Applied Mathematics Commons^™

Fuzzy Logistic Regression For Detecting Differential Dna Methylation Regions, Tarek M. Bubaker Bennaser

Doctoral Dissertations

“Epigenetics is the study of changes in gene activity or function that are not related to a change in the DNA sequence. DNA methylation is one of the main types of epigenetic modifications, that occur when a methyl chemical group attaches to a cytosine on the DNA sequence. Although the sequence does not change, the addition of a methyl group can change the way genes are expressed and produce different phenotypes. DNA methylation is involved in many biological processes and has important implications in the fields of biomedicine and agriculture.

Statistical methods have been developed to compare DNA methylation at …

Novel Approaches For Constructing Persistent Delaunay Triangulations By Applying Different Equations And Different Methods, Esraa Habeeb Khaleel Al-Juhaishi

Doctoral Dissertations

“Delaunay triangulation and data structures are an essential field of study and research in computer science, for this reason, the correct choices, and an adequate design are essential for the development of algorithms for the efficient storage and/or retrieval of information. However, most structures are usually ephemeral, which means keeping all versions, in different copies, of the same data structure is expensive. The problem arises of developing data structures that are capable of maintaining different versions of themselves, minimizing the cost of memory, and keeping the performance of operations as close as possible to the original structure. Therefore, this research …

Pattern Selection Models: From Normal To Anomalous Diffusion, Hatim K. Khudhair

Doctoral Dissertations

“Pattern formation and selection is an important topic in many physical, chemical, and biological fields. In 1952, Alan Turing showed that a system of chemical substances could produce spatially stable patterns by the interplay of diffusion and reactions. Since then, pattern formations have been widely studied via the reaction-diffusion models. So far, patterns in the single-component system with normal diffusion have been well understood. Motivated by the experimental observations, more recent attention has been focused on the reaction-diffusion systems with anomalous diffusion as well as coupled multi-component systems. The objectives of this dissertation are to study the effects of superdiffusion …

Analysis On Sharp And Smooth Interface, Elizabeth V. Hawkins

College of Graduate Studies: Theses & Dissertations

In biology, minimizing a free energy functional gives an equilibrium shape that is the most stable in nature. The formulation of these functionals can vary in many ways, in particular they can have either a smooth or sharp interface. Minimizing a functional can be done through variational calculus or can be proved to exist using various analysis techniques. The functionals investigated here have a smooth and sharp interface and are analyzed using analysis and variational calculus respectively. From the former we find the condition for extremum and its second variation. The second variation is commonly used to analyze stability of …

An Algorithm Based On Vanet Technology To Count Vehicles Stopped At A Traffic Light, Manuel Contreras, Eric Gamess

Research, Publications & Creative Work

Vehicular Ad hoc Networks (VANETs) have gained considerable attention in the past few years due to their promising applicability in relation to the Intelligent Transportation Systems (ITSs). This emerging new technology will provide timely information to develop adaptive traffic light control systems that will allow a significant optimization of the vehicular traffic flow. In this paper, we introduce a novel algorithm for counting vehicles stopped at a traffic light using VANET technology. The algorithm is based on the idea of the propagation of a count request message from the RSU (originating unit) toward the vehicles that are at the end …

Modeling Community Resource Management: An Agent-Based Approach, Maya M. Lapp

Senior Independent Study Theses

As the human population continues increasing rapidly and climate change accelerates, resource depletion is becoming an international problem. Community-based natural resource management (CBNRM) has been suggested as a method to conserve resources while simultaneously empowering traditionally marginalized communities. Because classical equation-based modeling methods fail to capture the complexity of CBNRM, Agent-Based Modeling (ABM) has emerged as a primary method of modeling these systems. In this investigation, we conduct a sensitivity analysis and thorough evaluation of an existing ABM of community forest management. We then modify the original model by providing a new enforcement mechanism that improves the validity of both …

Effects Of Aperiodicity And Frustration On The Magnetic Properties Of Artificial Quasicrystals, Barry Farmer

