Oceanography and Atmospheric Sciences and Meteorology Commons^™

Developing A Geospatial Protocol For Coral Epizootiology, Jennifer Anne Lentz

LSU Doctoral Dissertations

This dissertation explores how geographic information systems (GIS) and spatial statistics, specifically the techniques used to map, detect, and spatially analyze disease epidemics, could be used to advance our understanding of coral reef health. Given that different types of spatial analysis, as well as different parameter settings within each analysis, can produce noticeably different results, poor selection or improper use of a given technique would likely lead to inaccurate representations of the spatial distribution and false interpretations of the disease. For this reason, I performed a comprehensive review of the following types of exploratory spatial data analysis (ESDA): mapping and …

Function And Diversity Of The Ship, Trinity, And Tiger Shoal Complex, With Emphasis On Macrofauna And Spawning Blue Crabs (Callinectes Sapidus), Carey George Gelpi Jr.

LSU Doctoral Dissertations

The ecological and economic value of sandy shoals off the Louisiana coast is not well understood. During three years of comprehensive benthic sampling and environmental measurements I studied the Ship, Trinity, Tiger Shoal Complex (STTSC), which comprises changing and discrete benthic habitats including high relief sandy shoals, and muddier, mostly deeper off-shoal areas, prone to hypoxia. Benthic macrofaunal assemblages of shoals included endemic species, and shoal communities were significantly different from each other and the muddier offshoal habitat, contributing to northern Gulf of Mexico (GoM) regional biodiversity. Sand percentage was the most influential environmental parameter shaping macrofaunal community composition across …

Synergistic Use Of Remote Sensing And Modeling For Tracing Dust Storms In The Mediterranean, D. G. Kaskaoutis, Anup K. Prasad, P. G. Kosmopoulos, P. R. Sinha, S. K. Kharol, P. Gupta, Hesham El-Askary, Menas Kafatos

Mathematics, Physics, and Computer Science Faculty Articles and Research

This study focuses on the detection of the dust source region and monitoring of the transport of the dust plume from its primary outflow to final deposition. The application area is the Sahara desert and the eastern Mediterranean, where two dust events occurred during the period 4–6 February 2009, an unusual event for a winter period. The Aqua-MODIS and OMI observations clearly define the spatial distribution of the dust plumes, while the CALIPSO observations of total attenuated backscatter (TAB) at 532 nm, depolarization ratio (DR), and attenuated color ratio (1064/532 nm) on 5 February 2009 provide a clear view and …

Fog- And Cloud-Induced Aerosol Modification Observed By The Aerosol Robotic Network (Aeronet), T. F. Eck, B. N. Holben, J. S. Reid, D. M. Giles, M. A. Rivas, Ramesh P. Singh, S. N. Tripathi, C. J. Bruegge, S. Platnick, G. T. Arnold, N. A. Krotkov, S. A. Carn, A. Sinyuk, O. Dubovik, A. Arola, J. S. Schafer, P. Artaxo, A. Smirnov, H. Chen, P. Goloub

Mathematics, Physics, and Computer Science Faculty Articles and Research

Large fine mode-dominated aerosols (submicron radius) in size distributions retrieved from the Aerosol Robotic Network (AERONET) have been observed after fog or low-altitude cloud dissipation events. These column-integrated size distributions have been obtained at several sites in many regions of the world, typically after evaporation of low-altitude cloud such as stratocumulus or fog. Retrievals with cloud-processed aerosol are sometimes bimodal in the accumulation mode with the larger-size mode often similar to 0.4-0.5 mu m radius (volume distribution); the smaller mode, typically similar to 0.12 to similar to 0.20 mu m, may be interstitial aerosol that were not modified by incorporation …

Global Air Temperature Variability Independent Of Sea-Surface Temperature Influences, Andrew C. Comrie, Gregory J. Mccabe

