Non-linear Dynamics Commons^™

Accuracy Of Parameter Estimation For A Simple Gene Regulatory Network Model Is Sensitive To Network Motif, Number Of Parameters Estimated, And Magnitude And Direction Of Regulatory Relationships, Nikki C. Chun, Kam Dahlquist

Honors Thesis

A gene regulatory network (GRN) is a set of transcription factors that regulate the expression of genes encoding other transcription factors. The dynamics of a GRN explain how gene expression changes over time. GRNmap is a MATLAB software package that uses ordinary differential equations to model dynamics of small-scale GRNs. We used the program to estimate production rates, expression thresholds, and regulatory weights for each transcription factor in three related literature-derived GRNs based on yeast cold shock microarray data previously collected in the Dahlquist Lab. We noticed large differences in estimated weight values when 1-2% of the expression values were …

Dynamic Homeostasis In Relaxation And Bursting Oscillations, Christopher J. Ryzowicz

Biology and Medicine Through Mathematics Conference

No abstract provided.

Modeling, Control Analysis, And Parameter Estimation Of Epidemic Dynamics Using The Unscented Kalman Filter, Muhammad Imran, Saira Batool, Brett Mckinney

Biology and Medicine Through Mathematics Conference

No abstract provided.

A Two-Phase Perspective On A Related-Rates Paradox, Charlie Vazquez Acosta

Honors Capstones

Related-rates problems are a standard topic in first-year calculus and have appeared in textbooks for over 150 years. These problems are used to teach implicit differentiation and the relationship between changing quantities. Common examples include the falling ladder, the fishing bobber, the melting snowball, and the leaking conical tank. In each of these problems, a quantity is changing at a constant rate, and students are asked to find the rate of change of another related quantity. While the computations themselves are usually straightforward, the standard models lead to unrealistic results near the end of the motion. For example, the falling …

Phenological Overlap In Obligate Plant-Pollinator Mutualism, Austin J. Carlson

2026 Spring Honors Capstones Projects

Plant-pollinator mutualisms require temporal overlap between flowering and pollinator activity, so climate-driven timing shifts can weaken the interaction and, in severe cases, destabilize the system. This work investigates how reduced overlap affects persistence in an obligate plant-pollinator pair using a coupled differential equation model in which a phenological overlap factor scales the saturating mutualistic benefit. Simplification with a constant overlap enables closed-form equilibrium and stability analysis, revealing that below a critical overlap threshold, coexistence is no longer maintained. Rescaling reduces the parameter space from ten quantities to seven dimensionless groups, and sensitivity analysis identifies the degree of species dependence and …

An Exploration Of The Autorotating Pendulum Model, Vlad Nita

Theses, Dissertations and Culminating Projects

Autorotation is the spontaneous rotation of an object, usually caused by an external fluid flow. The study of autorotation has many physical applications, such as in the design of wind/water turbines. In this thesis, we explore a nonlinear pendulum ordinary differential equation (ODE) which is used to model rotating plates in a fluid and has the capacity to reveal autorotation. In the context of an ODE, autorotation emerges as a bifurcation past oscillations, when the initial velocity of the system crosses a particular threshold. In his classic study from 1983, Lugt [14] utilizes this equation to capture experimental autorotation. Copeland’s …

Safe Control Design For Quadruped Locomotion In Unstructured Environments Using Linear Transfer Operators, Sriram Sundar Krishnamoorthy Shankara Narayanan

All Dissertations

Deploying quadruped robots in unstructured, obstacle-rich environments requires control and planning methods that remain safe and reliable despite complex terrain geometry, limited sensing, and inevitable modeling errors. This thesis develops operator-theoretic tools for safe control design of robotic systems using linear transfer operators, with a focus on quadruped locomotion in unstructured environments. The central goal is to develop a unified operator-theoretic framework for safe control design based on the Perron–Frobenius (P–F) and Koopman operators. In particular, the thesis leverages \emph{density functions} to develop safe navigation frameworks in the dual space of densities. In the operator-theoretic perspective, the P–F operator governs …

Fractsynth: Exploring Glitch Timbres With Chaos Theory, Aidan Roach

The Transdisciplinary STEAM+ Journal

In this paper, I explore how chaos theory can be used to design a new kind of synthesizer with the primary focus of producing glitchy, unpredictable sounds. Glitch music embraces abstract sound design, malfunctioning electronics, and randomness as the main compositional elements. However, most synthesizers rely on stable, repetitive oscillators that often sound too controlled. To challenge this, I developed FractSynth, a real-time synthesizer that uses chaotic attractors–including the Logistic Map, Henon Map, and Lorenz System–as modulation sources for frequency, amplitude, and tone. The software also features real-time Lyapunov Exponent Tracking, which gives users a direct visual of how …

The Digital Neuron: Neural Cellular Automata For Neural–Symbolic Translation, Nicole Assenza

