Animal Sciences Commons^™

Block And Bridle Annual 2018, Unl Animal Science Block And Bridle 2018 Team

Block and Bridle Annual (1933–2021)

As a club in the department we are very fortunate to have livestock handling facilities on campus and the opportunities to utilize the facility for livestock judging, Little AKSARBEN, and other events held by the club. I would also like to add that in the spring of 2021, the club will have the opportunity to show case the Animal Science Department and the various livestock sectors of Nebraska, by hosting the 101st National Block and Bridle Convention. We have a group of young ladies who are excited to take on the challenge of planning a convention of this magnitude. They …

Wpa News 107 (2018), World Pheasant Association

Galliformes Specialist Group and Affiliated Societies: Newsletters

WPA News (Winter 2018), number 107

Published by the World Pheasant Association

Galliformes Taxon Advisory Group: Aza Regional Collection Plan, Third Edition, 2018-2023, Association Of Zoos And Aquariums

Galliformes Specialist Group and Affiliated Societies: Reports and Other Materials

Galliformes Taxon Advisory Group: AZA Regional Collection Plan, Third Edition, 2018-2023 / Association of Zoos and Aquariums

TAG mission statement

TAG vision statement

Leadership and TAG structure

TAG History and Introduction

TAG goals, 2018-2023

Rearing-lifelong welfare

Private sector-TAG relations

TAG definition

Taxonomy

Conservation

Conservation status table of all Galliformes

Species selection criteria

Species selection decision tree

Recommended species summary

Space assessment

Animal program summary table

Replacement tables

Family: Megapodiidae (brush-turkey, megapode, scrubfowl)

Maleo Macrocephalon maleo

Non-recommended species justification and suggested replacement species

Family: Cracidae (chachalacas, guans, and curassows)

Horned guan Oreophasis derbianus

Blue-billed curassow Crax alberti

Wattled curassow Crax globulosa …

Conservation Limnogeology And Benthic Habitat Mapping In Central Lake Tanganyika (Tanzania), Joseph S. Lucas

Theses and Dissertations--Earth and Environmental Sciences

Small scale protected zones are valuable for helping the health and productivity of fisheries at Lake Tanganyika (East Africa). Spatial placement of protected areas relies on accurate maps of benthic habitats, consisting of detailed bathymetry data and information on lake-floor substrates. This information is unknown for most of Lake Tanganyika. Fish diversity is known to correlate with rocky substrates in ≤ 30 m water depth, which provide spawning grounds for littoral and pelagic species. These benthic habitats form important targets for protected areas, if they can be precisely located.

At the NMVA, echosounding defined the position of the 30-m isobath …

Climate Change, Cattle, And The Challenge Of Sustainability In A Telecoupled System In Africa, Tara S. Easter, Alexander K. Killion, Neil H. Carter

Ecology, Evolution, and Behavior

Information, energy, and materials are flowing over greater distances than in the past, changing the structure and feedbacks within and across coupled human and natural systems worldwide. The telecoupling framework was recently developed to understand the feedbacks and multidirectional flows characterizing social and environmental interactions between distant systems. We extend the application of the telecoupling framework to illustrate how flows in beef affect and are affected by social-ecological processes occurring between distant systems in Africa, and how those dynamics will likely change over the next few decades because of climate-induced shifts in a major bovine disease, trypanosomosis. The disease is …

Seasonal Fluctuations Of Zooplankton, Dissolved Oxygen, And Temperature In Lake Bemidji, Minnesota, Cody Coyle

Journal of Earth and Life Science

With the current influx of aquatic invasive species in Minnesota lakes, the status of zooplankton has become vital. Zooplankton are at the base of all food chains in aquatic ecosystems, ecosystems that vary greatly throughout a year’s time. The objectives of this study were to 1) track the location of zooplankton throughout the water column for an entire year, and 2) establish relationships between zooplankton location and specific water column characteristics. Zooplankton, dissolved oxygen, and temperature samples were collected bi-monthly at various depths at the deepest point in the southern basin of Lake Bemidji. Zooplankton were most abundant in the …