United States Geological Survey: Staff Publications

Mean global surface air temperature (SAT) and sea surface temperature (SST) display substantial variability on timescales ranging from annual to multi-decadal. We review the key recent literature on connections between global SAT and SST variability. Although individual ocean influences on SAT have been recognized, the combined contributions of worldwide SST variability on the global SAT signal have not been clearly identified in observed data.Weanalyze these relations using principal components of detrended SST, and find that removing the underlying combined annual, decadal, and multi-decadal SST variability from the SAT time series reveals a nearly monotonic global warming trend in SAT since …

Gonadal Abnormalities In Frogs (Lithobates Spp.) Collected From Managed Wetlands In An Agricultural Region Of Nebraska, Usa, Diana M. Papoulias, Matt S. Schwarz, Lourdes Mena

United States Geological Survey: Staff Publications

Nebraska’s Rainwater Basin (RWB) provides important wetland habitat for North American migratory birds. Concern exists that pesticide and nutrient runoff from surrounding row-crops enters wetlands degrading water quality and adversely affecting birds and wildlife. Frogs may be especially vulnerable. Plains leopard (Lithobates blairi) metamorphs from RWB wetlands with varying concentrations of pesticides were evaluated for a suite of biomarkers of exposure to endocrine active chemicals. Froglets had ovarian dysgenesis, high rates of testicular oocytes, and female-biased sex ratios however, there was no clear statistical association between pesticide concentrations and biomarkers. Data interpretation was hindered because timing and duration …

Strontium Isotope Systematics Of Mixing Groundwater And Oil-Field Brine At Goose Lake In Northeastern Montana, Usa, Zell E. Peterman, Joanna N. Thamke, Kiyoto Futa, Todd M. Preston

United States Geological Survey: Staff Publications

Groundwater, surface water, and soil in the Goose Lake oil field in northeastern Montana have been affected by Cl^- rich oil-field brines during long-term petroleum production. Ongoing multidisciplinary geochemical and geophysical studies have identified the degree and local extent of interaction between brine and groundwater. Fourteen samples representing groundwater, surface water, and brine were collected for Sr isotope analyses to evaluate the usefulness of ⁸⁷Sr/⁸⁶Sr in detecting small amounts of brine. Differences in Sr concentrations and ⁸⁷Sr/⁸⁶Sr are optimal at this site for the experiment. Strontium concentrations range from 0.13 to 36.9 mg/L, …

Wildlife Toxicology: Environmental Contaminants And Their National And International Regulation, K. Christiana Grim, Anne Fairbrother, Barnett A. Rattner

United States Geological Survey: Staff Publications

Wildlife toxicology is the study of potentially harmful effects of toxic agents in wild animals, focusing on amphibians, reptiles, birds, and mammals. Fish and aquatic invertebrates are not usually included as part of wildlife toxicology since they fall within the field of aquatic toxicology, but collectively both disciplines often provide inSight into one another and both are integral parts of ecotoxicology (Hoffman et al. 2003). It entails monitoring, hypothesis testing, forensics, and risk assessment; encompasses molecular through ecosystem responses and various research venues (laboratory, mesocosm, field); and has been shaped by chemical use and misuse, ecological mishaps, and biomedical research. …

Mapping Recent Decadal Climate Variations In Precipitation And Temperature Across Eastern Africa And The Sahel, Christopher Funk, Joel Michaelsen, Michael T. Marshall

United States Geological Survey: Staff Publications

This chapter presents a novel interpolation approach that combines long-term mean satellite observations, station data, and topographic fields to produce grids of climate normals and trends. The approach was developed by the Climate Hazard Group (CHG) at the University of California, Santa Barbara (UCSB), to support food security analyses for the U.S. Agency for International Development’s (USAID) Famine Early Warning Systems Network (FEWS NET). The resulting FEWS NET Climatology (FCLIM) combines moving window regressions (MWRs) with geostatistical interpolation (kriging). Satellite and topographic fields often exhibit strong local correlations with in situ measurements of air temperature and rainfall. The FCLIM method …

Development And Application Of Methods Used To Source Prehistoric Southwestern Maize: A Review, Larry Benson

