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Incomplete Denitrification In Thermus Species, Chrisabelle Mefferd 2016 University of Nevada, Las Vegas

Incomplete Denitrification In Thermus Species, Chrisabelle Mefferd

UNLV Theses, Dissertations, Professional Papers, and Capstones

Members the bacterial genus Thermus have been shown to be incomplete denitrifiers, terminating with nitrite or nitrous oxide (N2O). However, the ability to carry out denitrification and the evolution of nitrogen oxide reductase genes in Thermus remains poorly understood. This study tests the hypothesis that incomplete denitrification is common in Thermus and seeks to uncover patterns in the evolution of denitrification pathways in Thermus. Denitrification capacity was determined in a collection of 25 strains representing ten species of Thermus and phylogenetic analysis was performed to determine whether denitrification genes evolved horizontally in Thermus. No strains in this study reduced nitrate …


Cephalopods Are Best Candidates For Invertebrate Consciousness, Jennifer A. Mather, Claudio Carere 2016 Psychology, University of Lethbridge

Cephalopods Are Best Candidates For Invertebrate Consciousness, Jennifer A. Mather, Claudio Carere

Animal Sentience

Insects might have been the first invertebrates to evolve sentience, but cephalopods were the first invertebrates to gain scientific recognition for it.


Land Cover Data For The Mississippi-Alabama Barrier Islands, 2010-2011 Arcgis V10.3 Geodatabase, Gregory A. Carter, Carlton P. Anderson, Kelly L. Lucas, Nathan L. Hopper 2016 University of Southern Mississippi

Land Cover Data For The Mississippi-Alabama Barrier Islands, 2010-2011 Arcgis V10.3 Geodatabase, Gregory A. Carter, Carlton P. Anderson, Kelly L. Lucas, Nathan L. Hopper

Land Cover Data for the Mississippi-Alabama Barrier Islands, 2010-2011

Land cover on the Mississippi-Alabama barrier islands was surveyed in 2010-2011 as part of continuing research on island geomorphic and vegetation dynamics following the 2005 impact of Hurricane Katrina. Results of the survey include sub-meter GPS location, a listing of dominant vegetation species and field photographs recorded at 375 sampling locations distributed among Cat, West Ship, East Ship, Horn, Sand, Petit Bois and West Dauphin Islands. The survey was conducted in a period of intensive remote sensing data acquisition over the northern Gulf of Mexico by federal, state and commercial organizations in response to the 2010 Macondo Well (Deepwater Horizon) …


Caterpillars, Consciousness And The Origins Of Mind, Arthur S. Reber 2016 University of British Columbia

Caterpillars, Consciousness And The Origins Of Mind, Arthur S. Reber

Animal Sentience

A novel framework for the origins of consciousness and mind, the Cellular Basis of Consciousness (CBC), is presented. The model is based on a simple, perhaps radical axiom: subjectivity is an inherent feature of particular kinds of organic form. Experiential states, including those denoted as "mind" and "consciousness," are present in the most primitive species. The model has several conceptual and empirical virtues, among them: (a) it (re)solves the problem of how minds are created by brains ─ also known as the "Hard Problem" (Chalmers 1995) ─ by revealing that the apparent difficulty results from a category error, (b) it …


The North American Geese: Their Biology And Behavior, Paul A. Johnsgard 2016 University of Nebraska - Lincoln

The North American Geese: Their Biology And Behavior, Paul A. Johnsgard

Zea E-Books Collection

The eight currently recognized species of North American geese are part of a familiar group of birds collectively called waterfowl, all of which are smaller than swans and generally larger than ducks. They include the most popular of our aquatic gamebirds, with several million shot each year by sport hunters. Our two most abundant waterfowl, the Canada goose and snow goose, have populations collectively totaling about 15 million individuals. Like swans, the lifelong pairbonding of geese, their familial care, and prolonged social attachment to their offspring are legendary. Their seasonal migratory flights sometimes span thousands of miles, and the sight …


Effects Of Shoreline Dynamics On Saltmarsh Vegetation, Shailesh Sharma, Joshua Goff, Ryan M. Moody, Ashley McDonald, Dorothy Byron, Kenneth L. Heck Jr., Sean Powers, Carl Ferraro, Just Cebrian 2016 University of South Alabama

Effects Of Shoreline Dynamics On Saltmarsh Vegetation, Shailesh Sharma, Joshua Goff, Ryan M. Moody, Ashley Mcdonald, Dorothy Byron, Kenneth L. Heck Jr., Sean Powers, Carl Ferraro, Just Cebrian