Theses and Dissertations--Physics and Astronomy

Quasicrystals have been shown to exhibit physical properties that are dramatically different from their periodic counterparts. A limited number of magnetic quasicrystals have been fabricated and measured, and they do not exhibit long-range magnetic order, which is in direct conflict with simulations that indicate such a state should be accessible. This dissertation adopts a metamaterials approach in which artificial quasicrystals are fabricated and studied with the specific goal of identifying how aperiodicity affects magnetic long-range order. Electron beam lithography techniques were used to pattern magnetic thin films into two types of aperiodic tilings, the Penrose P2, and Ammann-Beenker tilings. SQUID …

Modeling The Evolution Of Barrier Islands, Greg Robson

Theses and Dissertations

Barrier islands form off the shore of many coastal areas and serve as the first line of defense, protecting littoral communities against storms. To study the effects that climate change has on barrier islands, we use a cellular model of wind erosion, surface dynamics, beach dynamics, marsh dynamics, and vegetation development. We will show the inhibition of movement when vegetation is present.

Estimating Response Status In Sequential Multiple Assignment (Smar)-Like Trials, Keighly Bradbrook

Theses and Dissertations

Sequential, multiple assignment, randomized trials (SMARTs) allow investigators to develop and compare experimental treatment regimens in which individuals are successively randomized to different treatments based on some set of predetermined rules. The rules used to make decisions on when and how to switch treatments are based on a chosen set of tailoring variables. Although not always true, intermediate response is commonly used as the primary tailoring variable as it is often predictive of future treatment success. As such, successful implementation depends on identifying patients who respond to treatment, though in some situations such mechanisms may not exist. Further, patient-level covariates …

The Analysis Of Neural Heterogeneity Through Mathematical And Statistical Methods, Kyle Wendling

Theses and Dissertations

Diversity of intrinsic neural attributes and network connections is known to exist in many areas of the brain and is thought to significantly affect neural coding. Recent theoretical and experimental work has argued that in uncoupled networks, coding is most accurate at intermediate levels of heterogeneity. I explore this phenomenon through two distinct approaches: a theoretical mathematical modeling approach and a data-driven statistical modeling approach.

Through the mathematical approach, I examine firing rate heterogeneity in a feedforward network of stochastic neural oscillators utilizing a high-dimensional model. The firing rate heterogeneity stems from two sources: intrinsic (different individual cells) and network …

Adverse Effects Of A Hybrid Nanofluid In A Wavy Non-Uniform Annulus With Convective Boundary Conditions, H. Sadaf, Sara I. Abdelsalam

Basic Science Engineering

The presented investigation theoretically studies the physical characteristics of a two-dimensional incompressible hybrid nanofluid in a non-uniform annulus where the boundaries are flexible. A mixed convective peristaltic mechanism is implemented to model blood-based nanofluids using two different nanoparticles (Ag + Al2O3). Convective boundary conditions are employed and different forms of nanoparticles are discussed (bricks, cylinders and platelets). The problem is shortened by engaging a lubrication method. Exact expressions for the temperature of cumulative heat source/sink standards, hemodynamic velocity, pressure gradient and streamlines of different shapes of nanoparticles are obtained. Special cases of pure blood and the Al2O3 nanofluid of our …

Asset Pricing Under Randomized Solvable Diffusions, Hiromichi Kato

Theses and Dissertations (Comprehensive)

By employing a randomization procedure on the geometric Brownian motion (GBM) model, we construct our new pricing models with stochastic volatility exhibiting symmetric smiles in the log-forward moneyness, and admitting simple closed-form analytical expressions for European-style option prices. We assume that there are no infinitesimal correlations between the underlying asset prices and their volatility, and the integrated squared volatility processes are random variables with well-known probability density functions. Under some regularity conditions, closed-form expressions are obtained by taking the expectation of option prices under diffusion models over the integrated squared volatility process, which relate to the Bayesian framework in the …

Missing Data Imputation Of High-Resolution Temporal Climate Time Series Data, Eben Afrifa-Yamoah, Ute A. Mueller, S. M. Taylor, A. J. Fisher

Research outputs 2014 to 2021

© 2020 The Authors. Meteorological Applications published by John Wiley & Sons Ltd on behalf of the Royal Meteorological Society. Analysis of high-resolution data offers greater opportunity to understand the nature of data variability, behaviours, trends and to detect small changes. Climate studies often require complete time series data which, in the presence of missing data, means imputation must be undertaken. Research on the imputation of high-resolution temporal climate time series data is still at an early phase. In this study, multiple approaches to the imputation of missing values were evaluated, including a structural time series model with Kalman smoothing, …

