Biomedical Commons^™

Robotics-Assisted Needle Steering For Percutaneous Interventions: Modeling And Experiments, Ali Asadian

Electronic Thesis and Dissertation Repository

Needle insertion and guidance plays an important role in medical procedures such as brachytherapy and biopsy. Flexible needles have the potential to facilitate precise targeting and avoid collisions during medical interventions while reducing trauma to the patient and post-puncture issues. Nevertheless, error introduced during guidance degrades the effectiveness of the planned therapy or diagnosis. Although steering using flexible bevel-tip needles provides great mobility and dexterity, a major barrier is the complexity of needle-tissue interaction that does not lend itself to intuitive control. To overcome this problem, a robotic system can be employed to perform trajectory planning and tracking by manipulation …

Enhanced Diagnostic Accuracy Of Mammograms On A Mobile Device, Sharanya Padmanabhan

Open Access Theses

With the death of a woman every 13 minutes in the US, and one every minute worldwide, due to breast cancer, the need for early detection cannot be overstated. Mammography is a boon for both early detection and screening of breast tumors. It is an imaging system that uses low dose (9mrem) x-rays for examining the breasts, by the electrons reflected from the tissues (thermoelectric effect). However, there are 20% false positives and 10% false negatives in current practice. Hence, there is a critical need for enhancing the accuracy of these mammograms. Towards this, this thesis was aimed at enhancing …

Activity Intent Recognition Of The Torso Based On Surface Electromyography And Inertial Measurement Units, Zhe Zhang

Masters Theses 1911 - February 2014

This thesis presents an activity mode intent recognition approach for safe, robust and reliable control of powered backbone exoskeleton. The thesis presents the background and a concept for a powered backbone exoskeleton that would work in parallel with a user. The necessary prerequisites for the thesis are presented, including the collection and processing of surface electromyography signals and inertial sensor data to recognize the user’s activity. The development of activity mode intent recognizer was described based on decision tree classification in order to leverage its computational efficiency. The intent recognizer is a high-level supervisory controller that belongs to a three-level …

Rbc Lifespan Uncertainty: Models And Anemia Management Robustness, Rui Dai

Masters Theses 1911 - February 2014

This thesis discusses the modeling of uncertainty of red blood cell (RBC) lifespan distribution in patients suffering from Chronic Kidney Disease(CKD) patients, whose anemia is managed through periodic dosing of erythropoietin (EPO).

In healthy individuals, RBCs containing hemoglobin (Hgb) are produced in the bone marrow. When oxygen carried by hemoglobin is transported to human tissues throughout the body, the kidneys sense reduced level of Hgb and secretes EPO that simulates proliferation of red cell precursors and eventually producing red blood cells. However, in CKD patients, their kidneys fail to secrete enough EPO, so that too few of RBCs are produced …

Inkjet Based Personalized Screening Platform For Cancer Therapy, Jorge Ivan Rodriguez

Open Access Theses & Dissertations

The new paradigm of personalized medicine is beginning to affect clinical practice. In particular, many of the advances in genomics and proteomics have made personalized screening and therapeutic inventions possible. On chip, cellomics approaches to screening and intervention are becoming more commonplace. Cancer therapies may benefit from the rise in `-omics' technologies. In addition, the availability of rapid screening data is crucial to mitigate cancer propagation and increase the possibility of patient recovery. This study is an endeavor to develop a cellomic anticancer drug screening process based on inkjet printing. Previous research has demonstrated that inkjet based screening can reliably …

Printable Biodegradable Hydrogel For Skin Wound Dressing Using Inkjet Printing Technology, Maria G. Yanez

Open Access Theses & Dissertations

Chronic wounds are becoming more frequent. Foot ulcers affect approximately 10% - 15% of patients with diabetes throughout their lifetimes, and by 2025, it is estimated the prevalence of diabetes will be 250 million people in the worldwide. There is increased potential for patients with peripheral neuropathy and peripheral vascular disease to suffer more foot injuries. These conditions reduce the normal pain sensations and healing of minor traumas, allowing the development of chronic non-healing ulcers, often preceding lower-extremity amputation. These types of wounds are very difficult to treat and sometimes take months or even years to heal because of many …

Manufacturing Nerve Guidance Conduits By Stereolithography For Use In Peripheral Nerve Regeneration, Mireya Aidee Perez