University Faculty and Staff Publications

We evaluated the impact of shoreline dynamics on fringing vegetation density at mid- and low-marsh elevations at a high-energy site in the northern Gulf of Mexico. Particularly, we selected eight unprotected shoreline stretches (75 m each) at a historically eroding site and measured their inter-annual lateral movement rate using the DSAS method for three consecutive years. We observed high inter-annual variability of shoreline movement within the selected stretches. Specifically, shorelines retrograded (eroded) in year 1 and year 3, whereas, in year 2, shorelines advanced seaward. Despite shoreline advancement in year 2, an overall net erosion was recorded during the survey …


Biodiversity Of Medicinal Plants In The Highlands: Problems And Perspectives, Vyacheslav Dushenkov 2016 CUNY Hostos Community College

Biodiversity Of Medicinal Plants In The Highlands: Problems And Perspectives, Vyacheslav Dushenkov

Publications and Research

Climate change is affecting medicinal plants around the world and could ultimately lead to losses of some key species, in particular species endemic to a region and causing plants to migrate to new ranges. As the situation unfolds, climate change may become a pressing issue for the herbal community, affecting medicinal plant supply chains with varying requirements for plant cultivation, resource management in the wild, harvesting, processing, and importantly marketing.


Are Animals Persons?, Mark Rowlands 2016 University of Miami

Are Animals Persons?, Mark Rowlands

Animal Sentience

It is orthodox to suppose that very few, if any, nonhuman animals are persons. The category “person” is restricted to self-aware creatures: humans (above a certain age) and possibly some of the great apes and cetaceans. I argue that this orthodoxy should be rejected, because it rests on a mistaken conception of the kind of self-awareness relevant to personhood. Replacing this with a sense of self-awareness that is relevant requires us to accept that personhood is much more widely distributed through the animal kingdom.


Quantifying Greenhouse Gas Flux Of Restored Vs. Unrestored Wetlands: A Case Study At Prairie Wolf Slough, Matthew Connors, Beth Lawrence 2016 DePaul University

Quantifying Greenhouse Gas Flux Of Restored Vs. Unrestored Wetlands: A Case Study At Prairie Wolf Slough, Matthew Connors, Beth Lawrence

DePaul Discoveries

Wetlands provide ecological services such as cleansing the water supply, sequestering carbon, and providing habitat for wildlife, however wetland restoration often alters the greenhouse gas flux of the site. Our study aims to investigate the effects of wetland restoration on greenhouse gas flux at Prairie Wolf Slough. We did this by comparing greenhouse gas flux on matching hydric soil series from the restored wetland with an adjacent abandoned agricultural field. We measured known controls of greenhouse gas flux such as soil moisture and soil temperature. We found that there was no detectable methane and nitrous oxide flux at either site, …


Insects Have The Capacity For Subjective Experience, Colin Klein, Andrew B. Barron 2016 Macquarie University, Australia

Insects Have The Capacity For Subjective Experience, Colin Klein, Andrew B. Barron

Animal Sentience

To what degree are non-human animals conscious? We propose that the most meaningful way to approach this question is from the perspective of functional neurobiology. Here we focus on subjective experience, which is a basic awareness of the world without further reflection on that awareness. This is considered the most basic form of consciousness. Tellingly, this capacity is supported by the integrated midbrain and basal ganglia structures, which are among the oldest and most highly conserved brain systems in vertebrates. A reasonable inference is that the capacity for subjective experience is both widespread and evolutionarily old within the vertebrate lineage. …


Utilitarianism Generalized To Include Animals, Yew-Kwang Ng 2016 Nanyang Technological University

Utilitarianism Generalized To Include Animals, Yew-Kwang Ng

Animal Sentience

In response to the seventeen commentaries to date on my target article on reducing animal suffering, I propose that the term “welfarism” (when used pejoratively by animal advocates) should be qualified as “anthropocentric welfarism” so as to leave “welfarism” simpliciter to be used in its generic sense of efforts to improve conditions for those who need it. Welfarism in this benign sense — even in its specific utilitarian form (maximizing the sum total of net welfare) with long-term future effects and effects on others (including animals) appropriately taken into account — should be unobjectionable (even if not considered sufficient by …


Cross-Species Mind-Reading, Stevan Harnad 2016 Université du Québec à Montréal & University of Southampton

Cross-Species Mind-Reading, Stevan Harnad

Animal Sentience

We can never be sure anyone else is sentient. But we can be sure enough in the case of other people, nonhuman primates, mammals, birds, fish, lower vertebrates and invertebrates as to make scepticism academic and otiose (not to mention monumentally cruel). The only genuinely uncertain kinds of cases are jellyfish, microbes and plants. The rest is not about whether but what they are feeling.


