Life Sciences Commons^™

Monitoring The Abundance Of American Shad And River Herring In Virginia’S Rivers 2021 Annual Report, Eric J. Hilton, Patrick E. Mcgrath, Brian Watkins, Ashleigh Magee

Reports

This report describes the results of the twenty-fourth year of a continuing study to estimate the relative abundance and assess the status of American shad (Alosa sapidissima) stocks in Virginia by monitoring the spawning runs in the James, York and Rappahannock rivers in spring 2021, evaluating hatchery programs, and contributing to coast-wide assessments (ASMFC 2007, ASMFC 2020).

We also report on two fishery independent monitoring programs using anchor gillnets in the Rappahannock River (year 4) and the Chickahominy River (year 7; a major tributary of the James River), to determine relative abundance and stock structure for the adult spawning run …

2021 Annual Awards, Virginia Institute Of Marine Science

Miscellaneous

The Annual Awards ceremony is an occasion in which new employees and volunteers are introduced, employee service is recognized and student and faculty awards are presented.

A Biologging Database Of Juvenile White Sharks From The Northeast Pacific, J. O'Sullivan, C. G. Lowe, (...), Kevin C. Weng, Et Al

VIMS Articles

Species occurrence records are vital data streams in marine conservation with a wide range of important applications. From 2001–2020, the Monterey Bay Aquarium led an international research collaboration to understand the life cycle, ecology, and behavior of white sharks (Carcharodon carcharias) in the southern California Current. The collaboration was devoted to tagging juveniles with animal-borne sensors, also known as biologging. Here we report the full data records from 59 pop-up archival (PAT) and 20 smart position and temperature transmitting (SPOT) tags that variously recorded pressure, temperature, and light-level data, and computed depth and geolocations for 63 individuals. Whether transmitted or …

The Feeding Ecology And Microbiome Of The Pteropod Limacina Helicina Antarctica, Patricia S. Thibodeau, Bongkeun Song, Carly M. Moreno, Deborah K. Steinberg

VIMS Articles

The pteropod (pelagic snail) Limacina helicina antarctica is a dominant grazer along
the Western Antarctic Peninsula (WAP) and plays an important role in regional food web dynamics and biogeochemical cycling. For the first time, we examined the gut microbiome and feeding ecology of L. h. antarctica based on 16S and 18S rRNA gene sequences of gut contents in the WAP during austral summer. Eukaryotic gut contents of L. h. antarctica indicate that this species predominantly feeds on diatoms and dinoflagellates, supplementing its diet with ciliates and foraminifera. Mollicutes bacteria were a consistent component of the gut microbiome. Determining the gut …

Reviews And Syntheses: Spatial And Temporal Patterns In Seagrass Metabolic Fluxes, Melissa Ward, Tye L. Kindinger, Heidi K. Hirsh, (...), Emily B. Rivest, Et Al

VIMS Articles

Seagrass meadow metabolism has been measured for decades to gain insight into ecosystem energy, biomass production, food web dynamics, and, more recently, to inform its potential in ameliorating ocean acidification (OA). This extensive body of literature can be used to infer trends and drivers of seagrass meadow metabolism. Here, we synthesize the results from 56 studies reporting in situ rates of seagrass gross primary productivity, respiration, and/or net community productivity to highlight spatial and temporal variability in oxygen (O₂) fluxes. We illustrate that daytime net community production (NCP) is positive overall and similar across seasons and geographies. Full-day …

Development Of An Individual-Based Tag Recapture Model To Benchmark Biomass And Harvest Rates In An Iconic Lobster Fishery, Simon De Lestang, John Hoenig, Jason How

VIMS Articles

The West Coast Rock Lobster Managed Fishery (WCRLMF) moved from input to output controls in 2010. This change affected the relativity of fishery-based data sources (e.g., catch rates and landed size composition), making the assessment of the fishery problematic. A novel examination of the stock dynamics was required to ensure the robustness of the stock assessment and associated management arrangements. This study derived estimates of current biomass levels and harvest rates from the release of over 60,000 tagged western rock lobsters (Panulirus cygnus). A Brownie tag-recapture (BTR) model was initially implemented to provide an assessment on a fishery-wide …

