Comparison Of The Equine Reference Sequence With Its Sanger Source Data And New Illumina Reads,
2015
University of Louisville
Comparison Of The Equine Reference Sequence With Its Sanger Source Data And New Illumina Reads, Jovan Rebolledo-Mendez, Matthew S. Hestand, Stephen J. Coleman, Zheng Zeng, Ludovic Orlando, James N. Macleod, Ted Kalbfleisch
Maxwell H. Gluck Equine Research Center Faculty Publications
The reference assembly for the domestic horse, EquCab2, published in 2009, was built using approximately 30 million Sanger reads from a Thoroughbred mare named Twilight. Contiguity in the assembly was facilitated using nearly 315 thousand BAC end sequences from Twilight's half brother Bravo. Since then, it has served as the foundation for many genome-wide analyses that include not only the modern horse, but ancient horses and other equid species as well. As data mapped to this reference has accumulated, consistent variation between mapped datasets and the reference, in terms of regions with no read coverage, single nucleotide variants, and small …
Secretion Of Heat-Labile Enterotoxin By Porcine-Origin Enterotoxigenic Escherichia Coli And Relation To Virulence,
2015
University of Nebraska-Lincoln
Secretion Of Heat-Labile Enterotoxin By Porcine-Origin Enterotoxigenic Escherichia Coli And Relation To Virulence, Prageeth Rukshan Wijemanne
School of Veterinary and Biomedical Sciences: Dissertations, Theses, and Student Research
Heat-labile enterotoxin (LT) is an important virulence factor secreted by some strains of porcine-origin enterotoxigenic Escherichia coli (pETEC). The prototypic human-origin strain H10407 secretes LT via a type II secretion system (T2SS), but its presence or importance in pETEC has not been established. Exposure of pETEC to glucose has been shown to result in different secretion levels of LT. Furthermore, the relationship between the level of LT secreted and the virulence potential of the respective pETEC strain has not been established. To determine the relationship between the capacity to secrete LT and virulence in wild-type (WT) pETEC, 16 strains isolated …
Development Of An In Vivo Exsheathment Assay Of Infective L3 Haemonchus Contortus Larvae In Fistualated Sheep,
2015
University of Rhode Island
Development Of An In Vivo Exsheathment Assay Of Infective L3 Haemonchus Contortus Larvae In Fistualated Sheep, Holly N. Williams, Katherine Petersson, Carly Barone
Senior Honors Projects
Purpose: Gastrointestinal nematodes (GIN) hinder the sustainable production of small ruminants on pasture and parasite resistance to chemical dewormers is becoming a growing concern. Condensed tannin containing legume forages are being tested to evaluate their anti-parasitic properties and potential contribution to an overall parasite control program for small ruminants such as sheep and goats. One of the most pathogenic GIN of small ruminants is Haemonchus contortus. The final step to full infectivity of H. contortus third stage larvae (L3) is exsheathment in the rumen. The objective of this study was to establish an in-vivo exsheathment assay in fistulated sheep …
Protective Efficacy Of Centralized And Polyvalent Envelope Immunogens In An Attenuated Equine Lentivirus Vaccine,
2015
University of Pittsburgh
Protective Efficacy Of Centralized And Polyvalent Envelope Immunogens In An Attenuated Equine Lentivirus Vaccine, Jodi K. Craigo, Corin Ezzelarab, Sheila J. Cook, Chong Liu, David Horohov, Charles J. Issel, Ronald C. Montelaro
Maxwell H. Gluck Equine Research Center Faculty Publications
Lentiviral Envelope (Env) antigenic variation and related immune evasion present major hurdles to effective vaccine development. Centralized Env immunogens that minimize the genetic distance between vaccine proteins and circulating viral isolates are an area of increasing study in HIV vaccinology. To date, the efficacy of centralized immunogens has not been evaluated in the context of an animal model that could provide both immunogenicity and protective efficacy data. We previously reported on a live-attenuated (attenuated) equine infectious anemia (EIAV) virus vaccine, which provides 100% protection from disease after virulent, homologous, virus challenge. Further, protective efficacy demonstrated a significant, inverse, linear relationship …
Mineral Composition Of Beef Cattle Carcasses,
2015
University of Nebraska-Lincoln
Mineral Composition Of Beef Cattle Carcasses, Andrea K. Watson, Jana L. Harding, Matt P. Mccurdy Curdy, Matt J. Hersom, Kristin E. Hales, Clint R. Krehbiel, Galen E. Erickson
Nebraska Beef Cattle Reports
Mineral retention was measured in 76 beef steers. Cattle were grown at different rates of gain and then finished on a common diet. Calcium and P retention were not affected by treatment and were similar between the growing and finishing periods averaging 4.2 g P and 10.8 g Ca /100 g protein gain across both experiments. As ADG during the growing period was decreased, K, Mg, and S mineral retention during the finishing period were increased. Expressing mineral retention as g/100 g protein gain reducedvariation due to animal size and ADG and suggests that current NRC predictions are accurate.
