Numerical Analysis and Computation Commons^™

Evolution Of Influenza H3n2: A Random Walk In High Dimensions, James R. Moore

Biology and Medicine Through Mathematics Conference

No abstract provided.

Building And Validating A Model For Investigating The Dynamics Of Isolated Water Molecules, Grant Cates

Senior Theses

Understanding how water molecules behave in isolation is vital to understand many fundamental processes in nature. To that end, scientists have begun studying crystals in which single water molecules become trapped in regularly occurring cavities in the crystal structure. As part of that investigation, numerical models used to investigate the dynamics of isolated water molecules are sought to help bolster our fundamental understanding of how these systems behave. To that end, the efficacy of three computational methods—the Euler Method, the Euler-Aspel Method and the Beeman Method—is compared using a newly defined parameter, called the predictive stability coefficient ρ. This …

Application Of Symplectic Integration On A Dynamical System, William Frazier

Electronic Theses and Dissertations

Molecular Dynamics (MD) is the numerical simulation of a large system of interacting molecules, and one of the key components of a MD simulation is the numerical estimation of the solutions to a system of nonlinear differential equations. Such systems are very sensitive to discretization and round-off error, and correspondingly, standard techniques such as Runge-Kutta methods can lead to poor results. However, MD systems are conservative, which means that we can use Hamiltonian mechanics and symplectic transformations (also known as canonical transformations) in analyzing and approximating solutions. This is standard in MD applications, leading to numerical techniques known as symplectic …

Electrodynamical Modeling For Light Transport Simulation, Michael G. Saunders

Undergraduate Honors Theses

Modernity in the computer graphics community is characterized by a burgeoning interest in physically based rendering techniques. That is to say that mathematical reasoning from first principles is widely preferred to ad hoc, approximate reasoning in blind pursuit of photorealism. Thereby, the purpose of our research is to investigate the efficacy of explicit electrodynamical modeling by means of the generalized Jones vector given by Azzam [1] and the generalized Jones matrix given by Ortega-Quijano & Arce-Diego [2] in the context of stochastic light transport simulation for computer graphics. To augment the status quo path tracing framework with such a modeling …

Efficient Denoising And Sharpening Of Color Images Through Numerical Solution Of Nonlinear Diffusion Equations, Linh T. Duong

Honors Theses

The purpose of this project is to enhance color images through denoising and sharpening, two important branches of image processing, by mathematically modeling the images. Modifications are made to two existing nonlinear diffusion image processing models to adapt them to color images. This is done by treating the red, green, and blue (RGB) channels of color images independently, contrary to the conventional idea that the channels should not be treated independently. A new numerical method is needed to solve our models for high resolution images since current methods are impractical. To produce an efficient method, the solution is represented as …

Time Lags Associated With Effects Of Oceanic Conditions On Seabird Breeding In The Salish Sea Region Of The Northern California Current System, Rashida S. Smith, Lynelle M. Weldon, James L. Hayward, Shandelle M. Henson

Faculty Publications

No abstract provided.

Shear Driven Micro-Fluidic Pump For Cardiovascular Applications, Nihad E. Daidzic

Aviation Department Publications

A valveless shear-driven micro-fluidic pump design (SDMFP) for hemodynamic applications is presented in this work. One of the possible medical and biomedical applications is in-vivo hemodynamic (human blood circulation) support/assist. One or more SDMFPs can be inserted/implanted into vascular lumens in a form of a stent/duct in series and/or in parallel (bypass duct) to support blood circulation in-vivo. A comprehensive review of various micro-pump designs up to about mid 2000’s is given in [1,2]. Many of micropump designs considered are not suitable for in-vivo or even in-vitro medical/biomedical applications.

