Animal Sciences Commons^™

The Development Of New Molecular Tools To Detect Mycobacterium Avium Subspecies Paratuberculosis From A Bovine Faecal Environment By Real-Time Pcr, Marcel De Kruijf

Theses

The slow-growing intracellular pathogen Mycobacterium avium subspecies paratuberculosis (MAP) causes Johne’s disease in domesticated and wild ruminants. Johne’s disease inflicts severe annual economic losses to the dairy industry worldwide. This thesis is divided into five chapters that consist of a literature review' chapter and four experimental chapters focusing on MAP strain genotyping and the development of novel molecular MAP detection tools using real-time PCR. Chapter 1 describes published information regarding MAP characteristics, Johne’s disease, MAP genomes, available MAP detection methods, MAP epidemiology and genotyping.

To efficiently control and monitor MAP infection, molecular t>ping of MAP strains provides extensive knowledge …

Habitat Use By Wintering Passerines In Fire-Managed Forests Along The U.S. Gulf Coast, Justin Michael Michaud

Online Theses and Dissertations

Coastal habitats are being impacted by land development, fragmentation, and disturbance related to climate change. The remaining natural areas need to use planned management that may, in some cases, include the use of prescribed fire to maintain habitat quality. Numerous species of passerines, including some with declining populations, use the Gulf Coast as a wintering area, and some depend on habitats managed by fire. To provide information for land managers, I studied the winter bird community at Naval Live Oaks in Gulf Islands National Seashore with two primary objectives: (1) to describe the distribution, abundance, and diversity of the non-breeding …

Local Impacts Of White-Nose Syndrome On The Foraging Ecology Of Insectivorous Bats, Shelby Fulton

Online Theses and Dissertations

Lepidoptera are a core resource for many of North America's insectivorous bats. These predators consume Lepidoptera of varying sizes, and some bat species remove the wings prior to consumption. Selection of larger prey and subsequent wing removal may allow bats to optimize the energetic value afforded by Lepidoptera. In Chapter 1, I explore the relationships between caloric yield, body size, and wing presence. Laboratory-reared Trichoplusia ni moths were grouped into large and small size classes, and wings were removed from half the moths in each size class. Bomb calorimetry was used to determine the gross heat (cal/g) of moths in …

Analysis Of Metabolites In The Urine Of Mice With Tyrosinemia Type 1 Using Nmr And Ms, Flora Eason

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.

Striped Tail Darter Project, Zeina Sleiman

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.

Distribution Of The North American Porcupine (Erethizon Dorsatum) In Northern California, Cara L. Appel, William J. Zielinski, Frederick V. Schlexer, Richard Callas, Tim Bean

Open Educational Resources

Western Wildlife 4:17–28, 2017: The North American Porcupine (Erethizon dorsatum) is one of the most widely distributed mammals in North America, but recent reports have suggested declines in parts of its range in the West. In California, little is known about the historical or current status of the porcupine, and maps of its distribution conflict considerably. Nevertheless, the species is of interest to natural resource managers. For much of the 1900s, foresters and others primarily treated porcupines as pests because of the undesirable damage they inflict feeding on trees and gnawing on manmade items in search of salt. …

Department Of Fisheries Annual Report To Parliament 2016/17, Government Of Western Australia Department Of Fisheries

Department of Fisheries Annual Reports

This annual report provides an overview of the Department and its operations for the financial year ended 30 June 2017. It has been prepared in accordance with the requirements of the Financial Management Act 2006, the Fish Resources Management Act 1994 and the Public Sector Commission’s Annual reporting framework – 2016/17 reporting year.

Genomic Perspectives On Amphibian Evolution Across Multiple Phylogenetic Scales, Paul Michael Hime

Theses and Dissertations--Biology

Genomes provide windows into the evolutionary histories of species. The recent accessibility of genome-scale data in non-model organisms and the proliferation of powerful statistical models are now providing unprecedented opportunities to uncover evolutionary relationships and to test hypotheses about the processes that generate and maintain biodiversity. This dissertation work reveals shallow-scale species boundaries and population genetic structure in two imperiled groups of salamanders and demonstrates that the number and information content of genomic regions used in species delimitation exert strong effects on the resulting inferences. Genome scans are employed to test hypotheses about the mechanisms of genetic sex determination in …

