Terrestrial and Aquatic Ecology Commons^™

A Kernel-Based Change Detection Method To Map Shifts In Phytoplankton Communities Measured By Flow Cytometry, Corinne Jones, Sophie Clayton, François Ribalet, E. Virginia Armbrust, Zaid Harchaoui

OES Faculty Publications

1. Automated, ship-board flow cytometers provide high-resolution maps of phytoplankton composition over large swaths of the world's oceans. They therefore pave the way for understanding how environmental conditions shape community structure. Identification of community changes along a cruise transect commonly segments the data into distinct regions. However, existing segmentation methods are generally not applicable to flow cytometry data, as these data are recorded as ‘point cloud’ data, with hundreds or thousands of particles measured during each time interval. Moreover, nonparametric segmentation methods that do not rely on prior knowledge of the number of species are desirable to map community shifts. …

Marine Phytoplankton Functional Types Exhibit Diverse Responses To Thermal Change, S. I. Anderson, A. D. Barton, Sophie Clayton, S. Dutkiewicz, T. A. Rynearson

OES Faculty Publications

Marine phytoplankton generate half of global primary production, making them essential to ecosystem functioning and biogeochemical cycling. Though phytoplankton are phylogenetically diverse, studies rarely designate unique thermal traits to different taxa, resulting in coarse representations of phytoplankton thermal responses. Here we assessed phytoplankton functional responses to temperature using empirically derived thermal growth rates from four principal contributors to marine productivity: diatoms, dinoflagellates, cyanobacteria, and coccolithophores. Using modeled sea surface temperatures for 1950-1970 and 2080-2100, we explored potential alterations to each group's growth rates and geographical distribution under a future climate change scenario. Contrary to the commonly applied Eppley formulation, our …

Lipid Markers And Compound-Specific Carbon Isotopes As Diet And Biosynthesis Reflectors In The Northern Neptune Whelk Neptunea Heros, H. Rodger Harvey, Rachel Mcmahon, Karen A. Taylor

OES Faculty Publications

A suite of lipid biomarkers plus compound-specific carbon isotopes of major sterols were determined in muscle tissues across increasing sizes of northern Neptune whelks Neptunea heros, developing eggs and potential diets to link trophic patterns, metabolism and carbon sources on the Chukchi Sea shelf. Analysis of primary prey included the northern clam Astarte borealis, water column particulate organic matter (POM) and surface sediments near the collection sites. Sterols specific to major algal groups along with algal-derived polyunsaturated fatty acids (C20:5n-3, C20:4n-3, C22:6n-3) in whelk muscle tissue reflected the importance of algal primary production to benthic consumers and its …

Effects Of Emerging Contaminants On Centrarchidae And Catostomidae In Midwestern Rivers: A Multiple Biomarker Approach, Camden Garret Nix

Masters Theses

Natural habitats of fish are gradually declining due to land use and pollution caused by industrial wastes, intensive agriculture and contamination from sewage systems. The United States has 14,780 wastewater treatment facilities that discharge effluent into navigable waters, and in some cases these discharge waters represent a considerable proportion of the water system flow. These activities make it critical to discern the effects of pollutants that are entering our waterways at a consistent rate, such as 17β-estradiol (E2) and nickel, on aquatic organisms. To determine the effects of 17β-estradiol on endocrine disruption in fish, Bluegill Sunfish (Lepomis macrochirus) …

Effects Of Wastewater Effluent On Fish Fin Morphology Of Larval Fathead Minnows (Pimephales Promelas) And Swimming Performance Of Smallmouth Buffalo (Ictiobus Bubalus), Seth Michael Bogue

Masters Theses

The Sangamon River flows across central Illinois and is mostly free flowing except in the city of Decatur where it is impounded to form Lake Decatur. The Sanitary District of Decatur (SDD) is located approximately three miles downstream of the Lake Decatur dam. For a significant portion of the year, the stretch of the Sangamon River downstream of SDD is dominated by effluent due to limited discharge from the Lake Decatur dam. This has resulted in heavy nutrient loading, most notably phosphorus, and elevated levels of nickel and other compounds in the downstream section of the river. Smallmouth buffalo ( …

