Functional Effects Of Calcium Regulation Of Thin Filaments At Single Particle Resolution,
2016
South Dakota State University
Functional Effects Of Calcium Regulation Of Thin Filaments At Single Particle Resolution, Christopher Solis-Ocampo
Electronic Theses and Dissertations
Heart disease is the leading cause of death in the United States. Understanding heart function at the molecular level is critical for developing of more effective treatments. In the cardiac muscle, the thin filament is composed by troponin (Tn), tropomyosin (Tm), and F-actin. It provides Ca2+-dependent regulation of contraction by modulating myosin attachment and force generation in a cooperative scheme. However, this mechanism remains unclear. To understand thin filament activation, we studied the binding and functional properties of Tn and Tm to F-actin at single particle resolution by employing fluorescence image colocalization, in vitro motility assays, and Förster resonance energy …
Structure And Biological Activity Of A D3g Mutation In The Human Mitochondrial Chaperonin Hsp60,
2016
University of Texas at El Paso
Structure And Biological Activity Of A D3g Mutation In The Human Mitochondrial Chaperonin Hsp60, Jihui Li
Open Access Theses & Dissertations
Proteins are essential components in all cellular activities, including signal transduction, gene expression regulation, immune response, structural support and many others. Following their synThesis on the ribosome, proteins need to fold into their precise three-dimensional structure to obtain functionality. If they fold incorrectly they are prone to aggregation and cause a wide range of neurodegenerative diseases. Some proteins are capable of folding without assistance but others need help from protein complexes known as chaperonins. Chaperonins are a family of proteins that assemble into barrel-shaped cages the create a protected chamber for misfolded proteins to refold into their biologically active state. …
Cannabinoid Receptor Interacting Protein Suppresses Agonist-Driven Cb1 Receptor Internalization And Regulates Receptor Replenishment In An Agonist-Biased Manner,
2016
Wake Forest University
Cannabinoid Receptor Interacting Protein Suppresses Agonist-Driven Cb1 Receptor Internalization And Regulates Receptor Replenishment In An Agonist-Biased Manner, Lawrence C. Blumes, Sandra Leone-Kabler, Deborah J. Luessen, Glenn S. Marrs, Erica Lyons, Caroline E. Bass, Rong Chen, Dana E. Selley, Allyn C. Howlett
Neurology Publications
Cannabinoid receptor interacting protein 1a (CRIP1a) is a CB1 receptor (CB1R) distal C-terminus-associated protein that modulates CB1R signaling via G proteins, and CB1R down-regulation but not desensitization (Blume et al. [2015] Cell Signal., 27, 716-726; Smith et al. [2015] Mol. Pharmacol., 87, 747-765). In this study, we determined the involvement of CRIP1a in CB1R plasma membrane trafficking. To follow the effects of agonists and antagonists on cell surface CB(1)Rs, we utilized the genetically homogeneous cloned neuronal cell line N18TG2, which endogenously expresses both CB1R and CRIP1a, and exhibits a well-characterized endocannabinoid signaling system. We developed stable CRIP1a-over-expressing and CRIP1a-siRNA-silenced knockdown …
Characterization Of Catecholamine Receptors And Transporters In Murine Macrophages,
2016
University of Richmond
Characterization Of Catecholamine Receptors And Transporters In Murine Macrophages, Elizabeth Gonye
Honors Theses
Macrophages are a critical part of the immune response. When circulating monocytes move into tissues they differentiate int macrophages to mount the first line of defense against pathogens.
