Agronomy and Crop Sciences Commons^™

Enhancing Selection Intensity With High-Throughput Phenotyping Data In Plant Breeding, Ashmita Upadhyay

Graduate Theses and Dissertations

Genomic prediction (GP) has proven to be an essential tool to accelerate the cultivar development pipeline by predicting the performance of un-phenotyped lines in the field of plant breeding. However, the prediction accuracy is bounded by the heritability of the target trait, limiting the efficiency of the single-trait GP model. To overcome the limitation, a multi-trait genomic prediction model using high-throughput phenotyping (HTP) data can be used to leverage secondary traits to boost the predictive ability of the target trait. This study aimed to assess the efficiency of the multi-trait (MT)- GP model powered by HTP derived secondary traits in …

Diversity Of Gibberellin 2-Oxidase Genes In The Barley Genome Offers Opportunities For Genetic Improvement, Jingye Cheng, Yong Jia, Camilla Hill, Tianhua He, Ke Wang, Ganggang Guo, Sergey Shabala, Meixue Zhou, Yong Han, Chengdao Li

Grain and Other Field Crops Research Articles

Introduction

Gibberellin (GA) is a vital phytohormone in regulating plant growth and development. During the “Green Revolution”, modification of GA-related genes created semi-dwarfing phenotype in cereal crops but adversely affected grain weight. Gibberellin 2-oxidases (GA2oxs) in barley act as key catabolic enzymes in deactivating GA, but their functions are still less known.

Objectives

This study investigates the physiological function of two HvGA2oxgenes in barley and identifies novel semi-dwarf alleles with minimum impacts on other agronomic traits.

Methods

Virus-induced gene silencing and CRISPR/Cas9 technology were used to manipulate gene expression of HvGA2ox9 and HvGA2ox8ain barley and RNA-seq …

North Dakota Corn Efficiency Frontier: Stochastic Frontier Analysis, Bayarbat Badarch, David C. Roberts, Michael P. Popp

Agricultural Economics and Agribusiness Faculty Publications and Presentations

According to climate studies in North Dakota, the state's crop-growing season has been extended. In addition, many studies have shown technological advances in crop production. However, the state has not addressed how crop yield has been affected by weather changes. Thus, this paper investigates the state's corn (Zea mays) yield potential and efficiency measures based on agricultural input use and weather variables from 1994 to 2018. We found that the effects of temperature and precipitation on the state's corn yield frontier (potential) were greater than those of changing agricultural input variables. The stochastic frontier model indicates that the …

A Historical Assessment Of The Number Of Days Required To Plant The Arkansas Soybean Crop, Bayarbat Badarch, K. Bradley Watkins, Terry Griffin

Agricultural Economics and Agribusiness Faculty Publications and Presentations

The primary objective of this paper is to quantitatively analyze the number of acres planted per suitable fieldwork day and the total number of fieldwork days available for the complete planting of soybeans (Glycine max L.) in Arkansas. Total days to plant soybeans in each spring from 1980 to 2023 averaged about 33 days, indicating that roughly 33 days are expected, on average, from the month of April to May based on USDA-NASS weekly crop progress and condition data. Furthermore, the average soybean planted acres is estimated at 106,736 acres per day within the study period. Recently, variations in …

Use Of A Capsule Suspension Formulation Of S-Metolachlor In Fenclorim-Treated Rice, Jason K. Norsworthy, Samuel C. Noe, Thomas R. Butts, Trenton L. Roberts

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

As herbicide resistance continues to render commonly used rice herbicides ineffective, alternative sites of action are paramount to maintaining yield and producer profitability. Combining a slow-release formulation and a fenclorim seed treatment might allow the safe use of S-metolachlor in rice. Experiments were initiated in 2022 and 2023 near Colt, AR, on a silt loam soil to evaluate crop safety using a capsule suspension (CS) formulation of S-metolachlor and a fenclorim seed treatment in rice. The first experiment assessed the tolerance of two cultivars (‘Diamond’ and ‘DG263L’) to three rates (0.42, 0.84, and 1.68 kg ai ha^{−1 …}