Age-0 Walleye Growth Rates Following Spiny Water Flea Bythotrephes Longimanus Invasion, Joseph Amundson

Journal of Earth and Life Science

Within Voyageurs National Park, spiny water flea Bythotrephes longimanus has reduced Lake Kabetogama and Rainy Lake native zooplankton biomass during summer peak by 40-60%. Subsequently, planktivorous age-0 Yellow Perch Perca flavescens growth has decreased. A possible trophic cascade may influence predatory fish growth rates like that of age-0 Walleye Sander vitreus. Using seine net and electrofishing data, age-0 Walleye growth rates were modeled as a linear function of growing degree days (GDD) and the slope was compared between pre- and post-spiny water flea establishment. Nearby Lake Vermilion, assumed to have been unaffected by spiny water flea until 2015 and …

Burbot Activity In Relation To Light Penetration On Lake Bemidji, Mn, Hunter Weidenborner, Josh Janecek

Journal of Earth and Life Science

Burbot Lota lota is the only freshwater member of the family Gadidae and has a circumpolar distribution in cold-water regions. Information related to Burbot biology is limited in comparison to most fishes. Snow pack depth and ice conditions influence light penetration and therefore primary production levels. Primary production can have cascading effects on higher trophic levels. Therefore, the objective of this study was to observe if light levels penetrating through cleared and covered ice has an effect on Burbot activity in Lake Bemidji, MN. Angling for Burbot occurred for a minimum of 30 four hour sample periods at both cleared …

Rumen Bacterial Community Structure Impacts Feed Efficiency In Beef Cattle, Henry A. Paz, Kristin E. Hales, James E. Wells, Larry A. Kuehn, Harvey C. Freetly, Elaine D. Berry, Michael D. Flythe, Matthew L. Spangler, Samodha C. Fernando

Department of Animal Science: Faculty Publications

The importance of the rumen microbiota on nutrient cycling to the animal is well recognized; however, our understanding of the influence of the rumen microbiome composition on feed efficiency is limited. The rumen microbiomes of two large animal cohorts (125 heifers and 122 steers) were characterized to identify specific bacterial members (operational taxonomic units [OTUs]) associated with feed efficiency traits (ADFI, ADG, and G:F) in beef cattle. The heifer and steer cohorts were fed a forage-based diet and a concentrate-based diet, respectively. A rumen sample was obtained from each animal via esophageal tubing and bacterial community composition was …

Using Single Molecule Mrna Fluorescent In Situ Hybridization (Rna-Fish) To Quantify Mrnas In Individual Murine Oocytes And Embryos, Fang Xie, Kelsey A. Timme, Jennifer R. Wood

Department of Animal Science: Faculty Publications

Changes in abundance of mRNAs during oocyte growth and maturation and during pre-implantation embryo development have been documented using quantitative real-time RT-PCR (qPCR), microarray analyses, and whole genome sequencing. However, these techniques require amplification of mRNAs, normalization using housekeeping genes, can be biased for abundant transcripts, and/or require large numbers of oocytes and embryos which can be difficult to acquire from mammalian species. We optimized a single molecule RNA fluorescence in situ hybridization (RNA-FISH) protocol, which amplifies fluorescence signal to detect candidate transcripts, for use with individual oocytes and embryos. Quantification using the software Localize showed patterns of Gdf9 and …

Effects Of Dietary Supplementation Of Formaldehyde And Crystalline Amino Acids On Gut Microbial Composition Of Nursery Pigs, H. E. Williams, R. A. Chochrane, J. C. Woodworth, J. M. Derouchey, S. S. Dritz, M. D. Tokach, C. K. Jones, S. C. Fernando, Thomas E. Burkey, Y. S. Li, R. D. Goodband, R. G. Amachawadi

Department of Animal Science: Faculty Publications

Formaldehyde-based feed additives are approved in the US for Salmonella control and reducing bacterial contamination in animal feed. However, we hypothesize formaldehyde inclusion in swine diets may influence gut microbial composition due to its antimicrobial properties which might negatively influence microbial populations and pig growth performance. Also, formaldehyde inclusion in diets is known to reduce the dietary availability of amino acids. Therefore, our study was conducted to characterize if the effects of feed formaldehyde-treatment are due to influences on microbial population or diet amino acid (AA) sources. Dietary treatments were arranged in a (2 × 2) + 1 factorial with …

