on adherence and host cell cAMP concentrations. Consistent with previous studies, all LT+ strains had higher ETEC adherence to IPEC-J2 cells than did LT2 strains. Adherence of the LT2 but not the …

Pathogenic Landscape Of Transboundary Zoonotic Diseases In The Mexico–Us Border Along The Rio Grande, Maria Dolores Esteve-Gassent, Adalberto A. Pérez De León, Dora Romero-Salas, Teresa Patricia Feria-Arroyo, Ramiro Patino, John A. Goolsby

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Transboundary zoonotic diseases, several of which are vector borne, can maintain a dynamic focus and have pathogens circulating in geographic regions encircling multiple geopolitical boundaries. Global change is intensifying transboundary problems, including the spatial variation of the risk and incidence of zoonotic diseases.The complexity of these challenges can be greater in areas where rivers delineate international boundaries and encompass transitions between ecozones.The Rio Grande serves as a natural border between the US State ofTexas and the Mexican States of Chihuahua, Coahuila, Nuevo León, andTamaulipas. Not only do millions of people live in this transboundary region, but also a substantial amount …

Performance Of A Temperate-Zone Channel Catfish Biofloc Technology Production System During Winter, Bartholomew W. Green

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Channel catfish (Ictalurus punctatus) have been grown successfully in an outdoor biofloc technology production system. Outdoor biofloc production systems in the tropic sare operated year-round, whereas the channel catfish studies were conducted only during the growing season and biofloc production tanks were harvested and idled for the winter. If an outdoor biofloc production system is to be adopted by farmers at temperate latitudes, then data gaps related to system and fish performance over the winter must be addressed. The present study was conducted to address these data gaps for channel catfish culture. Waters from a recently completed biofloc …

Data For Henson Et Al. 2014, Shandelle M. Henson, James L. Hayward, Gordon Atkins, Amanda Sandler, Wadenerson Saint Martin

Faculty Publications

These data are archived for the paper "Changing sea surface temperature alters timescale of reproductive synchrony in seabirds" by Henson et al., currently submitted to Nature.