United States Geological Survey: Staff Publications

Archaeological cobs free of mineral contaminants should be used to source the soils in which they were grown. Mineral contaminants often contain much higher concentrations of metals than vegetal materials and can alter a cob’s apparent metal and heavy-isotope content. Cleaning a cob via immersion in an acid solution for more than a few minutes will result in the incongruent and sometimes complete leaching of metals, including strontium (Sr), from the cob. When using ⁸⁷Sr/⁸⁶Sr to determine the location of potential agriculture fields, it is best to either integrate several depth-integrated soil samples or to integrate several …

Spatially Explicit Models For Inference About Density In Unmarked Or Partially Marked Populations, Richard B. Chandler, J. Andrew Royle

United States Geological Survey: Staff Publications

Recently developed spatial capture-recapture (SCR) models represent a major advance over traditional capture-recapture (CR) models because they yield explicit estimates of animal density instead of population size within an unknown area. Futhermore, unlike nonspatial CR methods, SCR models account for heterogeneity in capture probability arising from the juxtaposition of animal activity centers and sample locations. Although the utility of SCR methods is gaining recognition, the requirement that all individuals can be uniquely identified exludes their use in many contexts. In this paper, we develop models for situations in which individual recognition is not possible, thereby allowing SCR concepts to be …

On Thinning Of Chains In Mcmc, William A. Link, Mitchell J. Eaton

United States Geological Survey: Staff Publications

1. Markov chain Monte Carlo (MCMC) is a simulation technique that has revolutionised the analysis of ecological data, allowing the fitting of complex models in a Bayesian framework. Since 2001, there have been nearly 200 papers using MCMC in publications of the Ecological Society of America and the British Ecological Society, including more than 75 in the journal Ecology and 35 in the Journal of Applied Ecology.

2. We have noted that many authors routinely ‘thin’ their simulations, discarding all but every kth sampled value; of the studies we surveyed with details on MCMC implementation, 40% reported thinning.

3. Thinning …

Gene Transcription In Sea Otters (Enhydra Lutris); Development Of A Diagnostic Tool For Sea Otter And Ecosystem Health, Lizabeth Bowen, A. Keith Miles, Michael Murray, Martin Haulena, Judy Tuttle, William Van Bonn, Lance Adams, James L. Bodkin, Brenda Ballachey, James A. Estes, M. Tim Tinker, Robin Keister, Jeffrey L. Stott

United States Geological Survey: Staff Publications

Gene transcription analysis for diagnosing or monitoring wildlife health requires the ability to distinguish pathophysiological change from natural variation. Herein, we describe methodology for the development of quantitative real-time polymerase chain reaction (qPCR) assays to measure differential transcript levels of multiple immune function genes in the sea otter (Enhydra lutris); sea otter-specific qPCR primer sequences for the genes of interest are defined. We establish a ‘reference’ range of transcripts for each gene in a group of clinically healthy captive and free-ranging sea otters. The 10 genes of interest represent multiple physiological systems that play a role in immuno-modulation, …

Catastrophe And The Life Span Of Coral Reefs, Richard B. Aronson, William F. Precht, Ian G. Macintyre, Lauren T. Toth

Ocean Engineering and Marine Sciences Faculty Publications

A strong earthquake in the western Caribbean in 2009 had a catastrophic impact on uncemented, unconsolidated coral reefs in the central sector of the shelf lagoon of the Belizean barrier reef. In a set of 21 reef sites that had been observed prior to the earthquake, the benthic assemblages of 10 were eradicated, and one was partially damaged, by avalanching of their slopes. Ecological dynamics that had played out over the previous 23 years, including the mass mortalities of two sequentially dominant coral species and a large increase in the cover of an encrusting sponge, were instantaneously rendered moot in …

Power Estimates Associated With Internal Tides From The Monterey Bay Area, Steven M. Jachec

