Life Sciences Commons^™

Semantic Sensor Web, Amit P. Sheth, Cory Henson, Krishnaprasad Thirunarayan

Kno.e.sis Publications

No abstract provided.

The Role Of Msa In Staphylococcus Aureus Biofilm Formation, Karthik Sambanthamoorthy, Antony Schwartz, Vijayaraj Nagarajan, Mohamed O. Elasri

Faculty Publications

Background

Staphylococcus aureus is an important pathogen that forms biofilms. The global regulator sarA is essential for biofilm formation. Since the modulator of sarA (msa) is required for full expression of sarA and regulates several virulence factors, we examined the capacity of the msa mutant to form biofilm.

Results

We found that mutation of msa results in reduced expression of sarA in biofilm and that the msa mutant formed a weak and unstable biofilm. The msa mutant is able to adhere to surfaces and begins to form biofilm but fails to mature indicating that the defect of the …

Gokilaht®-S 5ec Testing On Culex Quinquefasciatus Say Larvae For An Early Detection In Esterase And Monooxygenase Resistance System, Soam Prakash, Gavendra Singh

Soam Prakash

Identification Of G1-Regulated Genes In Normally Cycling Human Cells, Maroun J. Beyrouthy, Karen E. Alexander, Amy Baldwin, Michael L. Whitfield, Hank W. Bass, Dan Mcgee, Myra M. Hurt

Dartmouth Scholarship

Background: Obtaining synchronous cell populations is essential for cell-cycle studies. Methods such as serum withdrawal or use of drugs which block cells at specific points in the cell cycle alter cellular events upon re-entry into the cell cycle. Regulatory events occurring in early G1 phase of a new cell cycle could have been overlooked. Methodology and Findings: We used a robotic mitotic shake-off apparatus to select cells in late mitosis for genome-wide gene expression studies. Two separate microarray experiments were conducted, one which involved isolation of RNA hourly for several hours from synchronous cell populations, and one experiment which examined …

A New Species Of Gobiid Fish,Luciogobius From Ryukyus, Japan(Teleostei: Gobiidae), I-Shiung Chen, Toshiyuki Suzuki, Hiroshi Senou

Journal of Marine Science and Technology

A new gobiid fish has been collected from Ryukyu Archipelagos of Japan. This species is described herein as a new species, Luciogobius ryukyuensis sp. nov. It is characterized by the following unique combination of features: (1) second dorsal fin rays: I/11 and anal fin rays I/11; (2) pectoral fin rays 16 and with one upper, very short free soft ray; (3) vertebral count 37; and (4) specific coloration: head and body with many rounded light creamy white spots above creamy yellow to yellowish brown background. A diagnostic key to all nominal species of Luciogobius from West Pacific are provided herein.

Comparison Of Two Training Programs On Acceleration Out Of The Break In American Football, Micah Adam Alba

Theses and Dissertations

Athletes of American football need the ability to stop, start, and reach top speed in an efficient manner. Football players on the defensive side of the ball require the skill of stopping a backward run and accelerating to a forward run. This action is termed the break. Football players receive year-round training in an effort to improve performance. Yet, many times, these athletes may not focus specifically on the muscular systems that are unique to the position they play. The law of specificity states that the more specific the training is for the action required, the more beneficial the outcome. …

Smokejumper Obituary: Cross, Gordon C. (Cave Junction 1951), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Smokejumper Obituary: Parker, Charles D. "Chuck" (Missoula 1947), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Iron Acquisition In Rhodococcus Erythropolis Strain Igts8: Characterization Of A Mutant Strain That Over Produces Siderophore., Melanie Anne Pratt

Electronic Theses and Dissertations

Iron is an essential nutrient for most bacteria because enzymes like nitrate reductase and cytochromes use it as a cofactor. However, in most aerobic, neutral pH environments, iron is essentially insoluble and not easily available for bacteria to use. Many bacteria respond to this problem by releasing small organic compounds called siderophores that bind and effectively solubilize iron so that it can be transported into the cell for growth. The focus of this study was to learn more about the iron acquisition and especially the transport of iron by the soil bacterium Rhodococcus erythropolis. To fulfill this aim, mutant …

Elucidating The Role Of The Α7 Nicotinic Receptor In The Etiology Of Schizophrenia., Michelle Johnson Chandley

Electronic Theses and Dissertations

The α7 subunit of the nicotinic receptor, a ligand gated ion channel with an affinity for nicotine, has long been implicated in the pathophysiology of schizophrenia due to the extremely high rate of smoking within the patient population. However, the exact role of the receptor has never fully been determined. In the following studies, various functions the receptor may assume in disease state are evaluated. There is a strong relationship between the immune system and schizophrenia, with the α7 subunit possibly serving as the link between the two. One of the following studies looks at the possibility of the receptor …