Unresolved Taxonomy Confounds Invasive Species Identification: The Lysmata Vittata Stimpson, 1860 (Decapoda: Caridea: Lysmatidae) Species Complex And Recent Introduction Of Lysmata Vittata Sensu Stricto In The Western Atlantic, Robert Aguilar, Sanjeevi Prakash, (...), Troy D. Tuckey, J. Antonio Baeza

VIMS Articles

Peppermint shrimp resembling Lysmata vittata Stimpson, 1860, a species native to the Indo- West Pacific, were found in the lower Chesapeake Bay and adjacent coastal embayments in 2013, representing the first recorded introduction of this species in the northwestern Atlantic. Conflicting morphological descriptions, inconsistent morphological terminology, and limited molecular data (i.e., unresolved taxonomy), as well as the destruction of the type material of L. vittata, created uncertainty regarding proper identification. We provide the first phylogeny incorporating individuals from across the presumed native and introduced range of L. vittata. Morphological and phylogenetic analyses clearly indicate L. vittata represents a species complex …

A Deterministic Model For Understanding Nonlinear Viral Dynamics In Oysters, Qubin Qin, Jian Shen, Kimberly S. Reece

VIMS Articles

Contamination of oysters with a variety of viruses is one key pathway to trigger outbreaks of massive oyster mortality as well as human illnesses, including gastroenteritis and hepatitis. Much effort has gone into examining the fate of viruses in contaminated oysters, yet the current state of knowledge of nonlinear virus-oyster interactions is not comprehensive because most studies have focused on a limited number of processes under a narrow range of experimental conditions. A framework is needed for describing the complex nonlinear virus-oyster interactions. Here, we introduce a mathematical model that includes key processes for viral dynamics in oysters, such as …

Refining Real-Time Predictions Of Vibrio Vulnificus Concentrations In A Tropical Urban Estuary By Incorporating Dissolved Organic Matter Dynamics, Jessica Bullington, Abigal R. Golder, Grieg F. Steward, Et Al

VIMS Articles

The south shore of Oʻahu, Hawaiʻi is one of the most visited coastal tourism areas in the United States with some of the highest instances of recreational waterborne disease. A population of the pathogenic bacterium Vibrio vulnificus lives in the estuarine Ala Wai Canal in Honolulu which surrounds the heavily populated tourism center of Waikīkī. We developed a statistical model to predict V. vulnificus dynamics in this system using environmental measurements from moored oceanographic and atmospheric sensors in real time. During a year-long investigation, we analyzed water from 9 sampling events at 3 depths and 8 sites along the canal …

Beautiful Swimmers Attack At Low Tide, David S. Johnson

VIMS Articles

It is low tide in a salt marsh. A blue crab, Callinectes sapidus, digs a shallow-water pit. It appears that the crab has missed the outgoing tide and is waiting for the next one. But it is not the tide the crab is waiting for. A female fiddler crab, Minuca pugnax, picks at the mud near the pit with its claws. It is eating. The blue crab waits. The fiddler crab moves closer to the pit. Suddenly, the water explodes as the blue crab seizes the fiddler crab and pulls it into the pit. Now it is the …

Diving Into The Vertical Dimension Of Elasmobranch Movement Ecology, Samantha Andrzejaczek, Tim C.D. Lucas, (...), Kevin Weng, Et Al

VIMS Articles

Knowledge of the three-dimensional movement patterns of elasmobranchs is vital to understand their ecological roles and exposure to anthropogenic pressures. To date, comparative studies among species at global scales have mostly focused on horizontal movements. Our study addresses the knowledge gap of vertical movements by compiling the first global synthesis of vertical habitat use by elasmobranchs from data obtained by deployment of 989 biotelemetry tags on 38 elasmobranch species. Elasmobranchs displayed high intra- and interspecific variability in vertical movement patterns. Substantial vertical overlap was observed for many epipelagic elasmobranchs, indicating an increased likelihood to display spatial overlap, biologically interact, and …