Hybrid Electric Vehicle Energy Management Strategy With Consideration Of Battery Aging, Bin Zhou

Dissertations, Master's Theses and Master's Reports

The equivalent consumption minimization strategy (ECMS) is a well-known energy management strategy for Hybrid Electric Vehicles (HEV). ECMS is very computationally efficient since it yields an instantaneous optimal control. ECMS has been shown to minimize fuel consumption under certain conditions. But, minimizing the fuel consumption often leads to excessive battery damage. The objective of this dissertation is to develop a real-time implementable optimal energy management strategy which improves both the fuel economy and battery aging for Hybrid Electric Vehicles by using ECMS. This work introduces a new optimal control problem where the cost function includes terms for both fuel consumption …

The Singular Value Expansion For Compact And Non-Compact Operators, Daniel Crane

Dissertations, Master's Theses and Master's Reports

Given any bounded linear operator T : X → Y between separable Hilbert spaces X and Y , there exists a measure space (M, Α, µ) and isometries V : L²(M) → X, U : L²(M) → Y and a nonnegative, bounded, measurable function σ : M → [0, ∞) such that

T = Um_σV ^†,

with m_σ : L²(M ) → L²(M ) defined by m_σ(f ) = σf for all f …

Sub-Sampled Matrix Approximations, Joy Azzam

Dissertations, Master's Theses and Master's Reports

Matrix approximations are widely used to accelerate many numerical algorithms. Current methods sample row (or column) spaces to reduce their computational footprint and approximate a matrix A with an appropriate embedding of the data sampled. This work introduces a novel family of randomized iterative algorithms which use significantly less data per iteration than current methods by sampling input and output spaces simultaneously. The data footprint of the algorithms can be tuned (independent of the underlying matrix dimension) to available hardware. Proof is given for the convergence of the algorithms, which are referred to as sub-sampled, in terms of numerically tested …

On The Intermediate Long Wave Propagation For Internal Waves In The Presence Of Currents, Joseph Cullen, Rossen Ivanov

Articles

A model for the wave motion of an internal wave in the presence of current in the case of intermediate long wave approximation is studied. The lower layer is considerably deeper, with a higher density than the upper layer. The flat surface approximation is assumed. The fluids are incompressible and inviscid. The model equations are obtained from the Hamiltonian formulation of the dynamics in the presence of a depth-varying current. It is shown that an appropriate scaling leads to the integrable Intermediate Long Wave Equation (ILWE). Two limits of the ILWE leading to the integrable Benjamin-Ono and KdV equations are …

Camassa-Holm Cuspons, Solitons And Their Interactions Via The Dressing Method, Rossen Ivanov, Tony Lyons, Nigel Orr

Articles

A dressing method is applied to a matrix Lax pair for the Camassa–Holm equation, thereby allowing for the construction of several global solutions of the system. In particular, solutions of system of soliton and cuspon type are constructed explicitly. The interactions between soliton and cuspon solutions of the system are investigated. The geometric aspects of the Camassa–Holm equation are re-examined in terms of quantities which can be explicitly constructed via the inverse scattering method.

A Mass Conserving Mixed Stress Formulation For Stokes Flow With Weakly Imposed Stress Symmetry, Jay Gopalakrishnan, Philip L. Lederer, Joachim Schoeberl

Mathematics and Statistics Faculty Publications and Presentations

We introduce a new discretization of a mixed formulation of the incompressible Stokes equations that includes symmetric viscous stresses. The method is built upon a mass conserving mixed formulation that we recently studied. The improvement in this work is a new method that directly approximates the viscous fluid stress $\sigma$, enforcing its symmetry weakly. The finite element space in which the stress is approximated consists of matrix-valued functions having continuous “normal-tangential” components across element interfaces. Stability is achieved by adding certain matrix bubbles that were introduced earlier in the literature on finite elements for linear elasticity. Like the earlier work, …

A Primer On Laplacian Dynamics In Directed Graphs, J. J. P. Veerman, R. Lyons

Mathematics and Statistics Faculty Publications and Presentations

We analyze the asymptotic behavior of general first order Laplacian processes on digraphs. The most important ones of these are diffusion and consensus with both continuous and discrete time. We treat diffusion and consensus as dual processes. This is the first complete exposition of this material in a single work.