Herpes Simplex Virus Glycoprotein D/Host Cell Surface Interaction Stimulates Chlamydia Trachomatis Persistence Via A Novel Pathway., Jennifer Vanover

Electronic Theses and Dissertations

When presented with certain unfavorable environmental conditions, C. trachomatis reticulate bodies (RBs) enter into a viable, yet noncultivable state called persistence. Two hallmarks of persistent chlamydiae are swollen, aberrantly shaped RBs, as viewed by transmission electron microscopy and a decrease in infectious progeny. Several models of chlamydial persistence have been described, including interferon-γ (IFN-γ), IFN-α, IFN-β, and tumor necrosis factor-α-exposure and nutrient deprivation. Previously, we established an in vitro co-infection model of two of the most common sexually transmitted pathogens in the United States, C. trachomatis and Herpes Simplex Virus-2 (HSV). Data from this tissue culture model indicate that: i) …

Urinary Excretion Of (1-3)-Beta-D-Glucans., Debra K. Head

Electronic Theses and Dissertations

(1→3)-β-D-Glucans are carbohydrate polymers that are present in the cell wall of various fungi and bacteria; they are pathogen associated molecular patterns that circulate during infection and modulate immunity. Our laboratory has previously established the pharmacokinetics of intravenously and orally administered glucans; the present studies investigated the renal excretion of (1→3)-β-D-glucans following intravenous and oral administration. Three fluorescently-labeled glucans were administered to adult male rats in the presence or absence of toxic challenge. Urine specimens were collected and analyzed by fluorescence spectroscopy, size-exclusion chromatography and GPC/MALLS. 71 ± 3% of fluorescence remained in the >5K MWCO fraction; this fraction showed …

Ecology Of The Evening Bat (Nycticeius Humeralis) At The Northern Edge Of The Range, Olivia Maya Munzer

Master's Theses and Doctoral Dissertations

Only a single colony of evening bats (Nycticeius humeralis) is known to occur in Michigan, and it is the northernmost colony on the North American continent. In mid-May, only female evening bats migrate to Michigan to raise their pups, and in late August, evening bats migrate to southern portions of their range, where they are ubiquitous. I studied the roosting and dietary ecology of the evening bat in southeastern Michigan. Evening bats roosted in cavities, crevices, and under exfoliating bark of older trees located in a bottomland forest, interlaced with waterways and surrounded by agricultural fields. These habitats …

A High-Oleic-Acid And Low-Palmitic-Acid Soybean: Agronomic Performance And Evaluation As A Feedstock For Biodiesel, George L. Graef, Bradley J. Lavallee, Patrick Tenopir, Mustafa Tat, Bruce Schweiger, Anthony J. Kinney, Jon H. Van Gerpen, Thomas E. Clemente

Department of Agronomy and Horticulture: Faculty Publications

Phenotypic characterization of soybean event 335-13, which possesses oil with an increased oleic acid content (> 85%) and reduced palmitic acid content (< 5%), was conducted across multiple environments during 2004 and 2005. Under these conditions, the stability of the novel fatty acid profile of the oil was not influenced by environment. Importantly, the novel soybean event 335-13 was not compromised in yield in both irrigated and non-irrigated production schemes. Moreover, seed characteristics, including total oil and protein, as well as amino acid profile, were not altered as a result of the large shift in the fatty acid profile. The novel oil trait was inherited in a simple Mendelian fashion. The event 335-13 was also evaluated as a feedstock for biodiesel. Extruded oil from event 335-13 produced a biodiesel with improved cold flow and enhanced oxidative stability, two critical fuel parameters that can limit the utility of this renewable transportation fuel.

Why Do Dolphins Carry Sponges?, Janet Mann, Brooke L. Sargeant, Jana J. Watson-Capps, Quincy A. Gibson, Michael R. Heithaus, Richard C. Connor, Eric Patterson

Department of Biological Sciences

Tool use is rare in wild animals, but of widespread interest because of its relationship to animal cognition, social learning and culture. Despite such attention, quantifying the costs and benefits of tool use has been difficult, largely because if tool use occurs, all population members typically exhibit the behavior. In Shark Bay, Australia, only a subset of the bottlenose dolphin population uses marine sponges as tools, providing an opportunity to assess both proximate and ultimate costs and benefits and document patterns of transmission. We compared sponge-carrying (sponger) females to non-spongecarrying (non-sponger) females and show that spongers were more solitary, spent …

Changes In Biotic And Abiotic Processes Following Mangrove Clearing, Elise Granek, Benjamin I. Ruttenberg

Biological Sciences

Mangrove forests, important tropical coastal habitats, are in decline worldwide primarily due to removal by humans. Changes to mangrove systems can alter ecosystem properties through direct effects on abiotic factors such as temperature, light and nutrient supply or through changes in biotic factors such as primary productivity or species composition. Despite the importance of mangroves as transitional habitats between land and sea, little research has examined changes that occur when they are cleared. We examined changes in a number of biotic and abiotic factors following the anthropogenic removal of red mangroves (Rhizophora mangle) in the Panamanian Caribbean, including …

