Oceanography and Atmospheric Sciences and Meteorology Commons^™

Foraminiferal Assemblages On Sediment And Reef Rubble At Conch Reef, Florida Usa, Christy Michelle Stephenson

USF Tampa Graduate Theses and Dissertations

Benthic foraminiferal assemblages are widely used to interpret responses of the benthic communities to environmental stresses. This study compares epibiotic foraminiferal assemblages, collected from reef rubble, with those from reef sediments. The study site, Conch Reef, is the site of the Aquarius Underwater Habitat research facility and includes protected areas used only for scientific studies. Although a number of studies have enumerated foraminiferal taxa from the Florida reef tract, no projects have focused on the assemblages that occur at Conch Reef.

Sediment and reef rubbles samples were collected via SCUBA from a depth range of 13 to 26 m during …

Assessment Of Fertility Potential In Bottlenose Dolphins (Tursiops Truncatus): An Elisa-Based Biomarker Analysis, Leslie Schwierzke Wade

USF Tampa Graduate Theses and Dissertations

As apex predators in coastal systems, bottlenose dolphins (Tursiops truncatus) are susceptible to persistent organic pollutant (POP) accumulation and retention over time, which has prompted continued interest in understanding the extent to which contaminant body burdens or other stressors are sufficient to cause adverse sublethal effects on energetic fitness, immune function, or reproduction. Increasing our knowledge of reproductive endocrinology in bottlenose dolphins may provide insight into changes in reproductive rates, thereby expanding the capacity to assess conservation status. This study used the Enzyme-Linked ImmunoSorbent Assay (ELISA) technique to examine peptide fertility hormones [inhibin A, inhibin B and anti-Müllerian …

Dynamics Of Stony Coral Assemblages On Patch Reefs Of The Upper Florida Reef Tract, Including Biscayne National Park, Amy Wallace

USF Tampa Graduate Theses and Dissertations

The patch reefs located in Biscayne National Park (BNP) are some of the most northern reefs of the Florida reef system. The focus of my study is seven patch reefs that were first surveyed annually between 1977 and 1981, revealing 8% - 28% cover by scleractinian corals. An assessment of BNP patch reefs completed in 2000 reported that coral cover had decreased to approximately 0.4% - 10%. The once dominant species in the Florida reef tract, Acropora palmata and A. cervicornis, have rapidly declined over time and were not found in any transects during the 2000 survey.

This study is …

Sex And The Seas: Gene Transfer Agents, Elizabeth Young

USF Tampa Graduate Theses and Dissertations

Gene Transfer Agents (GTAs) are phage-like pthesiss that are produced by many alpha proteobacteria in late stationary growth phase and are capable of transferring chromosomal genes (termed "constitutive transduction"). Examination of alpha proteobacterial genomic sequences indicated widespread occurrence of GTA-like elements. The goal of this study was to investigate gene transfer potential of GTAs of marine alpha proteobacteria in culture as well as in natural marine environments. Another goal was to determine the potential of bacterial symbionts from zooxanthellae and coral to genetically transfer beneficial properties between symbionts. Ruegeria mobilis (ID 45A6) was isolated from cultures of the coral endosymbiotic …

Fate Of Mississippi River Diverted Nitrate On Vegetated And Non-Vegetated Coastal Marshes Of Breton Sound Estuary, Christine M. Vanzomeren

LSU Master's Theses

The Caernarvon Diversion meters Mississippi River water into coastal marshes of Breton Sound. Elevated levels of nitrogen in river water have sparked concerns that nutrient loading may affect marsh resilience and belowground biomass, as evidence from several marsh fertilization studies. These concerns resulted from observation that fresh and brackish Breton Sound marshes suffered extensive damage from Hurricane Katrina. The goal of this study is to determine the fate of nitrate (the dominant inorganic nitrogen form in the Mississippi River) in Breton Sound Estuary marshes. We hypothesized that most nitrate would be removed by denitrification and that nitrate loading would not …