Core Metabolism Plasticity In Phytoplankton: Response Of Dunaliella Tertiolecta To Oil Exposure, Manoj Kamalanathan, Savannah Mapes, Alexandra Prouse, Et Al

VIMS Articles

Human alterations to the marine environment such as an oil spill can induce oxidative stress in phytoplankton. Exposure to oil has been shown to be lethal to most phytoplankton species, but some are able to survive and grow at unaffected or reduced growth rates, which appears to be independent of the class and phylum of the phytoplankton and their ability to consume components of oil heterotrophically. The goal of this article is to test the role of core metabolism plasticity in the oil-resisting ability of phytoplankton. Experiments were performed on the oil- resistant chlorophyte, Dunaliella tertiolecta, in control and …

Stepping Stones Towards Antarctica: Switch To Southern Spawning Grounds Explains An Abrupt Range Shift In Krill, Angus Atkinson, Simeon L. Hill, (...), Deborah K. Steinberg, Et Al

VIMS Articles

Poleward range shifts are a global-scale response to warming, but these vary greatly among taxa and are hard to predict for individual species, localized regions or over shorter (years to decadal) timescales. Moving poleward might be easier in the Arctic than in the Southern Ocean, where evidence for range shifts is sparse and contradictory. Here, we compiled a database of larval Antarctic krill, Euphausia superba and, together with an adult database, it showed how their range shift is out of step with the pace of warming. During a 70-year period of rapid warming (1920s–1990s), distribution centres of both larvae and …

New Technologies Aid Understanding Of The Factors Affecting Adélie Penguin Foraging, Walker O. Smith Jr., David G. Ainley, Karen J. Heywood, Grant Ballard

VIMS Articles

The Ross Sea (Figure 1) is home to 33% of the world’s Adélie penguins (Pygoscelis adeliae), as well as substantial numbers of Emperor penguins (Aptenodytes forsteri), Weddell seals (Leptonychotes weddellii), and pelagic birds (Smith et al., 2014). Among these, the Commission for the Conservation of Antarctic Marine Resources (CCAMLR) has designated the Adélie penguin an “indicator species” for monitoring ecosystem structure and function in the newly designated Ross Sea Region Marine Protected Area (RSR-MPA). This penguin, among the best-known seabirds, has been studied for decades at multiple locations with investigations that have delved into …

Adaptive Carbon Export Response To Warming In The Sargasso Sea, Michael W. Lomas, Nicholas R. Bates, Rodney J. Johnson, Deborah K. Steinberg, Tatsuro Tanioka

VIMS Articles

Ocean ecosystem models predict that warming and increased surface ocean stratification will trigger a series of ecosystem events, reducing the biological export of particulate carbon to the ocean interior. We present a nearly three-decade time series from the open ocean that documents a biological response to ocean warming and nutrient reductions wherein particulate carbon export is maintained, counter to expectations. Carbon export is maintained through a combination of phytoplankton community change to favor cyanobacteria with high
cellular carbon-to-phosphorus ratios and enhanced shallow phosphorus recycling leading to increased nutrient use efficiency. These results suggest that surface ocean ecosystems may be more …

Spatial Variability Of Microzooplankton Grazing On Phytoplankton In Coastal Southern Florida, Usa, Nicole C. Millette, Christopher Kelble, Ian Smith, Kelly Montenero, Elizabeth Harvey

VIMS Articles

Microzooplankton are considered the primary consumers of phytoplankton in marine environments. Microzooplankton grazing rates on phytoplankton have been studied across the globe, but there are still large regions of the ocean that are understudied, such as sub-tropical coastal oceans. One of these regions is the coastal area around south Florida, USA. We measured microzooplankton grazing rates in two distinct environments around south Florida; the oligotrophic Florida Keys and the mesotrophic outflow from the Everglades. For 2-years from January 2018 to January 2020, we set up 55 dilution and light-dark bottle experiments at five stations to estimate the microzooplankton community grazing …