Operating principles, design, and SDMFP features are given in [3]. A …

A Coupled Localized Rbf Meshless/Drbem Formulation For Accurate Modeling Of Incompressible Fluid Flows, Leonardo Bueno, Eduardo Divo, Alain J. Kassab

Publications

Velocity-pressure coupling schemes for the solution of incompressible fluid flow problems in Computational Fluid Dynamics (CFD) rely on the formulation of Poisson-like equations through projection methods. The solution of these Poisson-like equations represent the pressure correction and the velocity correction to ensure proper satisfaction of the conservation of mass equation at each step of a time-marching scheme or at each level of an iteration process. Inaccurate solutions of these Poisson-like equations result in meaningless instantaneous or intermediate approximations that do not represent the proper time-accurate behavior of the flow. The fact that these equations must be solved to convergence at …

An Rbf Interpolation Blending Scheme For Effective Shock-Capturing, M. Harris, Eduardo Divo, Alain J. Kassab

Publications

In recent years significant focus has been given to the study of Radial basis functions (RBF), especially in their use on solving partial differential equations (PDE). RBF have an impressive capability of inter- polating scattered data, even when this data presents localized discontinuities. However, for infinitely smooth RBF such as the Multiquadrics, inverse Multiquadrics, and Gaussian, the shape parameter must be chosen properly to obtain accurate approximations while avoiding ill-conditioning of the interpolating matrices. The optimum shape parameter can vary significantly depending on the field, particularly in locations of steep gradients, shocks, or discontinuities. Typically, the shape parameter is chosen …

Haar Wavelet Solution Of Poisson’S Equation And Their Block Structures, The British University In Egypt, Ain Shams University

Basic Science Engineering

The structure of the algebraic system which results from the use of Haar wavelet when solving Poisson’s equation is studied. Haar wavelet technique is used to solve Poisson’s equation on a unit square domain. The form of collocation points are used at the mid points of the subintervals i.e at the odd multiple of the sub interval length labeling. It is proved that the coefficient matrix has symmetric block structure. Comparison with the tridagonal block structure obtained by the finite difference with the natural ordering is introduced. The numerical results have illustrated the superiority of the use of Haar wavelet …

Computational Algorithms For Improved Representation Of The Model Error Covariance In Weak-Constraint 4d-Var, Jeremy A. Shaw

Dissertations and Theses

Four-dimensional variational data assimilation (4D-Var) provides an estimate to the state of a dynamical system through the minimization of a cost functional that measures the distance to a prior state (background) estimate and observations over a time window. The analysis fit to each information input component is determined by the specification of the error covariance matrices in the data assimilation system (DAS). Weak-constraint 4D-Var (w4D-Var) provides a theoretical framework to account for modeling errors in the analysis scheme. In addition to the specification of the background error covariance matrix, the w4D-Var formulation requires information on the model error statistics and …

Application Of An Rbf Blending Interpolation Method To Problems With Shocks, Michael Harris, Eduardo Divo, Alain J. Kassab

Publications

Radial basis functions (RBF) have become an area of research in recent years, especially in the use of solving partial differential equations (PDE). Radial basis functions have an impressive capability in interpolating scattered data, even for data with discontinuities. Although, for infinitely smooth radial basis functions such as the multi-quadrics and inverse multi-quadrics, the shape parameter must be chosen properly to obtain accurate approximations while avoiding ill-conditioning of the interpolating matrices. The optimum shape parameter can vary depending on the field, such as in locations of sharp gradients or shocks. Typically, the shape parameter is chosen to maintain a high …

On The Three Dimensional Interaction Between Flexible Fibers And Fluid Flow, Bogdan Nita, Ryan Allaire

Department of Mathematics Faculty Scholarship and Creative Works

In this paper we discuss the deformation of a flexible fiber clamped to a spherical body and immersed in a flow of fluid moving with a speed ranging between 0 and 50 cm/s by means of three dimensional numerical simulation developed in COMSOL . The effects of flow speed and initial configuration angle of the fiber relative to the flow are analyzed. A rigorous analysis of the numerical procedure is performed and our code is benchmarked against well established cases. The flow velocity and pressure are used to compute drag forces upon the fiber. Of particular interest is the behavior …

Steady State Probabilities In Relation To Eigenvalues, Pellegrino Christopher

The Kabod

By using the methods of Hamdy Taha, eigenvectors can be used in solving problems to compute steady state probabilities, and they work every time.