SMU Data Science Review

A neural cellular automata (NCA) architecture, referred to as Pluto’s NCA, was developed to characterize bilateral communication and semantic reciprocity between symbolic representations and a spatially distributed update field. The architecture employs an encoder–automata–decoder pipeline that maps symbolic inputs into a multichannel state field and reconstructs them through agreement-driven attractor convergence within a stable semantic attractor landscape. System behavior was evaluated under controlled perturbations, including rhythmic desynchronization, graded ablations, correlated and independent noise, and percolation-based structural degradation. Quantities such as Agreement(t), internal coherence Aᵢ(t), the recovery time constant τ, and the critical percolation threshold pc were measured to assess stability, …

Emergent Dynamics In Multiplex Social Networks: Agent-Based Modeling Of Information Diffusion For Misinformation Control, Harshvardhan Prabhakar Ghongade, Anjali Ashokrao Bhadre, Shivani Agarwal, Harjitkumar Uttamrao Pawar, Harshal Subhash Rane

Northeast Journal of Complex Systems (NEJCS)

Information misrepresentation is widespread in multi-layered social networks which provide multiple avenues to communicate information. As such, it presents significant opportunities for both information integrity and public discourse to be undermined by disinformation. This paper outlines a new agent-based model, developed to capture emergent dynamics of multi-layered social networks and to help identify technical means to mitigate information misrepresentation in complex systems. A key component of this research includes a novel Multi-Layer Information Diffusion Model (MLIDM), integrating both cross-layer communication among agents, as well as heterogeneous agent behaviors and adaptive intervention strategies. Our methods employ a three-stage process to model …

Modeling Flood-Induced Cascading Disruptions In The Indian Electronics Supply Chain Using Influence Network Analysis, Surendra Orupalli, Hiroki Sayama

Northeast Journal of Complex Systems (NEJCS)

This study investigates flood induced disruptions in the Indian electronics supply chain using influence network analysis. Monsoon floods are recurring hazards that significantly impact economic activities, logistics, and industrial productivity. This study integrates district-level rainfall data (2020 to 2025) with supply chain network models to quantify cascading failures. The methodology applies rainfall thresholds (≥ 300 mm/month) to identify flood-prone districts and constructs a stochastic influence matrix representing inter-firm dependencies. Flood propagation dynamics are modeled iteratively with a propagation coefficient (α = 0.6) and convergence threshold (ε = 10⁻⁴). The resulting disruption profiles are mapped onto company-level revenues calibrated to India-specific …

Modeling Bitcoin Dynamics Using Differential Equations, Boone M. Fleenor

Departmental Honors & Graduate Capstone Projects

In this thesis, we develop and analyze two nonlinear systems of ordinary differential equations to model Bitcoin price dynamics. Analytical techniques are used to obtain exact or approximate solutions where possible. Then, numerical simulations using a fourth-order Runge–Kutta method are employed to explore system behavior beyond analytically tractable regimes. Finally, model outputs are compared to historical Bitcoin price data using normalized and resampled time series. These results suggest that deterministic models can provide meaningful insight into the structural behavior of Bitcoin markets, while highlighting the need for stochastic or time-dependent extensions for more realistic modeling.

A Dynamic Systems Framework For Customer Lifecycle Management: From Latent State Discovery To Robust Control Policy, Ali Nasirzonouzi

Northeast Journal of Complex Systems (NEJCS)

Traditional marketing often relies on static strategies that fail to capture dynamic customer behavior. This paper introduces an integrated framework to model and control the customer lifecycle, bridging the gap between empirical data and computational simulation. Using the Customer Personality Analysis dataset, we implemented a five-stage methodology. We first identified three distinct customer segments (At-Risk, Standard, High-Value) using Gaussian Mixture Models. To address the lack of longitudinal data, we calibrated a normative transition model based on customer inertia principles. Our analysis revealed that marketing effectiveness is highly state-dependent; notably, At-Risk customers exhibited a 33.5% lift when targeted with catalogs. Leveraging …

Digital Transformation And Market Microstructure: Analyzing The Impact Of Algorithmic Trading On National Stock Exchange Of India Price Discovery Mechanisms Through Complex Systems Theory., Mukesh Bhaskar Ahirrao, Harshal Anil Salunkhe, Vishal Sunil Rana

Northeast Journal of Complex Systems (NEJCS)

Abstract

This research examines the evolution of market microstructure at the National Stock Exchange of India (NSE) from 2020 to 2024, a period characterized by substantial growth in algorithmic trading from 35% to 44% of total trading volume. Using market microstructure data and analytical techniques grounded in complex systems perspectives, the study documents temporal patterns in price discovery, liquidity, volatility, and market efficiency associated with this digital transformation.