Anaerobic Digestion Of Feedlot Manure,
2015
University of Nebraska-Lincoln
Anaerobic Digestion Of Feedlot Manure, Andrea K. Watson, Adam L. Shreck, Amy M. Schmidt Schmidt, Terry J. Klopfenstein, Galen E. Erickson
Nebraska Beef Cattle Reports
Cattle diet can impact manure quality and quantity but has minimal impacts on methane production from anaerobic digestion of manure. Quality of manure, measured as OM, does affectmethane production and is largely impacted by the environment cattle are housed in and methods used to collect manure. As the amount of ash contamination of manure was increased, or OM content of the manure was decreased, organic matter degradation and methaneproduction were decreased. With adequate daily cleanout of ash from digesters, open-lot beef cattle manurecan be used for anaerobic digestion.
Mineral Composition Of Serial Slaughter Holstein Carcasses,
2015
University of Nebraska-Lincoln
Mineral Composition Of Serial Slaughter Holstein Carcasses, Andrea K. Watson, Trent J. Mcevers, Lee-Anne J. Walter Walter, Nathan D. May, Jacob A. Reed, N. Andy Cole, Ty E. Lawrence, James C. Macdonald, Galen E. Erickson
Nebraska Beef Cattle Reports
Carcasses of 115 Holstein steers were divided into lean, bone, internal cavity, hide, and fat tissues for analysis of P, Ca, K, Mg, and S retention. Every 28 days, five steers from each of two treatments, fed Zilmax for 20 days prior to harvest or not fed Zilmax, were harvested. There were no differences due to treatment or days on feed when mineral retention was expressed as g/100 g of protein gain. Expressing mineral retention relative to protein gain reduced variation due to rate of gain and animal size.
An Economic Analysis Of Conventional And Alternative
Cow-Calf Production Systems,
2015
University of Nebraska-Lincoln
An Economic Analysis Of Conventional And Alternative Cow-Calf Production Systems, Jason M. Warner, Andrea K. Watson, K. H. Jenkins Jenkins, Rick J. Rasby, Kate Brooks, Terry J. Klopfenstein
Nebraska Beef Cattle Reports
Profitability through weaning was predicted for conventional and alternative cow-calf production systems using various input price scenarios. At base input price levels, conventional systems were more economical than alternative systems. As pasture price increased, alternativesystems became cost effective. Feeding cows year-round in a confinement setting appeared the least economical; however, an alternative system combining summer drylot feeding with cornstalk grazing is projected to be economically competitive given an increasing abundance of corn residue.
Effects Of Calf Age At Weaning On Cow And Calf Performance And Feed Utilization In An Intensive Production System,
2015
University of Nebraska-Lincoln
Effects Of Calf Age At Weaning On Cow And Calf Performance And Feed Utilization In An Intensive Production System, Jason M. Warner, Curtis J. Bittner, Karla H. Jenkins Jenkins, Rick J. Rasby, Matt K. Luebbe, Galen E. Erickson, Terry J. Klopfenstein
Nebraska Beef Cattle Reports
The effects of calf weaning age on cow and calf performance, reproduction, and feed utilization were investigated in a two-year study. Early weaning increasedcow BW in January. Pregnancy rates were not impacted by calf age at weaning. Dry matter intake (DMI) was similar between normal-weaned cow-calf pairs and early-weaned cows and calves. Feed requirements and utilization were comparable between early- and normal-weaned pairs when fed high energy diets, implying weaning decisions should be made on the basis of management rather than feed efficiency.
Evaluation Of The Impact Of An Alternative Corn Residue Harvest Method On Performance And Methane Emissions From Growing Cattle,
2015
University of Nebraska-Lincoln
Evaluation Of The Impact Of An Alternative Corn Residue Harvest Method On Performance And Methane Emissions From Growing Cattle, Janessa J. Updike, Anna C. Pesta, Robert G. Bondurant Bondurant, James C. Macdonald, Samodha Fernando, Galen E. Erickson, Terry J. Klopfenstein
Nebraska Beef Cattle Reports
A growing study was conducted to evaluate the impact of alternative corn residue harvesting methods and inclusion of Rumensin® on performance and methane to carbon dioxide ratio (CH4:CO2) of steers. Use of the alternative harvesting method resulted in greater ADG and improved F:G ratio than traditionally harvested cornstalks. Rumensin increased ADG and improved DMI; however, it did not have an impacton F:G ratio. Altering the composition of baled corn residue did affect CH4:CO2, while inclusion of Rumensin, whether included in the diet on a constant or rotational basis, had no impact.