Synaptogyrin-2 Influences Replication Of Porcine Circovirus 2, Lianna R. Walker, Taylor B. Engle, Hiep Vu, Emily R. Tosky, Dan J. Nonneman, Timothy P. L. Smith, Tudor Borza, Thomas E. Burkey, Graham S. Plastow, Stephen D. Kachman, Daniel C. Ciobanu

Department of Animal Science: Faculty Publications

Porcine circovirus 2 (PCV2) is a circular single-stranded DNA virus responsible for a group of diseases collectively known as PCV2 Associated Diseases (PCVAD). Variation in the incidence and severity of PCVAD exists between pigs suggesting a host genetic component involved in pathogenesis. A large-scale genome-wide association study of experimentally infected pigs (n = 974), provided evidence of a host genetic role in PCV2 viremia, immune response and growth during challenge. Host genotype explained 64% of the phenotypic variation for overall viral load, with two major Quantitative Trait Loci (QTL) identified on chromosome 7 (SSC7) near the swine leukocyte antigen complex …

Effects Of Syngenta Enogen Feed Corn Containing An Α-Amylase Trait On Finishing Cattle Performance And Carcass Characteristics, M. L. Jolly-Breithaupt, M. E. Harris, B. L. Nuttelman, D. B. Burken, J. C. Macdonald, M. K. Leubbe, T. K. Iragavarapu, G. E. Erickson

Department of Animal Science: Faculty Publications

Two experiments evaluated the effects of feeding a new corn hybrid, containing an α-amylase enzyme trait, Syngenta Enogen Feed Corn (SYT-EFC), on feedlot performance and carcass characteristics at two locations. Experiment 1 utilized 300 calffed steers (298.5 ± 16.3 kg of BW) at the University of Nebraska–Lincoln Eastern Nebraska Research and Extension Center Mead, NE. Treatments were designed as a 2 × 2 + 1– factorial arrangement with factors consisting of 1) corn type (SYT-EFC or conventional [CON]) and 2) byproduct type (with or without Sweet Bran [SB]), or a BLEND of STY-EFC and CON without SB. In Exp. 2, …

Improved Reference Genome For The Domestic Horse Increases Assembly Contiguity And Composition, Theodore S. Kalbfleisch, Edward S. Rice, Michael S. Depriest Jr., Brian P. Walenz, Matthew S. Hestand, Joris R. Vermeesch, Brendan L. O'Connell, Ian T. Fiddes, Alisa O. Vershinina, Nedda F. Saremi, Jessica L. Petersen, Carrie J. Finno, Rebecca R. Bellone, Molly E. Mccue, Samantha A. Brooks, Ernest Bailey, Ludovic Orlando, Richard E. Green, Donald C. Miller, Douglas F. Antczak, James N. Macleod

Department of Animal Science: Faculty Publications

Recent advances in genomic sequencing technology and computational assembly methods have allowed scientists to improve reference genome assemblies in terms of contiguity and composition. EquCab2, a reference genome for the domestic horse, was released in 2007. Although of equal or better quality compared to other first-generation Sanger assemblies, it had many of the shortcomings common to them. In 2014, the equine genomics research community began a project to improve the reference sequence for the horse, building upon the solid foundation of EquCab2 and incorporating new short-read data, long-read data, and proximity ligation data. Here, we present EquCab3. The count of …

Genome-Wide Association Study Of Stayability And Heifer Pregnancy In Red Angus Cattle, S. E. Speidel, B. A. Buckley, R. J. Boldt, R. M. Enns, J. Lee, Matthew L. Spangler, M. G. Thomas

Department of Animal Science: Faculty Publications

Reproductive performance is the most important component of cattle production from the standpoint of economic sustainability of commercial beef enterprises. Heifer Pregnancy (HPG) and Stayability (STAY) genetic predictions are 2 selection tools published by the Red Angus Association of America (RAAA) to assist with improvements in reproductive performance. Given the importance of HPG and STAY to the profitability of commercial beef enterprises, the objective of this study was to identify QTL associated with both HPG and STAY in Red Angus cattle. A genome-wide association study (GWAS) was performed using deregressed HPG and …