Contrasting Controls On Seasonal And Spatial Distribution Of Marine Cable Bacteria (Candidatus Electrothrix) And Beggiatoaceae In Seasonally Hypoxic Chesapeake Bay, Sairah Y. Malkin, Pinky Liau, Carol Kim, Kalev G. Hantsoo, Maya L. Gomes, Bongkeun Song

VIMS Articles

Marine cable bacteria (Candidatus Electrothrix) and large colorless sulfur-oxidizing bacteria (e.g., Beggiatoaceae) are widespread thiotrophs in coastal environments but may exert different influences on biogeochemical cycling. Yet, the factors governing their niche partitioning remain poorly understood. To map their distribution and evaluate their growth constraints in a natural setting, we examined surface sediments across seasons at two sites with contrasting levels of seasonal oxygen depletion in Chesapeake Bay using microscopy coupled with 16S rRNA gene amplicon sequencing and biogeochemical characterization. We found that cable bacteria, dominated by a single phylotype closely affiliated to Candidatus Electrothrix communis, flourished during …

Reproduction, Body Condition, Age, And Growth Of A Large Sandy Intertidal Bivalve, Tivela Stultorum, Alexandria R. Marquardt, Noël M. Clark, Eliana G. Maietta, Et Al

VIMS Articles

The iconic Pismo clam Tivela stultorum (Mawe, 1823) once supported a thriving commercial and recreational fishery in California, but populations have declined statewide in recent decades, in part due to overfishing. To manage and restore populations, fishery managers need accurate life history information, but critical data on reproductive cycles, maturity, and growth rates is either unknown or many decades old. This project aimed to (1) determine annual reproductive cycles and body condition of Pismo clams; (2) identify environmental drivers of reproduction and body condition; (3) determine size-age relationships among clams in California; and (4) estimate growth rates. Up to 70 …

Non-Native Red Alga Gracilaria Vermiculophylla Compensates For Seagrass Loss As Blue Crab Nursery Habitat In The Emerging Chesapeake Bay Ecosystem, Megan A. Wood, Romuald N. Lipcius

VIMS Articles

Non-native species can become deleterious or potentially beneficial as components of novel ecosystems. The non-native red macroalga Gracilaria vermiculophylla may provide nursery habitat where eelgrass Zostera marina has been extirpated in Chesapeake Bay. A mensurative experiment was conducted monthly May–October 2013 and 2014 in the York River, Chesapeake Bay, to evaluate hypotheses that Gracilaria (1) can compensate for the loss of seagrass nurseries by colonizing habitats where seagrass has been eliminated by environmental stress, and (2) is utilized by juvenile blue crabs (Callinectes sapidus) as nursery habitat. We quantified Gracilaria presence, percent cover, and biomass as a function …

Effects Of Two Toxin-Producing Harmful Algae, Alexandrium Catenella And Dinophysis Acuminata (Dinophyceae), On Activity And Mortality Of Larval Shellfish, Sarah K.D. Pease, Michael L. Brosnahan, Marta P. Sanderson, Juliette L. Smith

VIMS Articles

Harmful algal bloom (HAB) species Alexandrium catenella and Dinophysis acuminata are associated with paralytic shellfish poisoning (PSP) and diarrhetic shellfish poisoning (DSP) in humans, respectively. While PSP and DSP have been studied extensively, less is known about the effects of these HAB species or their associated toxins on shellfish. This study investigated A. catenella and D. acuminata toxicity in a larval oyster (Crassostrea virginica) bioassay. Larval activity and mortality were examined through 96-h laboratory exposures to live HAB cells (10–1000 cells/mL), cell lysates (1000 cells/mL equivalents), and purified toxins (10,000 cells/mL equivalents). Exposure to 1000 cells/mL live or lysed D. …

The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 2. Assessing Economic Impacts, Andrew M. Scheld, Jennifer Beckensteiner, Daphne M. Munroe, Et Al