Effect Of Corn Plant Maturity On Yield And Nutrient Quality Of Corn Plants,
2015
University of Nebraska-Lincoln
Effect Of Corn Plant Maturity On Yield And Nutrient Quality Of Corn Plants, Cassandra A. Row, Adam L. Shreck, Robert G. Bondurant Bondurant, Curtis J. Bittner, Jana L. Harding, James C. Macdonald, Terry J. Klopfenstein, Galen E. Erickson
Nebraska Beef Cattle Reports
Two corn plots (short season, 102-day, and normal season, 111-day corn) were serially harvested to evaluate nutrient, digestibility, and yield change over the duration from half-milk line through black layer. Digestibility of the corn plant decreased as corn plant maturity and NDF content increased. The lower leaf in the normal season plot decreased in digestibility, but did not change in the short season plot. Little change was observed in the digestibility of the internodes across time. The NDF content of the upper plant increased in both plots. The internodes increased in NDF content across time in both plots. The results …
Digestibility Of Calcium Oxide Treated Corn Residue With De-Oiled Distillers Grains,
2015
University of Nebraska-Lincoln
Digestibility Of Calcium Oxide Treated Corn Residue With De-Oiled Distillers Grains, Sarah J. Peterson, Meredith L. Bremer, Adam L. Shreck Shreck, James C. Macdonald, Galen E. Erickson
Nebraska Beef Cattle Reports
A digestion study was conducted to evaluate diets containing calcium oxide treated corn residue in combination with de-oiled distillers grains in forage based growing diets. Chemical treatment did not affect digestibility of DM, OM, or NDF. However, concentration of distillers grains did improve DM and OM digestibility. The use of chemically treated residue in combination with distillers grains in growing diets may not impact diet digestibility.
Effects Of Dietary Fat Source And Monensin On Methane Emissions, Vfa Profile, And Performance Of Finishing Steers,
2015
University of Nebraska-Lincoln
Effects Of Dietary Fat Source And Monensin On Methane Emissions, Vfa Profile, And Performance Of Finishing Steers, Anna C. Pesta, Andrea K. Watson, Robert G. Bondurant Bondurant, Samodha C. Fernando, Galen E. Erickson
Nebraska Beef Cattle Reports
A finishing study was conducted to evaluate the effects of dietary fat source and presence or absence of monensin on performance, methane (CH4) emissions, and ruminal VFA profile of cattle. No effects on performance or VFA profile were observed. Inclusion of modified distillers grain plus solubles (MDGS) in the diet tended to increase measures of CH4 production when compared to other fat sources (corn oil or tallow), while inclusion of monensin in the finishing diet was not significant for CH4 production.
Impact Of Heifer Development System On Subsequent Gain And Reproduction,
2015
University of Nebraska-Lincoln
Impact Of Heifer Development System On Subsequent Gain And Reproduction, Hazy R. Nielson, John D. Harms, Adam F. Summers Summers, Rebecca A. Vraspir, Rick N. Funston
Nebraska Beef Cattle Reports
Replacement heifers from 2 different calving herds (March and May) were fed ad libitum hay and 4 lb of supplement/day, or were allowed to graze meadow and received 1 lb of supplement/day from mid-January to mid-April prior to both breeding seasons. Heifers from both calving herds that received hay had a greater average daily gain during the treatment period compared with meadow grazing heifers. However, heifers grazing meadow experiencedcompensatory gain during their respective breeding season, resulting in similar body weights at pregnancy diagnosis for March-calving heifers. The proportion of heifers that attained pubertybefore breeding and became pregnant was similar between …
A Comparison Of Two Implant Protocols:
Synovex-Choice/Synovex-Plus Vs. Synovex-S/Revalor-S On Steer Feedlot Performance And Carcass Characteristics,
2015
University of Nebraska-Lincoln
A Comparison Of Two Implant Protocols: Synovex-Choice/Synovex-Plus Vs. Synovex-S/Revalor-S On Steer Feedlot Performance And Carcass Characteristics, Hazy R. Nielson, Adam F. Summers, Rick N. Funston Funston
Nebraska Beef Cattle Reports
In a 2 year study, implant strategies were compared utilizing Synovex® Choice followed by Synovex Plus® or Synovex® S followed by Revalor® S. Spring-born crossbred steers were blocked by BW and randomly assignedto receive either Synovex Choice or Synovex S as the initial implant. Approximately100 days later, steers were reimplanted with Synovex Plus or Revalor S. Steers were slaughtered after 205 days on feed. There was no difference in average daily gain or hot carcass weight between treatment groups. Furthermore, there were no differences in yield grade, marbling score, or proportion of steers grading USDA Choice. Both implant regimens resulted …
Effects Of Ingestion And Collection Bag Type On
Nutrient Composition Of Forage Samples From
Esophageally Fistulated Cattle,
2015
University of Nebraska-Lincoln
Effects Of Ingestion And Collection Bag Type On Nutrient Composition Of Forage Samples From Esophageally Fistulated Cattle, Jacqueline A. Musgrave, Jared Judy, Aaron Stalker Stalker, Terry Klopfenstein, Karla Jenkins
Nebraska Beef Cattle Reports
Ingestion and mastication of forage samples adds ash. Generally, levels of CP were lower and NDF and IVOMD were similar for post-ingested versus pre-ingestedforage. Bag type (screen vs. solid) generally did not affect ash, NDF, or IVOMD. Bag did not affect CP of alfalfabut CP of grass samples from screen bags was lower than solid bags. More fresh than dry forage was recovered through the esophageal opening.