Genome-Wide Association Study For Feed Efficiency Traits Using Snp And Haplotype Models, Kashly Rene Schweer, Stephen D. Kachman, Larry A. Kuehn, Harvey Freetly, John E. Pollak, Matthew L. Spangler

Department of Animal Science: Faculty Publications

Feed costs comprise the majority of variable expenses in beef cattle systems making feed efficiency an important economic consideration within the beef industry. Due to the expense of recording individual feed-intake phenotypes, a genomic-enabled approach could be advantageous toward improving this economically relevant trait complex. A genome-wide association study (GWAS) was performed using 748 crossbred steers and heifers representing seven sire breeds with phenotypes for ADG and ADFI. Animals were genotyped with the BovineSNP50v2 BeadChip containing approximately 54,000 SNP. Both traits were analyzed using univariate SNPbased (BayesC) and haplotype-based (BayesIM) models and jointly using BayesIM to perform a bivariate GWAS. …

Risks Associated To Different Methods Of Increasing Pregnancy Rate Of Cows In Cow-Calf Systems, Tamara Esteves De Oliveira, Julio Otavio Jardim Barcellos, Jack Whittier, Odilene De Souza Teixeira, David Santos De Freitas, Ricardo Pedroso Oaigen, Matheus Dhein Dill, Concepta Mcmanus

Department of Animal Science: Faculty Publications

This study assessed the risks of different management practices to increase pregnancy rate in beef cow-calf systems, aiming at assisting decision-making. The perception of 18 experts on animal sciences regarding the risks of 32 nutritional, breeding, and general management practices applied to increase pregnancy rate were evaluated through questionnaires. The experts were selected by a non-probability sampling of researchers on veterinary and animal sciences. In addition, five farmers and eight technical consultants were also selected. The questionnaire was applied during a face-to-face meeting. The risk of each practice was assessed according to four factors, namely, cost, technical knowledge, operational complexity, …

Rumen Bacterial Composition In Lambs Is Affected By Β-Adrenergic Agonist Supplementation And Heat Stress At The Phylum Level, Erin M. Duffy, Shauna M. Tietze, Allison L. Knoell, Nirosh D. Aluthge, Samodha C. Fernando, Ty B. Schmidt, Dustin T. Yates, Jessica L. Petersen

Department of Animal Science: Faculty Publications

The rumen has several important physiological functions, including absorption, transport, metabolic activity, and host protection (Roh et al., 2007). The rumen is extensively researched due to the importance of ruminants in agriculture and the major role played by rumen microbes in nutrient utilization and health of the ruminant animal. The microbial community of the rumen is altered by diet (McCann et al., 2014), age (Jami et al., 2013), and environment.

Chronic Maternal Inflammation During Late Gestation Impairs Subsequent Β-Cell Function But Not Islet Growth In Fetal Sheep, M.D. Abebe, C.N. Cadaret, T.B. Barnes, K.A. Beede, D. T. Yates

Department of Animal Science: Faculty Publications

Intrauterine growth restriction (IUGR) greatly increases perinatal mortality and morbidity rates, and leads to much greater risk for metabolic complications later in life. One such complication is the development of glucose intolerance or diabetes, which typically develops concurrently with abhorrent patterns of insulin secretions due to diminished β-cell mass and impaired function as well as an overall reduction in pancreatic endocrine tissue. The mechanisms by which IUGR causes problems with health and function of the pancreatic islets are not well understood. Therefore, our goal for this study was to determine how materno-fetal inflammation (MI) affects β-cell growth and function. To …

Research Note Prediction Model For Manure Zinc Excretion In Laying Hens, Kelli M. Martin, N. Vargas-Jurado, S. E. Purdum