Water Clarity At The River-Estuary Transition Zone: A Comparative Study Of The James, Mattaponi, And Pamunkey Sub-Estuaries, Rachel Henderson

Theses and Dissertations

Water clarity is a key parameter for monitoring water quality and often used to assess habitat suitability for submerged aquatic vegetation (SAV). Light attenuation, a measure of water clarity, is impacted by colored dissolved organic matter (CDOM), and by suspended particulates which include living and non-living components. We anticipated that the relative importance of these factors in regulating light attenuation would vary among the upper portions of three sub-estuaries differing in morphometry, hydrology, and degree of human influence. The James is characterized by eutrophic conditions and high algal abundance, whereas the Mattaponi and Pamunkey exhibit lower phytoplankton production. The Mattaponi …

The Reconstruction Of Hatchery Creek: Effects On Macroinvertebrate And Fish Community Dynamics, Patrick Vrablik

Murray State Theses and Dissertations

Hatchery Creek is a restored stream in Jamestown, KY that drains Wolf Creek National Fish Hatchery. The previous degraded channel of Hatchery Creek caused large sediment plumes in the Lower Cumberland River and was restored to decrease sediment loss and provide the opportunity for a self-sustaining trout population. I predicted that the increased amount of habitat would increase taxa richness, abundance and biomass of macroinvertebrates. Macroinvertebrates were monitored in three periods; the degraded period, a one-year recovery period, and a restored period using surber and kicknet samples in order to determine biomass, abundance, diversity, taxa richness, and macroinvertebrate biotic index. …

Using New And Long-Term Multi-Scale Remotely Sensed Data To Detect Recurrent Fires And Quantify Their Relationship To Land Cover/Use In Indonesian Peatlands, Yenni Vetrita

Electronic Theses and Dissertations

Indonesia has committed to reducing its greenhouse gases emissions by 29% (potentially up to 41% with international assistance) by 2030. Achieving those targets requires many efforts but, in particular, controlling the fire problem in Indonesia’s peatlands is paramount, since it is unlikely to diminish on its own in the coming decades. This study was conducted in Sumatra and Kalimantan peatlands in Indonesia. Four MODIS-derived products (MCD45A1 collection 5.1, MCD64A1 (collection 5.1 and 6), FireCCI51) were initially assessed to explore long-term fire frequency and land use/cover change relationships. The results indicated the product(s) could only detect half of the fires accurately. …

The Impact Of Tidal Elevation And Climate Change On The Growth And Performance Of Balanus Glandula, Sam Martin

Pitzer Senior Theses

Tidal elevation affects the survival, growth, and performance of intertidal organisms because it regulates their exposure to heat, waves, food availability, and a variety of other abiotic factors. While previous research has explored the relationship between temperature and the performance of the barnacle Balanus glandula, there are unanswered questions about how tidal elevation affects B. glandula performance and growth. I compared the growth of B. glandula at three tidal elevations in Friday Harbor, Washington, and estimated the metabolic cost of emersion at each tidal elevation using a cost equation gained from thermal performance curves and average daily maximum temperatures. …

Impact Of Arbuscular Mycorrhizal Fungi On Conyza Canadensis Drought Responses And Possible Mechanisms, Kian G.M. Speck, Ylva Lekberg, Anna Sala

Undergraduate Theses, Professional Papers, and Capstone Artifacts

• Arbuscular mycorrhizal fungi (AMF) are important plant mutualists that can facilitate plant responses to various environmental stressors, such as drought. A plant that may benefit from AMF-induced drought tolerance is Conyza canadensis due to its ability to thrive in dry conditions and its high colonization rate. However, no studies have researched C. canadensis in this context and the exact mechanisms of AMF-induced drought tolerance are still unknown.
• To better understand if and how AMF facilitate drought response in C. canadensis, we conducted a greenhouse experiment comparing the response of mycorrhizal and non-mycorrhizal plants to three watering levels. We measured …

Compiled Dataset From The National Reservoir Research Program 1989 Dataset, Nicky M. Faucheux, Leandro E. Miranda

CFR Publications

This dataset was compiled from the National Reservoir Research Program 1989 dataset. The NRRP dataset includes data from rotenone and creel studies at reservoirs throughout the continental US during the 1980s. We compiled the species level biomass data into total biomass for each of five trophic guilds (piscivores, detritivores, herbivores, invertivores, and planktivores). This compiled dataset was used to investigate the Cascading Reservoir Continuum Concept across 16 river basins in a study conducted by the 2020 Management of Impounded Rivers Class.