Numerical Simulation Of Acoustic Emission During Crack Growth In 3-Point Bending Test, Mihhail Berezovski, Arkadi Berezovski

Publications

Numerical simulation of acoustic emission by crack propagation in 3-point bending tests is performed to investigate how the interaction of elastic waves generates a detectable signal. It is shown that the use of a kinetic relation for the crack tip velocity combined with a simple crack growth criterion provides the formation of waveforms similar to those observed in experiments.

Weihrauch Reducibility And Finite-Dimensional Subspaces, Sean Sovine

Theses, Dissertations and Capstones

In this thesis we study several principles involving subspaces and decompositions of vector spaces, matroids, and graphs from the perspective of Weihrauch reducibility. We study the problem of decomposing a countable vector space or countable matroid into 1-dimensional subspaces. We also study the problem of producing a finite-dimensional or 1-dimensional subspace of a countable vector space, and related problems for producing finite-dimensional subspaces of a countable matroid. This extends work in the reverse mathematics setting by Downey, Hirschfeldt, Kach, Lempp, Mileti, and Montalb´an (2007) and recent work of Hirst and Mummert (2017). Finally, we study the problem of producing a …

Kinetic Monte Carlo Methods For Computing First Capture Time Distributions In Models Of Diffusive Absorption, Daniel Schmidt

HMC Senior Theses

In this paper, we consider the capture dynamics of a particle undergoing a random walk above a sheet of absorbing traps. In particular, we seek to characterize the distribution in time from when the particle is released to when it is absorbed. This problem is motivated by the study of lymphocytes in the human blood stream; for a particle near the surface of a lymphocyte, how long will it take for the particle to be captured? We model this problem as a diffusive process with a mixture of reflecting and absorbing boundary conditions. The model is analyzed from two approaches. …

A Numerical Study Of Construction Of Honey Bee Comb, Pamela Guerrero, Pamela C. Guerrero

Murray State Theses and Dissertations

We use finite difference methods in the treatment of an existing system of partial differential equations that captures the dynamics of parallel honeycomb construction in a bee hive. We conduct an uncertainty analysis by calculating the partial rank correlation coefficient for the parameters to find which are most important to the outcomes of the model. We then use an eFAST method to determine both the individual and total sensitivity index for the parameters. Afterwards we examine our numerical model under varying initial conditions and parameter values, and compare ratios found from local data with the golden mean by fitting images …

Daily Traffic Flow Pattern Recognition By Spectral Clustering, Matthew Aven

CMC Senior Theses

This paper explores the potential applications of existing spectral clustering algorithms to real life problems through experiments on existing road traffic data. The analysis begins with an overview of previous unsupervised machine learning techniques and constructs an effective spectral clustering algorithm that demonstrates the analytical power of the method. The paper focuses on the spectral embedding method’s ability to project non-linearly separable, high dimensional data into a more manageable space that allows for accurate clustering. The key step in this method involves solving a normalized eigenvector problem in order to construct an optimal representation of the original data.

While this …

A Physics-Based Approach To Modeling Wildland Fire Spread Through Porous Fuel Beds, Tingting Tang

Theses and Dissertations--Mechanical and Aerospace Engineering

Wildfires are becoming increasingly erratic nowadays at least in part because of climate change. CFD (computational fluid dynamics)-based models with the potential of simulating extreme behaviors are gaining increasing attention as a means to predict such behavior in order to aid firefighting efforts. This dissertation describes a wildfire model based on the current understanding of wildfire physics. The model includes physics of turbulence, inhomogeneous porous fuel beds, heat release, ignition, and firebrands. A discrete dynamical system for flow in porous media is derived and incorporated into the subgrid-scale model for synthetic-velocity large-eddy simulation (LES), and a general porosity-permeability model is …