Department of Animal Science: Faculty Publications

The objective of this research trial was to compare 2 sources of zinc and different levels of supplementation on manure zinc excretion in laying hens. Bovan White Leghorn hens were used in this study and fed one of 6 dietary treatments. Treatments were in a 2 × 3 factorial arrangement with 2 sources of zinc (zinc sulfate or Availa R < Zn) and 3 levels (40, 80, or 120 ppm) and were randomly assigned to 48 cages with 5 hens/cage and 8 replicates/treatment. Hens were housed in a tiered manure-belt housing system providing 627.1 cm2/hen and were given access to 110 g/hen/d of feed. Manure samples were collected, and manure zinc content was calculated at 10- week intervals. Data were analyzed using the Glimmix procedure in SAS. There was a significant overall effect of source (P < 0.0001) for zinc content, such that hens fed zinc sulfate had lower amounts of zinc excretion. There was also a significant level effect (P < 0.0001) in which hens fed 120 ppm zinc excreted the greatest amount of zinc. A significant source by level interaction was observed (P < 0.0001) for both the overall and individual analyses, such that 120 ppm Availa R < Zn showed the highest zinc excretion, and both 40 ppm zinc sulfate and Availa R < Zn showed the lowest zinc excretion. Based on these results, a prediction equation was written for an estimated amount of zinc excretion based on the amount of zinc provided in the diet.

Shinyaim: Shiny‐Based Application Of Interactive Manhattan Plots For Longitudinal Genome‐Wide Association Studies, Waseem Hussain, Malachy T. Campbell, Harkamal Walia, Gota Morota

Department of Animal Science: Faculty Publications

Owning to advancements in sensor‐based, non‐destructive phenotyping platforms, researchers are increasingly collecting data with higher temporal resolution. These phenotypes collected over several time points are cataloged as longitudinal traits and used for genome‐wide association studies (GWAS). Longitudinal GWAS typically yield a large number of output files, posing a significant challenge to data interpretation and visualization. Efficient, dynamic, and integrative data visualization tools are essential for the interpretation of longitudinal GWAS results for biologists; however, these tools are not widely available to the community. We have developed a flexible and user‐friendly Shiny‐based online application, ShinyAIM, to dynamically view and interpret temporal …

Uterine Prolapse In A Pregnant Cat, Zeynep Günay Uçmak, Meli̇h Uçmak, Ali̇ Can Çeti̇n, Çağatay Tek

Turkish Journal of Veterinary & Animal Sciences

A 3-year-old, 2.5-kg British shorthair cat with dystocia and protrusion of a mass through the vulva was presented to the Obstetrics and Gynaecology Clinic, Faculty of Veterinary Medicine, İstanbul University. Upon clinical examination, a complete uterine prolapse was diagnosed. Because of a blood blister and oedema in the uterine horns, ovariohysterectomy treatment was decided. During laparotomy, one foetus was detected in the cranial portion of the left uterine horn. After manual reduction and intraabdominal withdrawal of the prolapsed uterus, a caesarean section was performed to deliver the foetus. The last litter and the queen were discharged from the clinic in …

Primeness In Early Season Arkansas Raccoon Pelts, D. Blake Sasse

Journal of the Arkansas Academy of Science

Trapping seasons in the United States are generally set around the time of the year when pelts are in “prime” condition and are in their most valuable state. In order to assess whether the start of the Arkansas trapping season is at an appropriate date 122 raccoons were captured during the month of November in 2014 and 2015. Based on the evaluation of experienced fur dealers, the percentage of pelts in prime condition was then assessed on weekly and half-monthly basis. This study indicates that starting the trapping season in the last half of the month may maximize the percentage …

Organochloride Pesticides Present In Animal Fur, Soil, And Streambed In An Agricultural Region Of Southeastern Arkansas, Matthew E. Grilliot, John L. Hunt, Christopher G. Sims

Journal of the Arkansas Academy of Science

Animals in agricultural settings may be subject to bioaccumulation of toxins. For the last several years, we collected hair samples from bats and rodents in an agricultural area near Bayou Bartholomew in Drew County, Arkansas. Samples were submitted to the Center of Environmental Sciences and Engineering at the University of Connecticut for wide-screen toxin analysis. Several of these samples contained measurable amounts of organochloride pesticides or their metabolites, including some that have been banned for decades, such as dichlorodiphenyltrichloroethane (DDT) and chlordane. In addition, we collected several samples of soil from within an agricultural field, from adjacent edge habitat, from …