Towards Structural Determination Of Human Α1-Glycine Receptor Allostery,
2016
Duquesne University
Towards Structural Determination Of Human Α1-Glycine Receptor Allostery, Rathna Jyothi Veeramachaneni
Electronic Theses and Dissertations
Recent advances in technology have led to the determination of numerous notable structures of membrane proteins. While they provide valuable information about the structure of membrane proteins these studies often provide static images with potentially limited dynamics, and structural determination often requires truncation of flexible regions, and often utilizes bacterial homologs given the need for stable, heterologous overexpression. In order to better understand allostery at a molecular level, state-dependent crosslinking studies coupled with multidimensional mass spectrometry (MS) were conducted on glycine receptor (GlyR) stabilized in different allosteric states. Predominant allosteric states were stabilized using wild type or mutated receptor in …
Repositioning Of Drugs Using Open-Access Data Portal Dtome: A Test Case With Probenecid (Review),
2016
New York Medical College
Repositioning Of Drugs Using Open-Access Data Portal Dtome: A Test Case With Probenecid (Review), Mohammad U. Ahmed, Dylan J. Bennett, Tze-Chen Hsieh, Barbara B. Doonan, Saba Ahmed, Joseph M. Wu
NYMC Faculty Publications
The one gene-one enzyme hypothesis, first introduced by Beadle and Tatum in the 1940s and based on their genetic analysis and observation of phenotype changes in Neurospora crassa challenged by various experimental conditions, has witnessed significant advances in recent decades. Much of our understanding of the association between genes and their phenotype expression has benefited from the completion of the human genome project, and has shown continual transformation guided by the effort directed at the annotation and characterization of human genes. Similarly, the idea of one drug‑one primary disease indication that traditionally has been the benchmark for the labeling and …
Ice-Nucleating Particle Emissions From Biomass Combustion And The Potential Importance Of Soot Aerosol,
2016
Colorado State University
Ice-Nucleating Particle Emissions From Biomass Combustion And The Potential Importance Of Soot Aerosol, E. J.T. Levin, G. R. Mcmeeking, P. J. Demott, C. S. Mccluskey, C. M. Carrico, S. Nakao, T. Jayarathne, E. A. Stone, C. E. Stockwell, R. J. Yokelson, S. M. Kreidenweis
Chemistry and Biochemistry Faculty Publications
Ice-nucleating particles (INPs) are required for initial ice crystal formation in clouds at temperatures warmer than about -36°C and thus play a crucial role in cloud and precipitation formation. Biomass burning has been found to be a source of INPs in previous studies and is also a major contributor to atmospheric black carbon (BC) concentrations. This study focuses on isolating the BC contribution to the INP population associated with biomass combustion. Emissions of condensation mode INPs from a number of globally relevant biomass fuels were measured at -30°C and above water saturation as fires progressed from ignition to extinguishment in …
Agricultural Fires In The Southeastern U.S. During Seac4Rs: Emissions Of Trace Gases And Particles And Evolution Of Ozone, Reactive Nitrogen, And Organic Aerosol,
2016
Georgia Institute of Technology
Agricultural Fires In The Southeastern U.S. During Seac4Rs: Emissions Of Trace Gases And Particles And Evolution Of Ozone, Reactive Nitrogen, And Organic Aerosol, Xiaoxi Liu, Y. Zhang, L. G. Huey, R. J. Yokelson, Y. Wang, J. L. Jimenez, P. Campuzano-Jost, A. J. Beyersdorf, D. R. Blake, Y. Choi, J. M. St. Clair, J. D. Crounse, D. A. Day, G. S. Diskin, A. Ried, S. R. Hall, T. F. Hanisco, L. E. King, S. Meinardi, T. Mikoviny, B. B. Palm, J. Peischl, A. E. Perring, I. B. Pollack, T. B. Ryerson, G. Sachse, J. P. Schwarz, I. J. Simpson, D. J. Tanner, K. L. Thornhil, K. Ullmann, R. J. Weber, P. O. Wennberg
Chemistry and Biochemistry Faculty Publications
Emissions from 15 agricultural fires in the southeastern U.S. were measured from the NASA DC-8 research aircraft during the summer 2013 Studies of Emissions and Atmospheric Composition, Clouds and Climate Coupling by Regional Surveys (SEAC4RS) campaign. This study reports a detailed set of emission factors (EFs) for 25 trace gases and 6 fine particle species. The chemical evolution of the primary emissions in seven plumes was examined in detail for ~1.2 h. A Lagrangian plume cross-section model was used to simulate the evolution of ozone (O3), reactive nitrogen species, and organic aerosol (OA). Observed EFs are generally consistent with previous …