Capturing Workflow Event Data For Monitoring, Performance Analysis, And Management Of Scientific Workflows, Matthew Valerio, Satya S. Sahoo, Roger Barga, Jared Jackson

Kno.e.sis Publications

To effectively support real-time monitoring and performance analysis of scientific workflow execution, varying levels of event data must be captured and made available to interested parties. This paper discusses the creation of an ontology-aware workflow monitoring system for use in the Trident system which utilizes a distributed publish/subscribe event model. The implementation of the publish/subscribe system is discussed and performance results are presented.

Neural Substrates Of Sound–Touch Synesthesia After A Thalamic Lesion, Michael S. Beauchamp, Tony Ro

Publications and Research

Neural plasticity induced by stroke can mediate positive outcomes, such as recovery of function, but can also result in the formation of abnormal connections with negative consequences for perception and cognition. In three experiments using blood-oxygen level dependent (BOLD) functional magnetic resonance imaging, we examined the neural substrates of acquired auditory-tactile synesthesia, in which certain sounds can produce an intense somatosensory tingling sensation in a patient with a thalamic lesion. Compared with nine normal controls, the first experiment showed that the patient had a threefold greater BOLD response to sounds in the parietal operculum, the location of secondary somatosensory cortex. …

Increased Survival Of Western Corn Rootworm On Transgenic Corn Within Three Generations Of On-Plant Greenhouse Selection, Lisa N. Meihls, Matthew L. Higdon, Blair D. Siegfried, Nicholas J. Miller, Thomas W. Sappington, Mark R. Ellersieck, Terrence A. Spencer, Bruce E. Hibbard

Department of Entomology: Faculty Publications

To delay evolution of insect resistance to transgenic crops producing Bacillus thuringiensis (Bt) toxins, nearby ‘‘refuges’’ of host plants not producing Bt toxins are required in many regions. Such refuges are expected to be most effective in slowing resistance when the toxin concentration in Bt crops is high enough to kill all or nearly all insects heterozygous for resistance. However, Bt corn, Zea mays, introduced recently does not meet this ‘‘high-dose’’ criterion for control of western corn rootworm (WCR), Diabrotica virgifera virgifera. A greenhouse method of rearing WCR on transgenic corn expressing the Cry3Bb1 protein was used in …

Early Post-Fire Recovery On A Heavily Visited Mojave Desert Burn: Red Rock Canyon Near Las Vegas, Nevada, Scott R. Abella, E. Cayenne Engel, Christina L. Lund, Jessica E. Spencer

Fire Science Presentations

Wildfire has become widespread in southwestern USA deserts. In a record 2005 fire season in the Mojave Desert, for example, more than 385,000 hectares burned (Brooks and Matchett 2006). This burned area is approximately 3% of the entire Mojave Desert. Fueled in large part by exotic annual grasses, these fires burned desert ecosystems thought to have only burned infrequently historically. Burns now occupy significant portions of desert landscapes, posing prominent management challenges. Improving our understanding of plant recovery on desert burns is important for evaluating future fire hazard, whether natural revegetation will meet management objectives, and for planning active revegetation …

Using A Diverse Seed Mix To Establish Native Plants On A Sonoran Desert Burn, Scott R. Abella, John L. Gunn, Mark L. Daniels, Judith D. Springer, Susan E. Nyoka

Fire Science Presentations

• Revegetating burned areas is a formidable challenge facing resource managers in southwestern United States arid lands.
• Natural revegetation of desert burns by native species may be slow, or dominated by exotic annual grasses that perpetuate a frequent-fire regime.
• Resource managers may have several reasons for actively revegetating burns with native species, such as for providing competition with exotic species, minimizing soil erosion and dust pollution, and improving aesthetics.
• The use of native species in revegetation has been limited by a lack of available seed and by findings that native desert species are difficult to establish (e.g., Bainbridge and Virginia 1990, …

Post-Fire Plant Recovery In The Mojave And Sonoran Deserts Of Western North America, Scott R. Abella, Public Lands Institute, Department Of Environmental Studies, University Of Nevada, Las Vegas

Fire Science Presentations

Fire is thought to have been generally rare historically in the Mojave and Sonoran Deserts. However, invasion by exotic grasses (e.g., Schismus spp.) has increased fuel continuity, promoting fire in these deserts. Succession and recovery are not well understood processes in deserts, nonetheless for a novel disturbance like fire. In addition to helping build theories of desert succession and recovery, information on post-fire recovery has numerous practical implications (e.g., determining whether active revegetation is needed). Systematic reviews provide a means for obtaining literature using reproducible search criteria. This approach facilitates a balanced appraisal of available information, synthesizes scattered literature, and …