Spatially Biased Dispersal Of Acorns By A Scatter-Hoarding Corvid May Accelerate Passive Restoration Of Oak Habitat On California’S Largest Island, Mario B. Pesendorfer, T. Scott Sillett, Scott A. Morrison

School of Biological Sciences: Faculty Publications

Scatter hoarding by corvids (crows, jays, magpies, and nutcrackers) provides seed dispersal for many large-seeded plants, including oaks and pines. When hoarding seeds, corvids often choose nonrandom locations throughout the landscape, resulting in differential survival of seeds. In the context of habitat restoration, such disproportional storing of seeds in areas suitable for germination and establishment can accelerate expansion and recovery of large-seeded tree populations and their associated ecosystems. Here, we investigate the spatial preferences of island scrub jays Aphelocoma insularis during scatter hoarding of acorns (Quercus spp.) on Santa Cruz Island. We use a large behavioral data set on …

Rewiring Metabolism Under Oxygen Deprivation: Naked Mole-Rats Evolved A Means To Cope With Anoxia, Jay F. Storz, Grant B. Mcclelland

Jay F. Storz Publications

When faced with a reduced availability of oxygen in the environment (hypoxia), vertebrates can make a variety of respiratory, cardiovascular, and hematological adjustments to ensure an uninterrupted supply of oxygen to the cells of metabolizing tissues (1, 2). These are adaptive solutions for “aerobic organisms in an aerobic world” (3). Coping with the complete absence of oxygen (anoxia) requires more fundamental alterations of cellular metabolism that are typically nothing more than emergency stopgap measures to buy time until the oxygen supply is (hopefully) reestablished (4). On page 307 of this issue [Science 356 (6335)], Park et al. (5) identify a …

Biotic Interchange Has Structured Western Hemisphere Mammal Communities, Danielle Fraser, S. Kathleen Lyons

School of Biological Sciences: Faculty Publications

Aim.— Many hypotheses posit that species-rich tropical communities are dominated by speciesspecies interactions, apparent as competitive exclusion or character displacement, whereas species-poor temperate communities are dominated by species-environment interactions. Recent studies demonstrate a strong influence of macroevolutionary and biogeographic factors. We simultaneously test for the effects of species interactions, climate, and biotic interchange on Western Hemisphere mammal communities using a phylogenetic and functional diversity approach.

Location.— Western Hemisphere.

Time period.— Modern

Major taxa studied.— Mammalia

Methods.— Using Western Hemisphere mammal distributional and body mass data, we calculate body mass dispersion, phylogenetic diversity (Net Relatedness Index), and assemblage-averaged rates of co-occurrence …

Survey Gear Comparisons And Shark Nursery Habitat Use In Southeast Georgia Estuaries, Jeffrey Cohen Carpenter

UNF Graduate Theses and Dissertations

Gill nets and longlines were compared as shark nursery sampling methodologies in inshore waters of Georgia to (1) assess differences in gear selectivity, bias, and stress of capture and (2) determine potential relationships between habitat features and shark distribution and abundance. Gear selectivity varied between gears as a function of both species and life stage resulting in significantly different estimates of species and life stage compositions. Juvenile bonnetheads (Sphyrna tiburo) and young of the year blacktip sharks (Carcharhinus limbatus) experienced significantly higher stress from gill net capture than longline. Major sources of bias are thought to …

The Status Of Snapping Turtles (Chelydra Serpentina) In Virginia: Population Viability, Demography, Regulatory Analysis, And Conservation, Benjamin C. Colteaux

Theses and Dissertations

Snapping turtles (Chelydra serpentina) are being harvested in unprecedented numbers in the United States (US) to meet the needs of international markets. Over three million live snapping turtles from farm and wild caught stock were exported from the US to Asia in 2012-14 alone. In the Commonwealth of Virginia, records indicate that 29,860 snapping turtles were commercially harvested between 2000 and 2015. Size limits are often used to regulate harvest pressure in snapping turtles and other game species. I analyzed the historic harvest of eleven US states to test the efficacy of minimum-size limit regulations at reducing commercial …

Online Dictionary Of Invertebrate Zoology: Complete Work, Mary Ann Basinger Maggenti, Armand R. Maggenti, Scott L. Gardner (Editor)

Armand R. Maggenti Online Dictionary of Invertebrate Zoology

An exhaustive dictionary of over 13,000 terms relating to invertebrate zoology, including etymologies, word derivations and taxonomic classification. Entries cover parasitology, nematology, marine invertebrates, insects, anatomy, biology, and reproductive processes for the following phyla: Acanthocephala, Annelida, Arthropoda, Brachiopoda, Bryozoa, Chaetognatha, Cnidaria, Ctenophora, Echinodermata, Echiura, Entoprocta, Gastrotricha, Gnathostomulida, Kinorhyncha, Loricifera, Mesozoa, Mollusca, Nematoda, Nematomorpha, Nemertea, Onychophora, Pentastoma, Phoronida, Placozoa, Platyhelminthes, Pogonophora, Porifera, Priapula, Rotifera, Sipuncula, and Tardigrada.