Rapidly Evolving Ultrafine And Fine Mode Biomass Smoke Physical Properties: Comparing Laboratory And Field Results,
2016
New Mexico Institute of Mining and Technology
Rapidly Evolving Ultrafine And Fine Mode Biomass Smoke Physical Properties: Comparing Laboratory And Field Results, Christian M. Carrico, Anthony J. Prenni, Sonia M. Kreidenweis, Ezra J.T. Levin, Christina S. Mccluskey, Paul J. Demott, Gavin R. Mcmeeking, Shunsuke Nakao, Chelsea Stockwell, Robert J. Yokelson
Chemistry and Biochemistry Faculty Publications
Combining field and laboratory results, we present biomass smoke physical properties. We report sub-0.56 µm diameter (Dp) particle sizing (fast mobility particle sizer, FMPS) plus light absorption and scattering at 870nm (photoacoustic extinctiometer). For Dp<200 >nm, the FMPS characterized sizing within ±20% compared to standards. As compared to the traditional scanning mobility particle sizer, the FMPS responded most accurately to single-mode polydispersions with mean Dp<200 >nm, which characterized the smoke sampled here. Smoke was measured from laboratory fresh emissions (seconds to hours old), the High Park Fire (hours to<1 >day), and from regional biomass burning (several days). During a High …
Planning, Implementation, And Scientific Goals Of The Studies Of Emissions And Atmospheric Composition, Clouds And Climate Coupling By Regional Surveys (Seac4Rs) Field Mission,
2016
University of Colorado Boulder
Planning, Implementation, And Scientific Goals Of The Studies Of Emissions And Atmospheric Composition, Clouds And Climate Coupling By Regional Surveys (Seac4Rs) Field Mission, Owen B. Toon, Hal Maring, Jack Dibb, Richard Ferrare, Daniel J. Jacob, Eric J. Jensen, Z. Johnny Luo, Gerald G. Mace, Laura L. Pan, Lenny Pfister, Karen H. Rosenlof, Jens Redemann, Jeffrey S. Reid, Hanwant B. Singh, Anne M. Thompson, Robert Yokelson, Patrick Minnis, Gao Chen, Kenneth W. Jucks, Alex Pszenny
Chemistry and Biochemistry Faculty Publications
The Studies of Emissions and Atmospheric Composition, Clouds and Climate Coupling by Regional Surveys (SEAC4RS) fieldmission based at Ellington Field, Texas, during August and September 2013 employed the most comprehensive airborne payload to date to investigate atmospheric composition over North America. The NASA ER-2, DC-8, and SPEC Inc. Learjet flew 57 science flights fromthe surface to 20 km. The ER-2 employed seven remote sensing instruments as a satellite surrogate and eight in situ instruments. The DC-8 employed 23 in situ and five remote sensing instruments for radiation, chemistry, and microphysics. The Learjet used 11 instruments to explore cloud microphysics. SEAC4RS …
Investigating And Expanding The Functionality Of Rna Catalysts: Studies Of The Hepatitis Delta Virus, The Hammerhead, And The Aminoacyl-Trna Synthetase-Like Ribozymes,
2016
Purdue University
Investigating And Expanding The Functionality Of Rna Catalysts: Studies Of The Hepatitis Delta Virus, The Hammerhead, And The Aminoacyl-Trna Synthetase-Like Ribozymes, Ji Chen
Open Access Dissertations
Ribozymes, just like protein enzymes, catalyze diverse chemical reactions. The first goal of this dissertation is to understand the mechanism of ribozyme-mediated phosphodiester cleavage reaction. Biochemical assays and X-ray crystallography were used for probing the active site of two small self-cleaving ribozymes, the hepatitis delta virus (HDV) ribozyme and the hammerhead ribozyme. Results presented here suggest that divalent metal ions play critical roles in the catalytic mechanisms of both the HDV and the hammerhead ribozymes. In the HDV ribozyme, the result is consistent with an active site Mg2+ being directly involved in catalysis. In the hammerhead ribozyme, however, Mg2+ ions …
A Disease Spectrum For Itpa Variation: Advances In Biochemical And Clinical Research,
2016
Eastern Washington University
A Disease Spectrum For Itpa Variation: Advances In Biochemical And Clinical Research, Nicholas E. Burgis
Chemistry and Biochemistry Faculty Publications
Human ITPase (encoded by the ITPA gene) is a protective enzyme which acts to exclude noncanonical (deoxy) nucleoside triphosphates ((d)NTPs) such as (deoxy)inosine 5′-triphosphate ((d)ITP), from (d)NTP pools. Until the last few years, the importance of ITPase in human health and disease has been enigmatic. In 2009, an article was published demonstrating that ITPase deficiency in mice is lethal. All homozygous null offspring died before weaning as a result of cardiomyopathy due to a defect in the maintenance of quality ATP pools. More recently, a whole exome sequencing project revealed that very rare, severe human ITPA mutation results in early …