Underwater Hearing In The Loggerhead Turtle (Caretta Caretta): A Comparison Of Behavioral And Auditory Evoked Potential Audiograms, Kelly Martin

USF Tampa Graduate Theses and Dissertations

Methods for collecting behavioral audiograms are often time consuming and require trained, captive subjects. It is more practical to measure hearing sensitivity using electrophysiological methods, such as auditory evoked potential (AEP) testing, in which electrodes measure action potentials in response to acoustic stimuli. These data can be collected in a matter of hours. However, results should be verified through behavioral testing. Current knowledge of marine turtle auditory abilities is based on a few electrophysiological tests. The purpose of this study was to collect and compare behavioral and auditory evoked potential audiograms in a captive adult loggerhead turtle (Caretta caretta …

Stable Isotope Studies Of Paleoenvironment And Paleoclimate From Afar, Ethiopia, Zelalem K. Bedaso

USF Tampa Graduate Theses and Dissertations

The sedimentary deposits of the Hadar Formation at Dikika and the Mount Galili Formation at Galili preserve a wealth of paleoenvironmental and paleoclimatic records spanning the last 5.29 Ma. Stable carbon and oxygen isotopic compositions of herbivore tooth enamel were analyzed for more than 600 specimens of 15 different taxa from 10 stratigraphic intervals. The application of carbon and oxygen isotopes here aims principally at reconstructing shifts in the relative abundance of C₄ grasses, and its implications for climate indicators including temperature, aridity, and seasonality. The full range of δ¹³C_enamel values throughout the Plio-Pleistocene signifies a …

Microbial Landscapes Of Corals And Ctenophores, Camille Arian Daniels

USF Tampa Graduate Theses and Dissertations

As technology and engineering allow mankind to survey nature at finer scales, the importance of bacteria has been elucidated in their metabolic diversity, ability to transfer genetic information, involvement in biogeochemical cycling, and sheer abundance. With an individual domain of life unto themselves, this diverse group of microorganisms plays an integral role in facilitating life on land and in the oceans, and is second only to viruses in abundance on Earth. They carve niches in a wide range of environments, including those inhospitable to other life forms, and reside in concert or to the detriment of other microbes and/or hosts …

Aerosol Properties Over The Indo‐Gangetic Plain: A Mesoscale Perspective From The Tigerz Experiment, D. M. Giles, B. N. Holben, Sachchida N. Tripathi, Thomas F. Eck, W. Wayne Newcomb, Ilya Slutsker, Russell R. Dickerson, Anne M. Thompson, Shana Mattoo, Sheng-Hsiang Wang, Ramesh P. Singh, Aliaksandyr Sinyuk, Joel S. Schafer

Mathematics, Physics, and Computer Science Faculty Articles and Research

High aerosol loading over the northern Indian subcontinent can result in poor air quality leading to human health consequences and climate perturbations. The international 2008 TIGERZ experiment intensive operational period (IOP) was conducted in the Indo-Gangetic Plain (IGP) around the industrial city of Kanpur (26.51 degrees N, 80.23 degrees E), India, during the premonsoon (April-June). Aerosol Robotic Network (AERONET) Sun photometers performed frequent measurements of aerosol properties at temporary sites distributed within an area covering similar to 50 km(2) around Kanpur to characterize pollution and dust in a region where complex aerosol mixtures and semi-bright surface effects complicate satellite retrieval …

Evaluating Methods For Optimizing Classification Success From Otolith Tracers For Spotted Seatrout (Cynoscion Nebulosus) In The Chesapeake Bay, Stacy Kavita Beharry

OES Theses and Dissertations

Identifying the natal sources of fish is an important step in understanding its population dynamics. Adult recruits are often sourced from multiple nursery areas, with good quality locations contributing disproportionately more fish to the adult stock. Because population persistence is strongly influenced by nursery habitat, methods that correctly identify the source of recruits are necessary for effective management. Within the last decade, otolith chemistry signatures have been increasingly used as a natural marker to delineate fish from a mixture of nursery sources. Despite the widespread use of otolith trace element and stable isotope ratios as habitat markers, the statistical approaches …

Lead In Birds, J. Christian Franson, Deborah J. Pain

United States Geological Survey: Staff Publications

Lead is a highly toxic heavy metal that acts as a nonspecific poison affecting all body systems and has no known biological requirement. Absorption of low concentrations may result in a wide range of sublethal effects in animals, and higher concentrations may result in mortality (Demayo et al. 1982).