Open Access Theses & Dissertations

Nerve regeneration techniques have been studied in great depth in recent years. Peripheral nerve injuries, in particular, can be caused by accidents, falls, athletic injuries, etc. Current methods of repair include direct suturing of the 2 injured nerve ends or the use of autografts, when a nerve section is taken from another area of the body. Both methods have a series of limitations which have led researchers to study alternative methods of repair. Nerve guidance conduits may provide a viable solution because they can be modified and adapted to the patient's needs. Some conduits already exist on the market and …

Multi-Mode Self-Referencing Surface Plasmon Resonance Sensors, Jing Guo

Theses and Dissertations--Electrical and Computer Engineering

Surface-plasmon-resonance (SPR) sensors are widely used in biological, chemical, medical, and environmental sensing. This dissertation describes the design and development of dual-mode, self-referencing SPR sensors supporting two surface-plasmon modes (long- and short-range) which can differentiate surface binding interactions from bulk index changes at a single sensing location. Dual-mode SPR sensors have been optimized for surface limit of detection (LOD). In a wavelength interrogated optical setup, both surface plasmons are simultaneously excited at the same location and incident angle but at different wavelengths. To improve the sensor performance, a new approach to dual-mode SPR sensing is presented that offers improved differentiation …

Modulation Of Cell-Matrix Interaction For Cryopreservation Of Engineered Tissue, Angela Christine Seawright

Open Access Theses

Long term preservation of functional engineered tissues can significantly advance tissue engineering industry and regenerative medicine. Several preservation techniques have been proposed and investigated for this purpose, and cryopreservation is a leading candidate. While tissues are cryopreserved, ice forms in both the extracellular and intracellular spaces and causes freezing-induced spatiotemporal deformation of the tissue. During this process the cells undergo dehydration by the freezing-induced osmotic pressure difference and mechanical deformation, transmitted through cell-extracellular matrix adhesions. However, the significance and interaction of these cellular level transport and mechanics processes are not well understood. Therefore, this study aims to establish mechanistic understanding …

Modeling Tools For Conformal Orthotic Devices, Steven David Riddle

Open Access Theses

The purpose of this thesis is to advance the design of conformal orthotic devices through the development of two modeling tools to address knowledge gaps in the field.

The field of human orthotics has been continually troubled by identifying successful methods of harnessing devices to the body. Past orthotics have utilized a rigid framework with minimal degrees of freedom (DOFs) driven by hard actuators attached to the body at select anchor points. Many devices design the structure and anchor points such that they reduce the degrees of freedom of a targeted joint, limiting the user's mobility and often causing the …

Effects Of Blood Flow On The Heating Of Cardiac Stents Due To Radio Frequency Fields, Nate Ian Elder

Open Access Theses

A safety concern during MRI scans with implanted medical devices is heating induced by the incident RF field. This research was performed to better understand the heating of cardiac stents during MRI. Heating of cardiac stents tends to occur at their ends. The temperature rise will be affected by blood flow through the lumen of the stent. In this work, an experiment was performed to simulate heating of a cardiac stent in the presence of blood flow during exposure to the electric field induced by a 64 MHz magnetic field, which corresponds to MRI at 1.5 T. The test procedure …

Vibrational Photoacoustic Tomography: Deep Tissue Imaging With Biomarker Sensitivity, Rui Li

Open Access Theses

As a molecular and functional imaging modality, photoacoustic imaging has been applied to animals or human organs such as breast, brain and skin. Till now, the contrast mechanism of photoacoustic imaging is mainly based on electronic absorption in visible and near infrared region. Inherent molecular vibration offers a contrast mechanism for chemical imaging in a label free manner. In vibrational microscopy based on either infrared absorption or Raman scattering, the imaging depth is limited to the ballistic photon mean free path, which is a few hundred microns in a biological sample. Owing to much weaker acoustic scattering in tissues as …

Detection Of Brain Abnormalities In Football Players Through Diffusion Weighted Imaging, Allan Emilio Diaz Gaez

Open Access Theses

Depression and cognitive impairment are commonly found in retired football players. Although they receive high magnitude hits to the head, the majority of the hits are sub-concussive, resulting in no clinical symptoms. Recent work using functional magnetic resonance (fMRI) and neurocognitive testing confirms that blows, causing changes in brain function, might not necessarily result in clinical diagnosis of concussion. Furthermore, cognitive deficiency in football players may be attributed to repetitive sub-concussive blows to the head. Diffusion weighted imaging (DWI) has previously been utilized to detect white matter (WM) abnormalities in mild traumatic brain injury (mTBI) patients, including those who have …