The analysis reveals several notable changes in market characteristics. Transaction costs improved significantly, with bid-ask spreads declining by 23.4% and market depth increasing by 18.1%. Price adjustment half-life decreased by 50%, indicating …

Complex Systems Mapping Of Fiscal Growth Dynamics At Strategic Maritime Chokepoints Using Time-Series Slopes, Rahul Balamurugan, Preethi Nanjundan, Avichal Sharma

Northeast Journal of Complex Systems (NEJCS)

This study examines how maritime and trading states allocate public resources between defence, health, and economic growth around three strategic chokepoints the Strait of Malacca, the Strait of Hormuz, and the Suez Canal. The analysis extends the classic “guns versus butter” framing by treating defence and health spending as co-evolving components of an interconnected fiscal-growth system. Using World Development Indicators data (1999-2024), trend slopes are estimated for military spending (% of GDP), healthcare spending (% of GDP), and GDP growth (annual %). Two derived indicators are computed, a defence-to-health slope ratio (military slope/health slope) and a fiscal-balance proxy (health slope …

Arum–D Nexus: Adaptive Reflexive Urban Metabolism For Complex Construction And Demolition Waste Governance In Bengaluru, Talat Naaz, Rosewine Joy

Northeast Journal of Complex Systems (NEJCS)

Urban material systems exhibit nonlinear dynamics governed by feedback, adaptation, and emergent coupling among institutions, markets, and behaviors. Construction and demolition (C&D) waste in Bengaluru is a great example of such complexity, where fragmented regulation, informal actors, and digital asymmetries coalesce into unstable waste flows and resource leakages. This study conceptualizes Bengaluru’s C&D waste system as a Complex Adaptive System (CAS), where institutional, market, behavioral, and metabolic subsystems co-evolve through nonlinear feedback interactions. A meta-analysis of secondary literature combined with benchmarking of government datasets is used to evaluate two key complexity indicators, i.e., response speed and feedback density. The advancement …

Solving Wordle Using Information Theory, Talal Aladaileh, Donald Stephens, Mallak Alqaisi, Congyu Wu

Northeast Journal of Complex Systems (NEJCS)

Wordle, a popular word-guessing game, challenges players to identify a five-letter secret word through iterative guesses and feedback on letter placement. The players must figure out the secret word within six guesses. After each guess, the letters will be color-coded based on different criteria. Optimizing the choice of guesses is critical for maximizing success within the limited attempts allowed. In this study, the application of Shannon entropy is explored as a strategy for selecting words that maximize information gain at each step of the game. By quantifying the uncertainty reduction achieved by potential guesses, this method prioritizes words that are …

A Multi-Layer Complex Adaptive System Framework For Ai-Driven Robo-Advisory Services, Jesty Mariam Philip, Mohit Boralkar, Alwin Joseph

Northeast Journal of Complex Systems (NEJCS)

The rapid integration of Artificial Intelligence (AI) into investment advisory services has changed financial decision-making, giving rise to adaptive robo-advisory systems capable of real-time analysis, personal recommendations, and autonomous portfolio optimization. Existing research evaluates these systems primarily through technological performance or investor adoption, overlooking the complex feedback-driven interactions that emerge when AI analytics, data environments, and human behavior operate together. This study addresses this gap by conceptualizing AI-enabled robo-advisors as a multi-layered Complex Adaptive System comprising historical data, real-time data, AI analytics, investor perception, and decision-making layers. A simulation model grounded in machine learning dynamics, behavioral finance, and complexity theory …

Regional Drought Modulation By Enso And Iod As Indicated By The Standardized Precipitation Index, Arpit Tiwari, Preethi Nanjundan, Tanu Sharma, Ravi Ranjan Kumar, Satyaban Bishoyi Ratna

Northeast Journal of Complex Systems (NEJCS)

Understanding the modulation of drought by large-scale ocean–atmosphere teleconnections is crucial for strengthening drought prediction and resilience in India. This study investigates the influence of the El Niño–Southern Oscillation (ENSO) and the Indian Ocean Dipole (IOD) on meteorological drought characteristics across India from 1950 to 2024 using the Standardized Precipitation Index (SPI) at a 12-month timescale. Drought events were quantified in terms of frequency, duration, severity, and intensity and linked to ENSO–IOD variability through composite, correlation, and mediation analyses. Results reveal that El Niño events consistently correspond to widespread and severe droughts, particularly over central and southern India, with drought …

Information Theory Analysis Of The Solar Wind Magnetic Structures For Space Weather Prediction, Katherine Holland

Doctoral Dissertations and Master's Theses

Forecasting space weather at Earth is highly complicated, because of the limited measurements of the dynamic processes in the Sun that span multiple temporal, spatial, and energy-scales. The solar wind is a highly structured, multi-scale, evolving plasma and consists of coronal mass ejections (CMEs), stream interaction regions (SIRs), expanding flux tubes (Borovsky, 2008), and interplanetary magnetic field (IMF) discontinuities and fluctuations. The aim of this research is to improve our understanding of the evolution and dissipation of different scale-size solar wind magnetic structures as they move from the Sun-Earth Lagrange point 1 (L1) to Earth's bow shock and, ultimately, to …