Lead has been mined and smelted by humans for centuries, but the use of lead-based products increased greatly following the Industrial Revolution. Consequently, lead today is ubiquitous in air, water, and soil, in both urban and rural environments (Eisler 2000). Vertebrates are exposed to lead mainly via inhalation and ingestion. A …

Rapid Wetland Expansion During European Settlement And Its Implication For Marsh Survival Under Modern Sediment Delivery Rates, Matthew L. Kirwan, A. Brad Murray, Jeffrey P. Donnelly, D. Reide Corbett

United States Geological Survey: Staff Publications

Fluctuations in sea-level rise rates are thought to dominate the formation and evolution of coastal wetlands. Here we demonstrate a contrasting scenario in which land-use–related changes in sediment delivery rates drive the formation of expansive marshland, and vegetation feedbacks maintain their morphology despite recent sediment supply reduction. Stratigraphic analysis and radiocarbon dating in the Plum Island Estuary (Massachusetts, United States) suggest that salt marshes expanded rapidly during the eighteenth and nineteenth centuries due to increased rates of sediment delivery following deforestation associated with European settlement. Numerical modeling coupled with the stratigraphic observations suggests that existing marshland could survive, but not …

A Loess–Paleosol Record Of Climate And Glacial History Over The Past Two Glacial–Interglacial Cycles (~150 Ka), Southern Jackson Hole, Wyoming, Kenneth L. Pierce, Daniel R. Muhs, Maynard A. Fosberg, Shannon A. Mahan, Joseph G. Rosenbaum, Joseph M. Licciardi, Milan J. Pavich

United States Geological Survey: Staff Publications

Loess accumulated on a Bull Lake outwash terrace of Marine Oxygen Isotope Stage 6 (MIS 6) age in southern Jackson Hole, Wyoming. The 9 m section displays eight intervals of loess deposition (Loess 1 to Loess 8, oldest), each followed by soil development. Our age-depth model is constrained by thermoluminescence, meteoric ¹⁰Be accumulation in soils, and cosmogenic ¹⁰Be surface exposure ages. We use particle size, geochemical, mineral-magnetic, and clay mineralogical data to interpret loess sources and pedogenesis. Deposition of MIS 6 loess was followed by a tripartite soil/thin loess complex (Soils 8, 7, and 6) apparently re!ecting the …

Classroom Manipulative To Engage Students In Mathematical Modeling Of Disease Spread: 1 + 1 = Achoo!, H. Gaff, M. Lyons, G. Watson

Biological Sciences Faculty Publications

Infectious diseases ranging from the common cold to cholera affect our society physically, emotionally, ecologically, and economically. Yet despite their importance and impact, there remains a lack of effective teaching materials for epidemiology and disease ecology in K-12, undergraduate, and graduate curricula [2]. To address this deficit, we've developed a classroom lesson with three instructional goals: (1) Familiarize students on basic concepts of infectious disease ecology; (2) Introduce students to a classic compartmental model and its applications in epidemiology; (3) Demonstrate the application and importance of mathematical modeling as a tool in biology. The instructional strategy uses a game-based mathematical …

Behavior Constrains The Dispersal Of Long-Lived Spiny Lobster Larvae, Mark J. Butler Iv, Claire B. Paris, Jason S. Goldstein, Hirokazu Matsuda, Robert K. Cowen