The Perceptual Salience Of Amplitude Modulated Cortical Stimulation: Peak Equivalence Or Rms Equivalence?, Oliver Brian Regele

Open Access Theses

Intracortical microstimulation (ICMS) is a method of electrically stimulating the primary motor, visual, somatosensory and auditory cortices in the brain. The goal is to replace deficient sensory function in cases such as deafness, blindness and paralysis. However these neural prosthetics have not made the full transition to clinical trials due to a lack of sufficient investigation into the optimal stimulation waveforms. Sinusoidally amplitude modulated (SAM) signals have been shown to be important to sensory systems, yet have not been fully explored as a stimulation waveform for stimulating cortical tissue.

This work represents an investigation into the detection characteristics of electrical …

Recruitment Of The Intracellular Ca2+ By Ultrashort Electric Stimuli: The Impact Of Pulse Duration, Iurii Semenov, Shu Xiao, Olga N. Pakhomova, Andrei G. Pakhomov

Bioelectrics Publications

Nanosecond-duration electric stimuli are distinguished by the ability to permeabilize intracellular membranes and recruit Ca²⁺ from intracellular stores. We quantified this effect in non-excitable cells (CHO) using ratiometric Ca²⁺ imaging with Fura-2. In a Ca²⁺-free medium, 10-, 60-, and 300-ns stimuli evoked Ca2⁺ transients by mobilization of Ca²⁺ from the endoplasmic reticulum. With 2 mM external Ca²⁺, the transients included both extra- and intracellular components. The recruitment of intracellular Ca²⁺ increased as the stimulus duration decreased. At the threshold of 200–300 nM, the transients were amplified by calcium-induced calcium release. We …

The Anti-Angiogenic Effects Of Sparstolonin B, Henry Rhodes Bateman

Theses and Dissertations

Sparstolonin B (SsnB) is a novel bioreactive compound isolated from Sparganium stoloniferum, an herb historically used in Traditional Chinese Medicine as an anti-tumor agent. SsnB has demonstrated anti-inflammatory properties, inhibiting Toll-like receptor mediated inflammation in isolated macrophages and in mice. Angiogenesis, the process of new capillary formation from existing blood vessels, is dysregulated in many pathological disorders, including atherosclerosis, diabetic retinopathy, and tumor growth. The goal of the project was to investigate the anti-angiogenic effects of SsnB.

The first part of the project utilized in vitro functional assays to study how SsnB affected endothelial cells. SsnB inhibited endothelial cell tube …

Study Of The Effects Of Changing Physiological Conditions On Dielectric Properties Of Breast Tissues, Abas Sabouni, Camerin Hahn, Sima Noghanian, Edward Sauter, Tim Weiland

Electrical Engineering Faculty Publications

This paper addresses the changes in the physical characteristics (temperature and water/blood content) of breast tissue under different physiological conditions. We examined ex vivo specimens of breast tissue excised at the time of surgery to study the effects of physiological conditions on dielectric properties. We observed that the dielectric properties strongly depend on tissue physiological state. When the biological tissues undergo physiological changes, such as those due to disease or those induced by external changes such as variations in the environmental temperature, the microscopic processes deviate from their normal state and impact the overall dielectric properties. This suggests that microwave …

Framework For Simulation Of Heterogeneous Mpsoc For Design Space Exploration, Bisrat Tafesse, Venkatesan Muthukumar

Electrical & Computer Engineering Faculty Research

Due to the ever-growing requirements in high performance data computation, multiprocessor systems have been proposed to solve the bottlenecks in uniprocessor systems. Developing efficient multiprocessor systems requires effective exploration of design choices like application scheduling, mapping, and architecture design. Also, fault tolerance in multiprocessors needs to be addressed. With the advent of nanometer-process technology for chip manufacturing, realization of multiprocessors on SoC (MpSoC) is an active field of research. Developing efficient low power, fault-tolerant task scheduling, and mapping techniques for MpSoCs require optimized algorithms that consider the various scenarios inherent in multiprocessor environments. Therefore there exists a need to develop …

Optimization Of Bioprinting Process Using Design Of Experiments (Doe) And Taguchi Method, Maria Veronica Gonzalez