Comparative Water Quality And Channel Catfish Production In Earthen Ponds And A Biofloc Technology Production System, Bartholomew W. Green, Matthew E. Mcentire

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

This 210-day study compared variation in water quality and fish growth for channel catfish (Ictalurus punctatus; 47 g/fish) stocked in earthen ponds (1.5 fish/m², 14,820/ha) and in a biofloc technology (BFT) production system with high-density polyethylene-lined rectangular tanks (12.6 fish/m², 126,000/ha). Feed input and culture environment affected water-quality dynamics. In ponds, phytoplankton uptake predominated and little nitrification occurred, whereas in the BFT system phytoplankton uptake and nitrification maintained low ammonia-nitrogen concentrations. Size classes of fish were skewed toward the larger market sizes in ponds and toward smaller market sizes in the BFT system. Mean …

Effects And Mechanisms Of Porcine Reproductive And Respiratory Syndrome Virus (Prrsv) Type 1 And Type 2 On The Permeability And Viability Of Porcine Endometrial Epithelial Cells, Dran Rukarcheep

Chulalongkorn University Theses and Dissertations (Chula ETD)

Both PRRSV types 1 and 2 revealed the sign of reproductive disorders associated with a lesion at implantation sites. Impairment of maternal glandular endometrium cell integrity and function by PRRSV infection may impact a proper nourishing fetus. This research was aimed to examine the effects of PRRSV type 1 and type 2 directly on the viability and barrier function of the endometrium using porcine glandular endometrial epithelial cell culture (PEG). The comparison of the route and the strain of PRRSV infection coinciding with their virulent in reproductive epithelia were considered. PEG cells isolated from the 4-6 months old PRRSV-free-herd gilts …

Effects Of Cytokine-Induced Killer Cells On Concanavalin-A Induced Hepatitis In Mouse, Warakorn Srisantisuk

Chulalongkorn University Theses and Dissertations (Chula ETD)

Autoimmune hepatitis (AIH) is a chronic inflammatory disease of liver that the pathogenic mechanisms of AIH have not yet been clarified. All patients with AIH lead to cirrhosis and liver cancer. Presently the best feasible medicines of AIH need aid immunosuppressive medications and liver transplantation which have many side effects, high cost and sustained remission. Thus, immunotherapy is an alternative therapy in which cellular material is injected into a patient. Many previous studies showed cytokine induced killer (CIK) cells, T lymphocytes that have a phenotype of NK cells, have a potential to against several diseases associated with liver. The current …

Managing Sociality Of A Captive Female Bornean Orangutan From Breeding To Post-Partum At The Smithsonian's National Zoo, Marie Vergamini

Theses and Dissertations

The Association of Zoos and Aquariums’ Orangutan Species Survival Plan® aims to maintain 100 Bornean orangutans (Pongo pygmaeus) in captivity. Because investment in breeding these lineages is high, properly managing sociality of potential mothers is essential. This study assessed how behaviors of a captive breeding female at the Smithsonian’s National Zoo changed from pre-gestation through the offspring’s sixth month of age to improve breeding recommendations.