Density Data For Lake Ontario Benthic Invertebrate Assemblages From 1964 To 2018, Lyubov E. Burlakova, Alexander Karatayev, Allison R. Hrycik, Susan Daniel, Knut Mehler, Lars G. Rudstam, James M. Watkins, Ronald Dermott, Jill Sharold, Ashley K. Elgin, Thomas F. Nalepa, Elizabeth K. Hinchey, Stephen J. Lozano

Great Lakes Center Faculty Publications

Benthic invertebrates are important trophic links in aquatic food webs and serve as useful bioindicators of environmental conditions because their responses integrate the effects of both water and sediment qualities. However, long-term data sets for benthic invertebrate assemblages across broad geographic areas are rare and, even if collected, historic data sets are often not readily accessible. This data set provides densities of benthic macroinvertebrates for all taxa collected during lake-wide surveys in Lake Ontario, a Laurentian Great Lake, from 1964 to 2018. This information resulted from surveys funded by the governments of the United States and Canada to investigate the …

Beaver Moderated Fire Resistance In The North Cascades And Potential For Climate Change Adaptation, Joseph John Weirich Iii

EWU Masters Thesis Collection

Climate change and fire suppression have altered historic fire regimes, creating conditions for larger, more intense fires. Intense burns can alter watershed hydrology, increasing the potential for harmful channel incision, which impairs riparian ecosystem function by lowering the water table, disconnecting floodplains from aquatic environments. However, wetlands and functioning riparian zones can reduce burn intensity. Beaver, with their unique ability to build dams, can restore incised and degraded streams, store water, and expand wetland environments, potentially decreasing wildfire intensity, fire spread and create fire breaks across the landscape. My objective was to test the hypothesis that beaver impoundments increase landscape …

Aquatic Macrophyte Communities In Five Sibley County (Minnesota) Lakes And The Factors That Affect Their Distribution, Samuel A. Schmid

All Graduate Theses, Dissertations, and Other Capstone Projects

The purposes of this study are to 1) quantify the shifts in the macrophyte community structure of five lakes in Sibley County, and 2) to assess the relationships between the macrophyte communities and abiotic factors in these five lakes. In both the early and late growing season of 2019, point-intercept surveys were conducted on High Island Lake, Titlow Lake, Schilling Lake, Silver Lake, and Clear Lake. At each point, water depth was recorded, and all macrophytes sampled were identified and recorded as “present.” There was not a late season survey conducted for High Island Lake in 2019 due to a …

Evaluation Of Methods For The Restoration Of Native Grasslands On Abandoned Center Pivots In The Sandsage Prairies Of Southwestern Kansas, Alonso Barragan-Martinez

Master's Theses or Doctor of Nursing Practice

Throughout southwestern Kansas thousands of acres of native grassland have been converted to cropland for agricultural use, reducing native prairie by over 60% in the sandsage prairie. Due to low precipitation and arid conditions, much of these croplands are irrigated by center pivot irrigation systems fed by the Ogallala Aquifer. These fields are abandoned when the aquifers dry up, resulting in erosion of the unused farmland. Conservation programs such as the Conservation Reserve Enhancement Program (CREP) were established to address this problem but have been unsuccessful in restoring native grasslands in abandoned croplands in southwestern Kansas. We hypothesized that insect …

Persistence Of Biogeochemical Alterations Of Deep-Sea Sediments By Bottom Trawling, S. Paradis, M. Goñi, Pere Masqué, R. Durán, M. Arjona-Camas, A. Palanques, P. Puig