Association Mapping For Water Use Efficiency In Soybean Identifies Previously Reported And Novel Loci And Permits Genomic Prediction, Siva K. Chamarthi, Larry C. Purcell, Felix B. Fritschi, Jeffrey D. Ray, James R. Smith, Avjinder S. Kaler, C. Andy King, Jason D. Gillman

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Soybean is a major legume crop cultivated globally due to the high quality and quantity of its seed protein and oil. However, drought stress is the most significant factor that decreases soybean yield, and more than 90% of US soybean acreage is dependent on rainfall. Water use efficiency (WUE) is positively correlated with the carbon isotopic ratio ¹³C/¹²C (C13 ratio) and selecting soybean varieties for high C13 ratio may enhance WUE and help improve tolerance to drought. Our study objective was to identify genetic loci associated with C13 ratio using a diverse set of 205 soybean maturity …

Broad-Spectrum Resistance To Fungal Foliar Diseases In Wheat: Recent Efforts And Achievements, Amira M.I. Mourad, Asmaa A.M. Ahmed, P. Stephen Baenziger, Andreas Börner, Ahmed Sallam

Department of Agronomy and Horticulture: Faculty Publications

Wheat (Triticum spp.) is one of the most important cereal crops in the world. Several diseases affect wheat production and can cause 20-80% yield loss annually. Out of these diseases, stripe rust, also known as yellow rust (Puccinia striiformis f. sp. tritici), stem rust (Puccinia graminis f. sp. tritici), leaf rust (Puccinia recondita), and powdery mildew (Blumeria graminis f. sp. tritici) are the most important fungal diseases that infect the foliar part of the plant. Many efforts were made to improve wheat resistance to these diseases. Due to the continuous advancement in …

Investigating Arbuscular Mycorrhizal Fungi-Cover Crop Interactions To Improve Sustainable Agricultural Practices, Isabel M. Zanartu, Connor Morozumi, Natalie Christian

The Cardinal Edge

Arbuscular mycorrhizal fungi (AMF) are fungal species that form beneficial relationships with plants. AMFs are known to help crops acquire important nutrients like nitrogen and phosphorus in the soil, and in return the plants provide carbon to the fungi. At least 80% of all plants partner with AMFs including staple crops such as rice, corn, wheat and soybeans. With so many plants likely relying on AMFs, current farming practices such as planting in monocultures and fallow overwintering may limit these relationships. On top of this, climate change challenges the reliability of these practices in the future. One sustainable agricultural practice …

Disentangling Genotype And Environment Specific Latent Features For Improved Trait Prediction Using A Compositional Autoencoder, Anirudha Powadi, Talukder Zaki Jubery, Michael C. Tross, James C. Schnable, Baskar Ganapathysubramanian

Department of Agronomy and Horticulture: Faculty Publications

In plant breeding and genetics, predictive models traditionally rely on compact representations of high-dimensional data, often using methods like Principal Component Analysis (PCA) and, more recently, Autoencoders (AE). However, these methods do not separate genotype-specific and environment-specific features, limiting their ability to accurately predict traits influenced by both genetic and environmental factors. We hypothesize that disentangling these representations into genotype-specific and environment-specific components can enhance predictive models. To test this, we developed a compositional autoencoder (CAE) that decomposes high-dimensional data into distinct genotype-specific and environment-specific latent features. Our CAE framework employed a hierarchical architecture within an autoencoder to effectively separate …

How Does Herbicide Resistance Change Farmer’S Weed Management Decisions? Evidence From The Roundup Ready Experiment, Huichin Sun, Terrance Hurley, George B. Frisvold, Katherine Dentzman, David Ervin, Wesley J. Everman, Jeffrey Gonsalus, Jason K. Norsworthy, Michae Owen

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Adoption of diverse weed management practices is viewed as essential for slowing the spread of herbicide-resistant (HR) weeds. Yet, adoption of diverse tactics has remained low, while there has been explosive growth of resistant weeds. This study analyzes U.S.-farm-level data to identify factors affecting adoption of diverse weed management practices. This study uses directed acyclic graphs (DAGs) to consider how practice adoption is influenced by different causal pathways between farmer and farm characteristics and farmer awareness of and concern over HR weeds. This study then uses multiple regression analysis to estimate the direct and indirect pathways that influence practice adoption. …