Effect Of Diet On The Rumen Microbial Community
Composition Of Growing Cattle And The Role It Plays In Methane Emissions,
2015
University of Nebraska-Lincoln
Effect Of Diet On The Rumen Microbial Community Composition Of Growing Cattle And The Role It Plays In Methane Emissions, Allison L. Knoell, Christopher L. Anderson, Anna C. Pesta Pesta, Galen E. Erickson, Terry J. Klopfenstein, Samodha C. Fernando
Nebraska Beef Cattle Reports
To understand the relationship betweenmicrobial community and methane, the microbial community of the rumen was examined by esophageally tubing cattle on a common diet and on 10 treatment diets. Microbial community analysis via 16S taq sequencing displayed structuring of microbial communities (Bacteria and Archaea) by diet. This study demonstrates that diet influences microbial community composition within the rumen, and the potential capacity to develop dietary interventionstrategies for methane mitigation and animal performance.
Effects Of Grazing On Nebraska Sandhills Meadow Forage Nutrient Content,
2015
University of Nebraska-Lincoln
Effects Of Grazing On Nebraska Sandhills Meadow Forage Nutrient Content, Jared V. Judy, Jacki A. Musgrave, L. Aaron Stalker Stalker, Karla H. Jenkins, Terry J. Klopfenstein
Nebraska Beef Cattle Reports
Nebraska Sandhills subirrigated meadow pastures were used to measure the effects of grazing on forage nutrient content in summer pastures. Non-grazed pastures had greater diet CP content than grazed pastures early in the grazing season. By late July, grazed vs. non-grazed pastures did not differ in diet CP content. Non-grazed pastures had greater in vitro organic matter disappearance compared with grazed pastures from late July through September; however, early summer pastures were not affected. Observed results indicate the greatest differences in nutrient content between grazed and non-grazed meadow pastures occur early and late in the grazing season when the majority …
Dried Distillers Grains Supplementation Of Calves Grazing Irrigated Corn Residue,
2015
University of Nebraska-Lincoln
Dried Distillers Grains Supplementation Of Calves Grazing Irrigated Corn Residue, Mandi Jones, James C. Macdonald, Galen E. Erickson Erickson, Terry J. Klopfenstein, Robby Bondurant
Nebraska Beef Cattle Reports
Steer calves grazing irrigated corn residue received supplementation of dried distillers grains plus solubles (DGS) at 0.3, 0.5, 0.7, 0.9, or 1.1% of body weight. Steers were individually supplemented daily through Calan gates. Daily gain improved linearly (0.77 lb/head/day to 2.21 lb/head/day) with increasing supplementation (1.5 lb/day to 7 lb/day). Supplementing DGS to calves grazing corn residue increased gain during the winter period.
Evaluation Of Changes In Nutritional Quality
Of Corn Residue Over Time,
2015
University of Nebraska-Lincoln
Evaluation Of Changes In Nutritional Quality Of Corn Residue Over Time, Mandi Jones, James C. Macdonald, Terry J. Klopfenstein Klopfenstein, Galen E. Erickson, Keith Glewen, Andrea K. Watson
Nebraska Beef Cattle Reports
Irrigated corn residue was sampled across time in order to determine changes in quality and proportion of corn residue as the plant dried and was exposed to effects of weathering. Corn plants from two hybrids were planted on two different planting dates and harvested at periodic intervals from August 2012 to December 2012. Proportions of stem, blade/sheath, husk/shank, and cob made up smaller components of total plant DM as it matured, with the largest relative reduction occurring in the blade/sheath or stem. Hybrid impacted TDN values primarily because the 119 day hybrid was less mature at the early sampling dates.