Assembly And Degradation Of A Trimeric Membrane Protein Acrb,
2016
University of Kentucky
Assembly And Degradation Of A Trimeric Membrane Protein Acrb, Qian Chai
Theses and Dissertations--Chemistry
Multidrug efflux pumps are membrane proteins that actively transport foreign objects out of cells. The active efflux of these pumps is a critical self-defense mechanism that enables the survival of bacteria under hostile environments. Efflux pump AcrB is a member of the Resistance-Nodulation-Division (RND) super family. In E. coli, it associates with periplasmic protein AcrA and outer membrane channel TolC to extrude a variety of noxious compounds out of cell from both the cytoplasm and the periplasm. My dissertation research focused on two aspects of this multidrug efflux pump: the oligomerization process during the biogenesis of AcrB and its …
Conditional Cardiac-Specific Akap13 Knockout Induces Sex Dependent Biventricular Dilated Cardiomyopathy With Sarcomeric And Mitochondrial Defects,
2016
Virginia Commonwealth University
Conditional Cardiac-Specific Akap13 Knockout Induces Sex Dependent Biventricular Dilated Cardiomyopathy With Sarcomeric And Mitochondrial Defects, Kimberlyn M. Baig-Ward
Theses and Dissertations
Heart disease is a complex and heterogeneous disease. Notably, studies have demonstrated gender differences in the expression and types of cardiovascular disease, such as dilated cardiomyopathy (DCM), a major underlying cause of heart failure. Previously we showed that loss of A-Kinase Anchoring Protein 13 (Akap13), a unique proto-oncogene and estrogen receptor modulator, resulted in enlarged embryonic hearts, defective cardiac sarcomere formation, and embryonic lethality in mice. Data have also shown cAMP-dependent Protein Kinase A (PKA) to be involved in DCM pathophysiology. Given the established role of AKAP13 in cell signaling, its ability to bind and modulate ligand-activated nuclear hormone …
Variance Of The Amyloid Beta Peptide As A Metric For The Diagnosis Of Alzheimer's Disease,
2016
University of Kentucky
Variance Of The Amyloid Beta Peptide As A Metric For The Diagnosis Of Alzheimer's Disease, Christina Beckett
Theses and Dissertations--Medical Sciences
Alzheimer’s disease (AD) is the most prevalent neurodegenerative disorder associated with aging. AD is by far the best understood and most studied neurodegenerative disease. Substantial advances have been made over the last decade, however it is debatable how much closer we are to a clinically useful therapy. A long standing goal in the AD field has been to improve the accuracy of early detection, with the assumption that the ability to intervene earlier in the disease process will lead to a better clinical outcome. Major facets of this effort have been the continued development and improvement of AD biomarkers, with …
Anti Mullerian Hormone: Ovarian Response Indicator In Young Patients Receiving Long Gnrh Agonist Protocol For Ovarian Stimulation,
2016
Aga Khan University
Anti Mullerian Hormone: Ovarian Response Indicator In Young Patients Receiving Long Gnrh Agonist Protocol For Ovarian Stimulation, Zehra Jamil, Syeda Sadia Fatima, Rehana Rehman, Faiza Alam, Sara Arif
Department of Biological & Biomedical Sciences
Objective: Anti Mullerian hormone (AMH) is gaining place as ovarian marker, chiefly in infertility assistance. We explored its correlation with oocytes retrieval after long GnRH agonist protocol for stimulation, in younger and older infertile population.
Methods: This retrospective analysis compiled data of 166 females, receiving ICSI treatment from June 2014 to March 2015. Serum FSH, LH, Estadiol, AMH and antral follicle count were assessed. Outcomes were measured as good (5 to 19 oocytes) and bad responders.
Results: Higher discriminatory power of AMH (AUROC; 0.771; p < 0.05) was seen in comparison to FSH (0.692; p < 0.05) and AFC (0.690; p < 0.01). AMH reported strongest association with oocyte retrieved (odds ratio of 15.06). Subgroup analysis reported 68.6 % risk of bad response with AMH levels of less than 1.37ng/ml. This association was observed more significant in young infertile patients <35 year of age (r=0.245; p=0.012) versus older population >35 year (r=0.169; p>0.05).