The infant Bornean orangutan was born September 2016. Results indicate that during breeding, the mother socialized most with two adult females. During pregnancy, the pregnant female socialized in less energy-consuming ways, i.e. grooming. …

The North American River Otter (Lontra Canadensis) On The Department Of Energy's Savannah River Site, Emily B. Mccallen

Masters Theses

The Department of Energy's (DOE) Savannah River Site (SRS) faces a legacy of radionuclide and metal contamination from industrial processes that occurred within the site. The risks posed to ecosystems on the site from contaminants are quantified using the ecological risk assessment process, which often uses the health of a particular species as an ecological endpoint. Northern river otters (Lontra canadensis) are appropriate receptors for studying the effects of long-term, low-level contamination because they are long-lived, higher trophic level organisms likely to accumulate high levels of pollutants. However, little information about river otters on the SRS is known; …

Ontogenetic Changes In Nucleic Acid, Protein Contents, And Growthof Larval And Juvenile Japanese Flounder, Xue Hong Tong, Chengman Bao, Xinhui Tang, Xiaolan Yang, Huanli Wang

Turkish Journal of Zoology

In order to estimate relationships among growth potential and biochemical indicators of Japanese flounder, RNA and DNA as well as protein indices were measured from 5 days after hatching (DAH) to 45 DAH. Results showed that the RNA/DNA ratio and protein/DNA ratio had obvious relations with instantaneous growth rate (GM) and length-based instantaneous growth rate (GL) during the premetamorphic period. Significant negative correlations among protein/DNA ratio and GM and GL were then observed during metamorphosis. During the postmetamorphic phase, the RNA/DNA ratio was positively correlated with GM and GL. Data indicated that body growth of Japanese flounder is mostly hyperplastic …

New Records Of Springtail Fauna (Hexapoda: Collembola: Entomobryomorpha)From Ordu Province In Turkey, Muhammet Ali̇ Özata, Hasan Sevgi̇li̇, Igor J. Kaprus

Turkish Journal of Zoology

This study aims to elucidate the Collembola fauna of the province of Ordu, which is situated between the Middle and Eastern Black Sea regions of Turkey. Although a large number of Collembolan specimens had been collected, only Entomobryomorpha species were given emphasis. From 44 different sampled localities of the province of Ordu, we recorded 6 families, 14 genera, and 28 species. Six of these species were previously recorded and 20 of them are new records for Turkey. The results were not surprising, considering that the sampled region had not been studied previously, quite like many habitats in Turkey. With our …

Anatrachyntis Badia (Hodges, 1962) (Lepidoptera: Cosmopterigidae): The First Report From Turkey And A Case Of Importation To Poland, Lukasz Dawidowicz, Robert Rozwa?Ka

Turkish Journal of Zoology

Anatrachyntis badia (Hodges, 1962) (Lepidoptera: Cosmopterigidae) is an opportunistic species native to the southern part of North America. This species was given from several dozens of plants therein from many cultivable plants, such as limes, grapefruits, bananas, peaches, cabbage, blossoms of coconut, Cycas spp., and even pine cones. Thus, it was accidentally introduced to many other countries with appropriate climate with some plants. It can be considered as a plant pest in some cases (e.g., sorghum). The species quite often occurs conjointly with other pest insects, such as mealybug or honeydew moth Cryptoblabes gnidiella (Milliere, 1867) (Lepidoptera: Pyralidae). This paper …

Dna Sequencing Of Digenea Nuclear Lsrdna Of The Whiskered Brown Bat,Myotis Aurescens (Vespertilionidae: Chiroptera), From Turkey, Nurhan Sümer, Hi̇kmet Sami̇ Yildirimhan

Turkish Journal of Zoology

Six species of Trematoda (Prosthodendrium ascidia, Prosthodendrium longiforme, Lecithodendrium linstowi, Plagiorchis muelleri, Plagiorchis vespertilionis, and Plagiorchis koreanus) of Myotis aurescens from Bursa Province, Turkey, were examined for DNA sequencing of the 28S ribosomal gene region. A partial sequence of the 28S ribosomal gene from digenean species was studied using BLAST and found to be a useful region for helminth species diagnosis.

A Taxonomic Study On The Families Lecanidae And Lepadellidae (Rotifera: Monogononta) Of Turkey And Three New Records For Turkish Inland Waters, Ahmet Bozkurt

Turkish Journal of Zoology

In this study, 39 rotifer species from the families Lecanidae and Lepadellidae were identified after examination of samples collected from 47 different localities in Turkey. Lecane acanthinula, L. thalera, and L. unguitata are new records for the Turkish rotifer fauna.

Two New Records For Turkish Geometridae (Lepidoptera) Fauna From Ordu Province, Mustafa Özdemi̇r

Turkish Journal of Zoology

In this study, a group of specimens from the family Geometridae preserved in the Nazife Tuatay Plant Protection Museum is examined. The specimens were originally collected from Ordu, Turkey. As a result of this work, two new records for the Geometridae fauna of Turkey, namely Asthena anseraria (Herrich-Schaffer, [1855]) and Eupithecia selinata Herrich-Schaeffer, 1861 are given. Adult and genitalia figures of the species are presented.