Clustering Neural Spike Trains With Transient Responses, John D. Hunter, Jianhong Wu, John Milton

WM Keck Science Faculty Papers

The detection of transient responses, i.e. nonstationarities, that arise in a varying and small fraction of the total number of neural spike trains recorded from chronically implanted multielectrode grids becomes increasingly difficult as the number of electrodes grows. This paper presents a novel application of an unsupervised neural network for clustering neural spike trains with transient responses. This network is constructed by incorporating projective clustering into an adaptive resonance type neural network (ART) architecture resulting in a PART neural network. Since comparisons are made between inputs and learned patterns using only a subset of the total number of available dimensions, …

The Impact Of Repeated Rounds Of Mass Drug Administration With Diethylcarbamazine Plus Albendazole On Bancroftian Filariasis In Papua New Guinea, Gary J. Weil, Will Kastens, Melinda Susapu, Sandra J. Laney, Steven A. Williams, Christopher L. King, James W. Kazura, Moses J. Bockarie

Biological Sciences: Faculty Publications

Background: This study employed various monitoring methods to assess the impact of repeated rounds of mass drug administration (MDA) on bancroftian filariasis in Papua New Guinea, which has the largest filariasis problem in the Pacific region.

Methodology/Principal Findings: Residents of rural villages near Madang were studied prior to and one year after each of three rounds of MDA with diethylcarbamazine plus albendazole administered per World Health Organization (WHO) guidelines. The mean MDA compliance rate was 72.9%. Three rounds of MDA decreased microfilaremia rates (Mf, 1 ml night blood by filter) from 18.6% pre-MDA to 1.3% after the third MDA (a …

Smokejumper Obituary: Butler, Dail Junior (Idaho City 1951), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Smokejumper Obituary: Bangle, Edward C. (Missoula 1947), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Cranes Of The World In 2008: A Supplement To Crane Music, Paul A. Johnsgard

Papers in Ornithology

Time proceeds inexorably onward, and it has been 17 years since the first edition of Crane Music was published. During that time more than a billion people have been added to the earth's roles, and global warming has increasingly been recognized as a real tlu:oat to our planet's future. Although during that period a small percentage of Americans have become very rich through advances in technology, expanding markets and globalization, wildlife in general has suffered. Continuing population growth and associated economic and ecological pressures have resulted in greatly increased deforestation, wetland drainage, and destruction of natural habitats. Additionally, global climate …

Louis A. Fuertes And The Zoological Art Of The 1926–1927 Abyssinian Expedition Of The Field Museum Of Natural History, Paul A. Johnsgard

Papers in Ornithology

The year 2009 marked the 110th anniversary of the first colored reproduction of a Fuertes painting; a watercolor of two seaside sparrows published in The Auk, when Fuertes was about 25 years old. Although Fuertes' life spanned little more than a half-century, and most living ornithologists were born after his tragic 1927 death, his influence on natural history art has not lessened. This manuscript is a testimony to his enduring artistic legacy.

I first looked in awe at the original set of Fuertes paintings in the summer of 1995, during a visit to the Field Museum in conjunction with …

Production Of Marine Trematode Cercariae: A Potentially Overlooked Path Of Energy Flow In Benthic Systems, David W. Thieltges, Xavier De Montaudouin, Brian L. Fredensborg, K. Thomas Jensen, Janet Koprivnikar, Robert Poulin

Biology Faculty Publications and Presentations

Parasites, in particular trematodes, are unseen but ubiquitous components of marine intertidal ecosystems. Although parasites are known to affect population dynamics and food web structure, their potential function as an unrecognized path of energy flow in these ecosystems is yet to be quantified. We use published data on rates at which trematodes produce free-swimming infective larvae (cercariae) that are released from their gastropod intermediate hosts to investigate patterns in cercarial output as a function of different variables, and to calculate the annual production of cercariae in different marine benthic systems. Across 18 trematode species, cercarial output (no. cercariae shed snail–1 …

Worm-Web Search: A Content-Based Image Retrieval (Cbir) System For The Parasite Image Collection In The Harold W. Manter Laboratory Of Parasitology, University Of Nebraska State Mueum, Ramalingamurthy Meduri, Ashok Samal, Scott Lyell Gardner

Harold W. Manter Laboratory of Parasitology: Faculty and Staff Publications

We have developed a prototype web-accessible content-based image retrieval (CBIR) system that allows internet/web-based sharing of biological collections that contain large numbers of images of archived specimens. This system will enable both researchers and educators to access verified, high quality data on biological collections that are available in any museum with digitized holdings. The CBIR system that we are testing can play an important role in understanding global biodiversity because no knowledge of the specific names of specimens need be known before useful information can be extracted from such databases. Our CBIR framework allows users to search image collections using …