Industrial Hemp Biomass Negatively Affected By Herbicide Drift From Corn And Soybean Herbicides, Milos Zaric, Bruno Canella Vieira, Barbara Houston, Guilherme Sousa Alves, Samuel E. Wortman, Julie A. Peterson, Greg R. Kruger

Department of Agronomy and Horticulture: Faculty Publications

The establishment of industrial hemp (Cannabis sativa L.) fields near row crops has raised concerns about the potential adverse effects of herbicide drift on hemp production. This study examined hemp susceptibility to drift of herbicides registered for use in corn and/or soybeans. Herbicide solutions (2,4-D, dicamba, glufosinate, glyphosate, imazethapyr, lactofen, mesotrione) were applied separately in the wind tunnel (3.6 m s⁻¹ airspeed), simulating drift scenarios, with conventional TP95015EVS (TP) and air inclusion AI95015EVS (AI) flat fan nozzles calibrated to deliver 140 L ha⁻¹ carrier volume at 230 kPa. Mylar cards and hemp plants (20–25 cm tall) were placed …

Effect Of Cereal Rye Cover Crop Termination Timings On Weed Control And Corn Yield Under A Two-Pass Herbicide Program, Amar S. Godar, Jason K. Norsworthy, Tom Barber

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Cover crops, including cereal rye, are generally known to suppress weeds in various cropping systems; however, research on their effective use is lacking. This study investigated the effects of different cereal rye termination timings on weed control and corn performance in a two-pass herbicide program across 5 site-years (2021–2023) in Arkansas, USA. The herbicide program consisted of one application at cereal rye (Secale cereale) termination (cereal rye environment) or at corn (Zea mays) planting (conventional system) and another at the V4 corn stage. Palmer amaranth (Amaranthus palmeri) at V4 corn was better controlled in …

Towards An Ideal Seed Coating, J M. Scott

IGC Proceedings (1977-2023)

Coated pasture seeds have been formulated in the past based largely on "trial and error" with relatively few objective criteria being employed to define desirable formulations, A description of desirable propelties of various layers of seed coatings and of the seeds themselves is presented.

Lolium Endophyte Viability: Effect Of Seed Storage, M P. Rolston, J R. Crush, M D. Hare, K K. Moore

IGC Proceedings (1977-2023)

The effects of seed storage on the endophyte Acremonium lolii in ryegrass (Lolium perenne L.) were evaluated over 7 years. The long• term effects of 4 seed moisture contents (SMC) 8.6-13.1 %: tempemture (ambient, 5, O, -15°C) 'aitd packaging types: calico, polyethylene fi,Jm. 9-140 µm, and aluminium-polyethylene (AIP) on endophyte viability were assess·ed. • Endophyte viability was maintained by lower seed moisture content and low temperatures. In ambient warehouse conditions endophyte viability declined to zero in 12 months in calico bags,' but was maintained for 3 years at 8.6% SMC in AIP: • Endophyte viability was maintained for …

Effect Of Dormancy-Releasing Treatments On Germination Of Bahiagrass Seed, J. Jeffrey Mullahey, D S. Fisher

IGC Proceedings (1977-2023)

Low seed germination and dormant seed in bahiagrass (Paspalum nonatutum Flugge.) necessitate high seeding rates for successful pasture establishment. A study of dormancy-releasing treatments and age of seed on germination of bahiagrass was conducted in an incubator at the Southwest Florida Research and Education Center near Immokalee, Florida. Five seed treatments (Crop-Start (Solid Matrix Seed Priming, Kamterter Products Inc., Lincoln, NB), potassium nitrate (KNO3), heat/humidity, palea removed, and a check), 2 cullivars (Pensacola, Tifton 9) of bahiagrass and 2 ages (10 and 16 months) of seed were used. A significant (P<0.05) age ·x treatment interaction occurred for all response variables. Based on total germination at 28 days, % dormant seed and rate of germination, Crop-Start and heat/humidity were consistently the best treatments. Additional research on germination with dormancy-releasing treatments is needed to study the Interaction of seed age and bahiagrass cultivar.