Morphological And Molecular Characterization And Phylogenetic Position Of A Newrecord, Tylenchorhynchus Zeae, And Some Known Species Of Telotylenchidae Siddiqi,1960 And Merliniidae Siddiqi, 1971 From Iran, Somaye Alvani, Esmat Mahdikhani Moghaddam, Hamid Rouhani, Abbas Mohammadi

Turkish Journal of Zoology

In order to identify the plant-parasitic nematodes associated with Berberis vulgaris, Crocus sativus, and Ziziphus zizyphus, 360 soil samples were collected from the rhizosphere of these plants in the South Khorasan Province of Iran during 2012-2014. Among the identified species, Tylenchorhynchus zeae Sethi and Swarup, 1968 of Telotylenchidae Siddiqi, 1960 is a new record from Iran and the isolate is described and illustrated based on morphological, morphometric, and molecular characteristics. The phylogenetic tree inferred from partial sequences of the 28S rRNA (D2D3 segments) grouped the Iranian isolate with other T. zeae sequences, forming a strongly supported clade (Bayesian posterior probability: …

Comparison Of Trophic Structure Of The Benthic Macroinvertebratesin Three Bulgarian Riverine Water Bodies, Maria Kerakova, Yordan Uzunov, Emilia Varadinova

Turkish Journal of Zoology

The trophic structure of benthic macroinvertebrates in three different types of running water bodies subjected to varying degrees of anthropogenic pressure was analyzed. A seasonal survey was conducted at three Bulgarian rivers in 2011. An adapted version of the multihabitat sampling method was applied along with measuring physical and chemical variables. The ecological status was defined by means of biotic and trophic indexes. Distribution of the functional feeding groups shows that the most sensitive groups, shredders and scrapers, dominate the trophic structure of the mountain river types. In contrast, groups of deposit feeders and filterers prevail at the foothill and …

Current Status Of Coral Reefs In Tioman Island, Peninsular Malaysia, Saad Shahbudin, Khodzori Fikri Akmal, Salleh Faris, Mohammad-Noor Normawaty, Yukinori Mukai

Turkish Journal of Zoology

The present study aimed to determine the current status of corals using the coral video transect (CVT) method in the east coast, west coast, and isolated areas of Tioman Island, Peninsular Malaysia. A total of 65 genera from 21 families of corals were identified, from which the scleractinian corals of Acropora, Montipora, and Porites were dominant in the coral assemblages. Nine reef sites were categorised as having 'good' (51.4%-60.3%) coral condition and four reef sites as having 'fair' (37.6%-49.2%) coral condition. This study concluded that the reefs around Tioman Island were in 'good' average coral condition and have high generic …

New Data On Hahnia C.L. Koch, 1841 From Crimea (Aranei: Hahniidae), Mykola Kovblyuk, Zoya Kastrygina, Yuri Marusik

Turkish Journal of Zoology

Four species of Hahnia are recorded from Crimea: H. helveola Simon, 1875; H. nava (Blackwall, 1841); H. ononidum Simon, 1875; and H. pusilla C.L. Koch, 1841. Two species, namely H. ononidum and H. pusilla, are recorded from Crimea for the first time. Crimea is the easternmost point of the known range for H. helveola. Illustrations, diagnoses, distribution data, habitats, and seasonal dynamics of activity are presented.

The Blood Sucking Lice (Phthiraptera: Anoplura) Of Croatia: Review And New Data, Stjepan Krcmar, Tomi Trilar

Turkish Journal of Zoology

The present faunistic study of blood sucking lice (Phthiraptera: Anoplura) has resulted in the recording of the 4 species: Hoplopleura acanthopus (Burmeister, 1839); Ho. affinis (Burmeister, 1839); Polyplax serrata (Burmeister, 1839), and Haematopinus apri Goureau, 1866 newly reported for the fauna of Croatia. Thirteen species and 2 subspecies are currently known from Croatia, belonging to 6 families. Linognathidae and Haematopinidae are the best represented families, with four species each, followed by Hoplopleuridae and Polyplacidae with two species each, Pediculidae with two subspecies, and Pthiridae with one species. Blood sucking lice were collected from 18 different host species. Three taxa, one …