Biological Sciences Faculty Publications

Behavior such as ontogenetic vertical migration (OVM) limits the transport of marine larvae with short pelagic larval durations (PLDs), but its effect on the supposed long-distance dispersal of larvae with long PLDs is unknown. We conducted laboratory tests of ontogenetic change in larval phototaxis and examined size-specific patterns of larval distribution in the plankton to characterize OVM in the Caribbean spiny lobster Panulirus argus during its long (6 mo) PLD. We then used a coupled biophysical model to explore the consequences of OVM and hydrodynamics on larval P. argus dispersal in the Caribbean Sea. Larvae reared in the laboratory were …

A Third-Order Non-Oscillatory Finite-Volume Transport Scheme For Atmospheric Modeling, Kiran Kumar Katta

Open Access Theses & Dissertations

Atmospheric numerical modeling has been going through drastic changes over the past decade, mainly to utilize the massive computing capability of the petascale systems. This obliges the modelers to develop grid systems and numerical algorithms that facilitate exceptional level of scalability on these systems. The numerical algorithms that can address these challenges should have the local properties such as the high on-processor operation count and minimum parallel communication i.e. high parallel efficiency, it should also satisfy the following properties such as inherent local and global conservation, high-order accuracy, geometric flexibility, non-oscillatory advection, positivity preservation.

In the present work, A Third-order …

Influence Of Orography On The Weather Patterns And Water Availability Of A Topographically Complex Chihuahuan Desert Region, Fernanda De La Cerda Camargo

Open Access Theses & Dissertations

Arid and semi-arid ecosystems cover a large extent of the planet's land surface and are highly susceptible to/and dependent on resource availability patterns, especially precipitation. Topography affects large scale weather patterns and redistributes precipitation which creates a variety of microclimates in complex landscapes; how these patterns are modified, however, is still not fully understood. Climate change models for arid and semi-arid ecosystems predict a change towards more extreme precipitation events; understanding the mechanisms involved in redistributing precipitation is crucial for the protection of these areas. Indio Mountains Research Station (IMRS) is located in the northern Chihuahuan Desert and seems to …

Aerosol Characterizaton In El Paso-Juarez Airshed Using Optical Methods, Angel E. Esparza

Open Access Theses & Dissertations

The assessment and characterization of atmospheric aerosols and their optical properties are of great significance for several applications such as air pollution studies, atmospheric visibility, remote sensing of the atmosphere, and impacts on climate change. Decades ago, the interest in atmospheric aerosols was primarily for visibility impairment problems; however, recently interest has intensified with efforts to quantify the optical properties of aerosols, especially because of the uncertainties surrounding the role of aerosols in climate change. The main objective of the optical characterization of aerosols is to understand their properties. These properties are determined by the aerosols' chemical composition, size, shape …

Observed Change In Sahel Rainfall, Circulations, African Easterly Waves, And Atlantic Hurricanes Since 1979, Shih-Yu (Simon) Wang, Robert R. Gillies

Plants, Soils, and Climate Faculty Publications

Here, we examine the dynamic properties associated with the recent increase in the Sahel rainfall using an ensemble of five global reanalysis datasets (1979–2010). The rainfall that has been observed to be increasing over the Sahel is accounted for by enhancements in both the tropical easterly jet and the African easterly jet, both of which are known to induce wet anomalies. Moreover, positional shifts in the African easterly jet and African easterly waves (AEWs) accompanied the northward migration of the Sahel rainband. Change in the African easterly jet and AEWs are coupled to a northward shift and amplification of convective …

U.S. Law Of The Sea Cruise To Complete The Mapping Of Necker Ridge, Central Pacific Ocean, James V. Gardner, Brian R. Calder

Center for Coastal and Ocean Mapping

U.S. Law of the Sea Cruise to Complete the Mapping of Necker Ridge, Central Pacific Ocean

CRUISE KM1121

July 31, to August 10, 2011

Honolulu, HI to Honolulu, HI