Conclusion: Our study reaffirms that serum AMH correlates well with …
Anti-Mullerian Hormone: Above And Beyond Conventional Ovarian Reserve Markers,
2016
Aga Khan University
Anti-Mullerian Hormone: Above And Beyond Conventional Ovarian Reserve Markers, Zehra Jamil, Syeda Sadia Fatima, Khalid Ahmed, Rabia Malik
Department of Biological & Biomedical Sciences
Management of ovarian dysfunctions requires accurate estimation of ovarian reserve (OR). Therefore, reproductive hormones and antral follicle count (AFC) are assessed to indicate OR. Serum anti-Mullerian hormone (AMH) is a unique biomarker that has a critical role in folliculogenesis as well as steroidogenesis within ovaries. Secretion from preantral and early antral follicles renders AMH as the earliest marker to show OR decline. In this review we discuss the dynamics of circulating AMH that remarkably vary with sex and age. As it emerges as a marker of gonadal development and reproductive disorders, here we summarize the role of AMH in female …
Students' Perception Of Educational Environment At Aga Khan University Medical College, Karachi, Pakistan,
2016
Aga Khan University
Students' Perception Of Educational Environment At Aga Khan University Medical College, Karachi, Pakistan, Rehana Rehman, Kulsoom Ghias, Syeda Sadia Fatima, Mehwish Hussain, Faiza Alam
Department of Biological & Biomedical Sciences
Objective: To assess educational environment in Aga Khan University Medical College (AKUMC) by Dundee Ready Educational Environmental Measure (DREEM) scale.
Methods: A cross-sectional survey of students at the AKUMC with simple random sampling was carried out from June 2014 till March 2015. Responses in five subscales were used to calculate DREEM scores.
Results: The average DREEM score was 125.77±16.8 with a reliability of 91.3%. With regards to subscales, on the 12-item students' perceptions of learning (PoL) subscale, the maximum score was 48; 11 items of students' perceptions of teachers (PoT) had a maximum score of 44; students' academic self-perceptions (ASP) …
Use Of Follicular Output Rate To Predict Intracytoplasmic Sperm Injection Outcome,
2016
Aga Khan University
Use Of Follicular Output Rate To Predict Intracytoplasmic Sperm Injection Outcome, Rehana Rehman, Rozina Mustafa, Mukhtiar Baig, Sara Arif, Muhammad Faisal Hashmi
Department of Biological & Biomedical Sciences
Background: The measurement of follicular output rate (FORT) has been proposed as a good indicator for evaluating follicular response to the exogenous recombinant folliclestimulating hormone (rFSH). This places FORT as a promising qualitative marker for ovarian function. The objective of the study was to determine FORT as a predictor of oocyte competence, embryo quality and clinical pregnancy after intracytoplasmic sperm injection (ICSI).
Materials and Methods: This prospective study was carried out on a group of infer- tile females (n=282) at Islamabad Clinic Serving Infertile Couples, Islamabad, Pakistan, from June 2010 till August 2013. Downregulated females were stimulated in injection gonadotropins …
Kcnq1 Rs2237895 Polymorphism Is Associated With Gestational Diabetes In Pakistani Women,
2016
Aga Khan University
Kcnq1 Rs2237895 Polymorphism Is Associated With Gestational Diabetes In Pakistani Women, Syeda Sadia Fatima, Bushra Chaudhry, Taseer Ahmed Khan, Saad Farooq
Department of Biological & Biomedical Sciences
Background and Objective: Genetic studies on gestational diabetes (GDM) are relatively scarce; moreover, limited data is available for KCNQ1 polymorphism in Pakistani pregnant women. We aimed to determine the frequency of KCNQ1 rs2237895 in GDM and normal pregnant controls and its association with GDM-related phenotypes.
Methods: A total of 637 pregnant females (429 controls and 208 cases) in their second trimester were classified according to the International Association of the Diabetes and Pregnancy Study criteria in this study. Their blood samples were genotyped for KCNQ1 SNP rs2237895 using PCR-RFLP method and sequencing. Fasting and two hour-post glucose load blood levels, …