Open Access Theses & Dissertations

At this time there is a need for new fabrication techniques for engineering complex biological structures related to regenerative medicine, in vitro tissue analysis, and pharmaceutical testing with the purpose of placing specific cells in specific target locations. Right now, there is no enough conventional cell seeding methods that can achieve it. In order to achieve it, bio-fabrication, which is a delivery mechanism capable of placing biomaterials, cells, and bioactive macromolecules in specific target locations, comes to play an important role in this area. Among different approaches, bioprinting is one of the most useful processes that use drop-on-demand delivery mechanisms …

Assessment And Evaluation Of The Dynamic Behavior Of Muscles With Special Reference To Subjects With Diabetes Mellitus, Jorge Garza-Ulloa

Open Access Theses & Dissertations

Diabetes mellitus (simply diabetes) is a group of metabolic diseases in which a person has high blood sugar, either because the body does not produce enough insulin, or because cells do not respond to the insulin that is produced. Each year, the costs of diabetes rise. Diabetes and its complications cost our national economy. Two new methods are proposed to measure the diabetes implications in the muscles of lower body: Muscle energy expenditure analysis based on the detection of muscle transition-to-fatigue, and Natural Fuzzy logic method for differential analysis in muscle/joint. Then the results are compared with the traditional method …

Using Multi-Processors To Reconstruct Images With Proton Computed Tomography, Chenwei Xu

Theses Digitization Project

This project will employ the use of multi-processor technology to reconstruct image data as fast as possible. Two-dimensional image reconstruction technique reconstructs images by solving a linear equation: A x x =b, where A is the path matrix of proton histories, b is electron matrix of the image, and x is the matrix of image. One row in matrix A represents one beam. Matrix A consists of a number of beam projections to the image, and each projection consists of a number of beams. Contains source code.

Tpm: Cloud-Based Tele Ptsd Monitor Using Multi-Dimensional Information, Roger Xu, Gang Mei, Guangfan Zhang, Pan Gao, Aaron Pepe, Jiang Li, James D. Westwood (Ed.), Susan W. Westwood (Ed.), Li Felländer-Tsai (Ed.), Randy S. Haluck (Ed.), Richard A. Robb (Ed.), Steven Senger (Ed.), Kirby G. Vosburgh (Ed.)

Electrical & Computer Engineering Faculty Publications

An automated system that can remotely and non-intrusively screen individuals at high risk for Post-Traumatic Stress Disorder (PTSD) and monitor their progress during treatment would be desired by many Veterans Affairs (VAs) as well as other PTSD treatment and research organizations. In this paper, we present an automated, cloud-based Tele-PTSD Monitor (TPM) system based on the fusion of multiple sources of information. The TPM system can be hosted in a cloud environment and accessed through landline or cell phones, or on the Internet through a web portal or mobile application (app).

Development Of Proteomic Characterization And Speciation Techniques Utilizing Tryptic Peptides With Maldi-Tof Ms And Lc-Esi Ms-Ms, Jennifer Marie Kooken

Theses and Dissertations

The characterization of microbes which can be opportunists and pathogens (e.g., methicillin resistant Staphylococcus aureus (MRSA)) is important in understanding and potentially treating diseases caused by various bacterial species. Common genera found in the human skin micro-biome include Micrococcus and Staphylococcus, but there only a limited number of tests to differentiate these genera and/or species. My research reflects methods development from distinguishing one closely related genera from another and then expanded to species identification. Tryptic peptides were analyzed by MALDI TOF MS and the mass profiles compared with those of a reference strain in both genus and species identification. Aconitate …

Linking Obesity To Colorectal Cancer: Recent Insights Into Plausible Biological Mechanisms, Catherine Guffey

Theses and Dissertations

Obesity has emerged as a leading environmental risk factor for the development of CRC. However, the mechanisms underlying this relationship have not yet been fully explained. Recent literature has focused on 1) inflammatory processes, 2) adipokines, and 3) estrogen. Obesity-enhanced inflammation is largely orchestrated by increases in adipose tissue macrophages leading to the secretion of TNF-alpha, MCP-1, and IL-6, all of which are linked to CRC. Adiponectin is decreased with obesity and has been reported to be negatively associated with CRC, while leptin, which is increased, is positively associated with the disease. Estrogen has been shown to influence CRC, although …

Investigation Of Start Domain Proteins In Human Luteinized Cells And Cos-1 Cells, Bo Shi