Ocean Engineering and Marine Sciences Faculty Publications

Numerical modeling has proven to be a useful method for simulating internal tides within the coastal ocean. Monterey Bay is a location that experiences energetic semidiurnal internal tides, and they are pronounced within Monterey Submarine Canyon. Numerical simulations and field measurements indicate that the baroclinic energy fluxes there are spatially variable, leading to locations of positive and negative baroclinic energy flux divergences. Results derived from a SUNTANS (Stanford Unstructured Nonhydrostatic Terrain-following Adaptive Navier-Stokes Simulator) model simulation show that Monterey Submarine Canyon’s baroclinic power is net dissipative (–8.3 MW). However, sources and sinks exist throughout the canyon, and they permeate the …

Influence Of Anomalous Dry Conditions On Aerosols Over India: Transport, Distribution And Properties, Dimitris G. Kaskaoutis, Ritesh Gautam, Ramesh P. Singh, E. E. Housos, D. Goto, S. Singh, A. Bartzokas, P. G. Kosmopoulos, Manish Sharma, N. C. Hsu, B. N. Holben, T. Takemura

Mathematics, Physics, and Computer Science Faculty Articles and Research

A synergy of satellite and ground-based radiometric observations, along with chemical transport modeling, was used for the assessment of the influence of drought monsoon conditions of 2002 and prolonged dry pre-monsoon period of 2003 on aerosol properties over south Asia, with emphasis over northern India. Reanalysis data are also examined for studying the dry anomalous period from the climatological mean, that show prevalence of westerlies under anticyclonic circulation and subsidence favoring the accumulation of aerosols. TRMM observations over south Asia indicate significant rainfall deficit over northwestern India in July 2002 and May-June 2003. Subsequently, the anomalous and prolonged dry conditions …

Lsuhsc Facilities Biweekly Updates: January 2012, Lsuhsc Property And Facilities Management

LSUHSC Facilities Biweekly Updates: 2012

LSUHSC Facilities Biweekly Update from January 13, 2012.

This update describes damage and a timeline of repairs at the LSU Health Sciences Center - New Orleans campus due to Hurricane Katrina which made landfall August 29, 2005.

Lsuhsc Facilities Daily Update: January 2012, Lsuhsc Property And Facilities Management

LSUHSC Facilities Daily Updates: 2012

LSUHSC Facilities Daily Updates from January 2012.

These updates describe damage and a timeline of repairs at the LSU Health Sciences Center - New Orleans campus due to Hurricane Katrina which made landfall August 29, 2005.

A New Phase Speciation Leaching Procedure For The Determination Of Metals In Oxic And Anoxic Sediments, Brandon R. Gipson

OES Theses and Dissertations

Toxic trace elements such as cadmium, lead, chromium, and arsenic released by human activities can accumulate in marine and estuarine sediments, where these metals are often sequestered until local environmental changes (e.g., redox, salinity, and/or pH) allow these elements to be reintroduced into the food web. In order to assess the extent of toxic trace element contamination in sediment, numerous leaching schemes have been developed that separate sediment-bound trace metals into operationally defined geochemical phases. These "phase speciation" leaching schemes are typically designed with the purpose of being used on either oxic or anoxic sediments. However, natural sediments often contain …

Limnological Assistance For Lake Mead National Recreation Area: Quarterly Report, Period Ending December 31, 2011, Margaret N. Rees

Limnological Studies

Project 1

• Technical assistance with the implementation of the Interagency Monitoring Action Plan (IMAP) for Quagga Mussels is ongoing; remaining analyses are underway with report delivery rescheduled for 05/2012.
• Data have been delivered for Veliger abundance and settlement at different depths of Lake Mead with report delivery re-scheduled for 05/2012.
• Growth of adult quagga mussels within Las Vegas Wash/Las Vegas Bay
• The Interagency Quagga Mussel Meeting was held on 11/17/2011; the next meeting is scheduled for 02/16/2011.

Project 2

• Appendix 7, an addition to the Long-term Limnological and Aquatic Resource Monitoring and Research Plan for Lakes Mead and Mohave, has …