Research outputs 2014 to 2021

Bottom trawling grounds have been expanding to deeper areas of the oceans since the mid-XXth century, and mitigating strategies aimed to protect fish stocks, such as temporal trawling closures, have recently been implemented. Here we investigated the biogeochemical properties of sediment from a deep-sea trawling ground in Palamós Canyon (NW Mediterranean) to assess the effects of a 2-months trawling closure in the recovery of sedimentary organic matter. In comparison to untrawled areas, the continuous erosion and sediment mixing in trawling grounds led to coarser reworked sediments impoverished in organic carbon (∼30% loss) and promoted the degradation of labile compounds (52–70% …

Natural Habitat Of Bali Starling (Leucopsar Rothschildi) In Bali Barat National Park, Indonesia, Sutomo Sutomo, Eddie Van Etten

Research outputs 2014 to 2021

The Indonesian tropical savannas and dry forests provide habitats to various endemic wildlife. Unfortunately, a few of these endemic species are now seriously threatened and are red listed in the conservation status of International Union for Conservation of Nature (IUCN). Among these species, the Bali starling or Bali mynah Leucopsar rotschildi, locally known as Jalak Bali, is now mostly restricted to the Bali Barat National Park. Given the high extinction risk faced by such species, conservation programs require multidisciplinary approaches that would address both the biological attributes of the species itself and their habitat requirements. Regrettably, for many species, their …

Factors Driving The Compositional Diversity Of Apis Mellifera Bee Venom From A Corymbia Calophylla (Marri) Ecosystem, Southwestern Australia, Daniela Scaccabarozzi, Kenneth Dods, Thao T. Le, Joel P. A. Gummer, Michele Lussu, Lynne Milne, Tristan Campbell, Ben Pan Wafujian, Colin Priddis

Research outputs 2014 to 2021

Bee venom (BV) is the most valuable product harvested from honeybees ($30 - $300 USD per gram) but marginally produced in apiculture. Though widely studied and used in alternative medicine, recent efforts in BV research have focused on its therapeutic and cosmetic applications, for the treatment of degenerative and infectious diseases. The protein and peptide composition of BV is integral to its bioactivity, yet little research has investigated the ecological factors influencing the qualitative and quantitative variations in the BV composition. Bee venom from Apis mellifera ligustica (Apidae), collected over one flowering season of Corymbia calophylla (Myrtaceae; marri) was characterized …

Kelp-Associated Microbes Facilitate Spatial Subsidy In A Detrital-Based Food Web In A Shoreline Ecosystem, Charu Lata Singh, Megan J. Huggett, Paul S. Lavery, Christin Säwström, Glenn A. Hyndes

Research outputs 2014 to 2021

Microbes are ubiquitous but our knowledge of their effects on consumers is limited in benthic marine systems. Shorelines often form hotspots of microbial and detritivore activity due to the large amounts of detrital macrophytes that are exported from other coastal ecosystems, such as kelp forests, and accumulate in these systems. Shoreline ecosystems therefore provide a useful model system to examine microbial-detritivore interactions. We experimentally test whether bacteria in the biofilm of kelp provide a bottom-up influence on growth and reproductive output of detritivores in shorelines where detrital kelp accumulates, by manipulating the bacterial abundances on kelp (Ecklonia radiata). The growth …

An Evaluation Of Antiparasitics Used To Treat The Sea Louse, Caligus Rogercresseyi, In Chilean Salmonid Farming, Dayla Woller

Scripps Senior Theses

Sea lice pose a global threat to open-net salmonid farming. As Chile is the second largest Atlantic salmon producer, they have a vested interest in mitigating infestations and increasing production. However, this will not be possible without 1) increased research on the underlying mechanisms behind sea lice infestations that will inform 2) governmental regulation of salmon farming. This increase in research and governmental regulation will only be possible through transparency on pesticide practices and sea louse monitoring data from companies operating in Chile. Taking these steps would bring Chile closer to being the largest producer of Atlantic salmon and an …