Theses and Dissertations

After the luteinizing hormone surge of the menstrual cycle, the ovarian follicular granulosa and theca cells terminally differentiate to form the luteal cells of the corpus luteum. During this process known as luteinization, granulosa cells begin to synthesize large quantities of progesterone, a hormone essential for pregnancy. The rate limiting step for the de novo synthesis of pregnenolone (the precursor to progesterone) is the transport of cholesterol from the outer to the inner mitochondrial membrane, a process mediated by STARD1. STARD1 contains a C-terminal lipid binding domain holding one molecule of cholesterol, and an N-terminal domain targeting STARD1 to the …

Osteon-Mimetic Nanocomposite Materials For Bone Regeneration, Ozan Karaman

Theses and Dissertations

The limitations of large bone defect regeneration has brought the focus of Bone Tissue Engineering research on fabricating three-dimensional bone-mimetic grafts that could enhance osteogenesis and vascularization. Osteons composed of apatite-deposited aligned collagen nanofiber layers are the fundamental building blocks of cortical bone. In natural cortical bone, mineralization is mediated by extracellular matrix (ECM) proteins with amino acid sequences rich in glutamic acid. This dissertation is focused on the establishment of a novel biomimetic approach to engineer scaffolds for healing large bone defects.

In the first part, we investigated the effect of calcium phosphate (CaP) deposition on aligned surface-modified nanofibers …

Characterizing Hypoxia And Its Behavioral Effects In 3-Dimensional Cell Aggregates, Matthew Lorincz Skiles

Theses and Dissertations

Cell transplantation can be considered a regenerative therapy, an intervention which attempts to replace or restore the function of compromised tissue by harnessing innate properties of cells that cannot be replicated artificially. For such therapies to succeed, it will be necessary to understand and closely match the physiological conditions that govern cell behaviors in vivo. One important factor is low oxygen tension, termed hypoxia, which is often overlooked in vitro. Because oxygen insufficiency can lead to cell death, hypoxia has traditionally been viewed as a negative condition. However, hypoxia can also serve as a potent regulator of crucial cell behaviors …

Mass Spectrometry And Tandem Mass Spectrometry Characterization Of Protein Patterns, Protein Markers And Whole Proteomes For Pathogenic Bacteria, Jennifer Intelicato-Young

Theses and Dissertations

There have been many recent reviews published on MALDI-TOF MS (matrix assisted laser desorption/ionization time-of-flight) MS (mass spectrometry) for identification of bacteria particularly with relevance to clinical microbiology. MALDI-TOF MS is now a mature technique for bacterial identification with great promise. The purpose of this review is to put into perspective MALDI-TOF MS and other widely used mass spectrometry methods for characterization of proteins. MALDI-TOF MS is used for rapid determination of a mass pattern of proteins for bacterial characterization; these proteins

are generally not identified. Alternatively, after gel separation, MALDI TOF-TOF MSMS (tandem mass spectrometry) or on-line LC-ESI MS-MS …

Role Of Microrna-155 In A Mouse Model Of Colon Cancer., Claire Mitchell Midyette

Theses and Dissertations

Colorectal cancer remains the third most common malignancy and the fourth most common cause of cancer mortality worldwide. Dysregulated miRNA levels are associated with several types of malignancies and may serve as important biomarkers and/or therapeutic targets in colorectal cancer. We examined the role of miRNA-155 on tumorigenesis and associated symptoms using a well-characterized mouse model of colorectal cancer. C57BL/6 wild-type mice and miRNA-155-/- mice (n=7-13 group) were given a single injection of AOM (10mg/Kg) followed by 3 cycles of DSS (2% in the water for 1 week followed by 2 weeks of plain water). A C57BL/6 wild-type group that …

Sediment And Nutrient Behaviour On The River Bandon, Ireland, S. T. Harrington, Joseph R. Harrington

Conference Papers

This paper presents aspects of sediment and nutrient behaviour on the River Bandon which is located in the South Western River Basin District in Ireland; it is a relatively large sized river catchment in an Irish context with a catchment area of 608 km2. The river catchment is primarily agricultural with some pockets of urban development. The river is prone to flooding on stretches, features a number of special areas of conservation and is distinguished by both suspended and bed load transport. Continuous monitoring of turbidity commenced in February 2010. Manual sampling and testing for suspended sediment concentration and a …