Weed Seed Contamination: Use Of A Seed Testing Database To Identify Processing Limitations, J S. Rowarth, M P. Rolston, A A. Johnson

IGC Proceedings (1977-2023)

A computerised database maintained by the Official Seed Testing Station of New Zealand provided the opporlunity to survey weed seed contamination in clover and grass seed-lots. Broad-leaf weeds such as Slierardia arvensis, Stellaria ,nedia and Chenopodium album were the major contaminants in Trifolium repens seed-lots. In grass seed-lots the main contaminants were seeds of other grasses such as Bromus hordaeceus, Vulpia spp. and Holcus lanatus. Weed seeds were found to be a major reason for downgrading or rejection from certification of clover and grass seed-lots in New Zealand; this reflects strict quality control measures.

An Investigation In To The Effect Of Some Factors On The Germination Of Erodium Seeds, Myrna Johnston, Alfredo Olivares, Gladys Fernandez

IGC Proceedings (1977-2023)

Erodiurn seeds present variable dormancy in and even within each species. Thus, it is important to know the factors that determine this variation as related to the persistence of its species. E. rnoschatmn and E. rnalacoides seeds were collected at the end of the annual cycle at La Rinconada de Maipli (33°28'S and 7S050'W). Effects of seed sour.ce (collecting in 1986, 1988 and 1990), age (keeping seeds under laboratory conditions) and maternal factors (cutting plants at early flowering) were analysed. Seeds were tested for germination capacity and germination rate at a constant temperature of 15°C on Petri dishes provided with …

Long-Term Seed Dormancy In Poa Pratensis L. Northern Norway, Trygve S. Aamlid, Dagfinn Arntzen

IGC Proceedings (1977-2023)

Inadequate gennination has often been obseived when planting Poa pratensis L. cv. Lavang (69°N) in northern Norwegian grasslands. This investigation was intended to elucidate whether this was due lo long­term seed dormancy, Seed-lots grown in different years in northern and southern Norway and stored at O-to•c, were germinated in Jakobsen­type germinators al various combinations of temperature and light. Significant dormancy was expressed at 21 °C even after 10 years of storage. Al this constant temperature, germination was promoted by 8 h fluorescent light compared with darkness and continuous light. Al 21/ I 2°C alternating temperature, seed genninated well irrespective of …

Seed Vigour In Lucerne And White Clover, Y R. Wang, J G. Hampton

IGC Proceedings (1977-2023)

Accelerated ageing (AA) was used to assess the seed vigour of 5 lucerne (Medicago sativa L, cv. Wairau) and 8 white clover (Trifolium repens L. cv. Grasslands Huia) seed-lots. Germination prior to AA ranged from 86-94% and 87-94% for the lucerne and white clover seed-lots respectively. All seed-lots hl\d been harvested in 1988 and were certified either as basic or first generation. Germination after 72 h at 40:t0.5°C (AA test) ranged frcim 31-76% for the lucerne seed­lots and 15-56% for che white clover seed-lots, indicating significant differences in seed.vigour among lots of both species. Time of ageing influenced …

Growing Methods For The Morphological Assessment Of White Clover Cultivars Purity, J G. Hampton, E J. Musukwa

IGC Proceedings (1977-2023)

Three growing methods (field sward, field spaced plants, glasshouse plants) were compared for the morphological assessment of white clover (Trifolium repens L.) cultivar purity. Three cerlified (breeders, basic and first generation) seed-lots of cv. Grasslands Kopu and one first generation Kopu seed lot which had been mixed with seed of another cultivnr (10:1) were used to generate data. After analysis of variance (ANOVA), significant (P<0.05) reductions from the breeders seed lot siandnrd for leaf size, stolon number and leaf length/width ratio were recorded for the mixed seed· 101 in nil three growing methods, and for petiole length with the sward method only. With the glasshouse and spaced-plant melhods, slolon numbers of the basic and first generation seed-lots were reduced (P<0.05), while leaf size was lower (P<0.05) for the first generation seed-lot in lhe glasshouse. However, under OECD certification requirements, leaf size of the mixed seed lot was the only characler for which "off types" were detecled. Data coefficients of variation were no greater for the glasshouse method than the required OECD plot-test method.