Evaluating Current And Future Range Limits Of An Endangered, Keystone Rodent (Dipodomys Ingens), Ivy V. Widick

Cal Poly Humboldt theses and projects

Climate is often considered the single most important factor limiting species’ ranges. Other factors, such as biotic interactions, are often assumed to be included via abiotic proxies. However, differential responses to climate change may decouple these relationships or lead to adaptation to novel environments. Accounting for competition and local adaptation should more accurately describe environmental factors influencing current distributions and increase the predictive accuracy of future distributions. Modeling the endangered giant kangaroo rat (Dipodomys ingens) is an excellent application of these model improvements, as the species range consists of geographically and genetically isolated populations experiencing disparate climatic change. …

Hunting Habitat Use And Selection Patterns Of Barn Owl (Tyto Alba) In The Urban-Agricultural Setting Of A Prominent Wine Grape Growing Region Of California, Xeronimo A. Castaneda

Cal Poly Humboldt theses and projects

Large scale conversion of uncultivated land to agriculture threatens wildlife and can diminish ecosystem services provided by nature. Understanding how wildlife provision ecosystem services may incentivize wildlife conservation in agricultural landscapes. Attracting barn owls (Tyto alba) to nest on farms for pest management has been documented worldwide, but has not been thoroughly evaluated in vineyard agroecosystems. Napa Valley, California is a renowned winegrape growing region, and viticulturists encourage barn owl occupancy to help minimize plant damage from pocket gophers (Thomomys bottae) and voles (Microtus spp.). This study aimed to establish a basis for revealing the …

Apparent Survival Of Snowy Plovers Varies Seasonally, Nora C. Papian

Cal Poly Humboldt theses and projects

Survival is an important vital rate that contributes to population viability, but is infrequently monitored and studied, especially compared to productivity. Furthermore, factors that limit survival and the relative effect on survival are often unknown. I used mark-resight observations of a small (~350) population of threatened Snowy Plovers (Charadrius nivosus nivosus) to quantify seasonal and annual variation in survival and movement between three coastal locations across ~70 km in Humboldt County, California. The return of individuals to non-breeding flocks at three locations was high between years (75-81%). Movement between three locations varied greatly, although most (n = 137) …

Rangewide Tidewater Goby Occupancy Survey Using Environmental Dna, Michael Sutter

Cal Poly Humboldt theses and projects

Rangewide monitoring of fish species is critical for determining status and trends in abundance and distribution; however, implementations of large-scale distribution surveys have generally been constrained by time and cost. This study uses environmental DNA (eDNA) to monitor the presence or absence of two endangered tidewater goby species, the northern tidewater goby (Eucyclogobius newberryi) and the southern tidewater goby (Eucyclogobius kristinae), across their combined geographic range that encompasses the entire California coast (1,350 km).A multi-scale occupancy model designed specifically for eDNA methods was used to account for imperfect detection and to estimate true site occupancy. A …

Sex-Specific Habitat Selection Of Rough-Legged Hawks (Buteo Lagopus) Wintering In Western North America, Genevieve Christa Rozhon

Cal Poly Humboldt theses and projects

The rough-legged hawk (Buteo lagopus sanctijohannis) is one of the most under-studied raptor species in North America. As a species that exhibits reversed sexual dimorphism, sex-specific habitat preferences may exist. To investigate rough-legged hawk sex-specific habitat selection preferences, we equipped 17 rough-legged hawks (n = eight females, nine males) with GPS backpacks on their wintering grounds (n = six study areas) during the winter months of 2014 and 2015 in five states in western North America. I analyzed rough-legged hawk habitat selection in relation to sex at four spatial scales: nocturnal roosting site, 50% core range, 95% winter …

Characterizing Glucose Tolerance In Adult Lew.1wr1 Rats, Luis Mercado, Genoah Collins, Amelia Clopp

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.