VIMS Articles

The Atlantic surfclam (Spisula solidissima) fishery generates approximately USD 30 million in landings revenues annually, distributed across ports throughout the US Mid-Atlantic and Northeast. Overlap between areas of Atlantic surfclam harvests and offshore wind energy leasing make the fishery vulnerable to exclusion and effort displacement as development expands in the region. An existing integrated bioeconomic agent-based model, including spatial dynamics in Atlantic surfclam stock biology, heterogeneous captain behaviour, and federal management processes, was extended to incorporate costs and revenues for fishing vessels and processors and used to evaluate the potential economic effects of offshore wind development on the …

Oceans Of Plenty? Challenges, Advancements, And Future Directions For The Provision Of Evidence-Based Fisheries Management Advice, Daniel R. Goethel, Kristen L. Omori, André E. Punt, Et Al

VIMS Articles

Marine population modeling, which underpins the scientific advice to support fisheries interventions, is an active research field with recent advancements to address modern challenges (e.g., climate change) and enduring issues (e.g., data limitations). Based on discussions during the ‘Land of Plenty’ session at the 2021 World Fisheries Congress, we synthesize current challenges, recent advances, and interdisciplinary developments in biological fisheries models (i.e., data-limited, stock assessment, spatial, ecosystem, and climate), management strategy evaluation, and the scientific advice that bridges the science-policy interface. Our review demonstrates that proliferation of interdisciplinary research teams and enhanced data collection protocols have enabled increased integration of …

Spatial Differences In Estuarine Utilization By Seasonally Resident Species In Mid-Atlantic Bight, Usa, Adena J. Schonfeld, James Gartland, Robert J. Latour

VIMS Articles

Climate-driven distributional shifts have been well-documented for fisheries resources along the East Coast of the United States, yet little attention has been given to adjacent estuarine systems. The Chesapeake Bay is the largest estuary in the continental United States and serves as important habitat for a diversity of fishes and invertebrates, many of which are seasonal residents. Survey data indicate that relative abundance of finfish in Chesapeake Bay has diminished substantially, while coastwide stock status has remained unchanged. In response to warming, seasonal estuarine residents may remain in coastal waters or inhabit a northerly estuary, but the extent to which …

From The Subsurface To The Sky: Tracking Groundwater With Drones, Stephanie Wilson

Reports

Grades: High School Subjects: Earth Science | Physical Science

Determining the inputs of nitrogen to coastal waters from drone based radiometric temperature data.

Topics covered:

• Technology and radiometric imagery
• Drones in science
• Groundwater
• Nutrients / pollutants
• Water cycle/ Watersheds

Selectively Breeding Hard Clams, Leslie Speight Youtsey

Reports

Grades: 9-12 Subjects: Biology | AP Biology

Use knowledge of hard clam genotypes and inheritance patterns to cross parents and predict offspring phenotypes.

Center For Coastal Resources Management Annual Report 2021, Center For Coastal Resources Management

Reports

No abstract provided.

Killer From The Deep!, Tor Mowatt-Larssen

Reports

Grades: 6-12 Subjects: Life Science | Ecology

Explore the deep-sea environment and biological adaptations to living in the deep sea through murder-mystery investigation and graphing activities.

Shark Sanctuaries: Habitat And Climate Change, Kaitlyn O'Brien

Reports

Grades: 9-12 Subjects: Biology

Utilize data collected from scientific surveys to explore the abiotic niche of multiple coastal shark species, and evaluate suitable habitats under differing climate change conditions.

Searching For Sea Scallops: The Role Of Science In Fisheries Management, Kaitlyn Clark

Reports

Grades: 6-8 Subjects: Life Science | Biology

Students will collect data on populations of sea scallops and then use those data to provide recommendations for sustainably managing the fishery in the next fishing year

The Seagrass Is Greener On The Other Side, Lauren Alvaro

Reports

Grades: 9-12 Subjects: Biology

Students will collect data about animals in a seagrass meadow, learn how seagrass density affects species abundance and diversity, and calculate a biodiversity index.