My Orgasms Cannot Be Traded Off Against Others’ Agony, Stevan Harnad 2016 Université du Québec à Montréal & University of Southampton

My Orgasms Cannot Be Traded Off Against Others’ Agony, Stevan Harnad

Animal Sentience

Only I can calculate my own welfare as net pleasure minus pain. No one else can do that calculation for me – nor for a population, and especially not averaging across some individuals’ pleasure and other individuals’ pain. Pain and pleasure are incommensurable and only pain matters morally. To maximize welfare is to minimize pain.


In Praise Of Fishes: Précis Of What A Fish Knows (Balcombe 2016), Jonathan Balcombe 2016 Humane Society Institute for Science and Policy

In Praise Of Fishes: Précis Of What A Fish Knows (Balcombe 2016), Jonathan Balcombe

Animal Sentience

Our relationship to fishes in the modern era is deeply problematic. We kill and consume more of them than any other group of vertebrates. At the same time, advances in our knowledge of fishes and their capabilities are gaining speed. Fish species diversity exceeds that of all other vertebrates combined, with a wide range of sensory adaptations, some of them (e.g., geomagnetism, water pressure and movement detection, and communication via electricity) alien to our own sensory experience. The evidence for pain in fishes (despite persistent detractors) is strongly supported by anatomical, physiological and behavioral studies. It is likely that fishes …


Sentience As Moral Consideration And Disvalue In Nature, Daniel Dorado 2016 Animal Ethics

Sentience As Moral Consideration And Disvalue In Nature, Daniel Dorado

Animal Sentience

In recent work Ng assumes that it is good to engage in activities aimed at promoting ecosystem conservation. The only way Ng can derive this from the axiology he assumes (the view that wellbeing is the only intrinsically valuable or disvaluable thing) would be to assume that ecosystem conservation would benefit the individuals involved. This can be so as long as value prevails over disvalue in the target environments. Ng seems to assume this is indeed the case, but he does not explain why, and it is a claim that goes against the conclusions he has argued for previously (Ng …


Inalienable Rights And Pluralism In Animal Advocacy, Beril Sözmen 2016 Istanbul Technical University

Inalienable Rights And Pluralism In Animal Advocacy, Beril Sözmen

Animal Sentience

I comment on two of Ng’s suggestions. There is a lack of support for his suggestion that some experiments on individual animals will be useful for future success, so they should be permitted. I also question his recommendation that animal advocacy should focus on farmed animals first and wild animals later. The lack of solid support for why this would be a more effective strategy leads me to suggest a more pluralistic support of a variety of types of advocacy.


Biofouling Management In The Pacific Northwest And Predation On Native Versus Non-Native Ascidians, Erin Suzanne Kincaid 2016 Portland State University

Biofouling Management In The Pacific Northwest And Predation On Native Versus Non-Native Ascidians, Erin Suzanne Kincaid

Dissertations and Theses

Marine non-native species threaten economic and environmental health, making it crucial to understand factors that make them successful. Research on these species, therefore, allows for greater preparedness and informed management of biological invasions and increases understanding of elements structuring biological communities. Among the marine non-native species, and particularly the fouling community, non-native ascidians are a taxon of particular concern because they can crowd out native benthic species and smother mariculture products. This thesis addresses management for ascidians and other fouling organisms and includes research on the invasiveness of this taxon in addition to the invasibility of recipient fouling communities. On …


Changing Attitudes Towards Animals In The Wild And Speciesism, Oscar Horta 2016 University of Santiago de Compostela

Changing Attitudes Towards Animals In The Wild And Speciesism, Oscar Horta

Animal Sentience

I argue that despite Ng’s claim that we should postpone the defense of those animals that live in the wild, we do have reasons to start spreading concern for them now. We can do it by (i) changing public attitude by heightening awareness of speciesism, by which we will also challenge animal exploitation; and (ii) by disseminating information about the situation of animals in the wild.


Why We Should Not Postpone Awareness Of Wild Animal Suffering, Catia Faria 2016 Universitat Pompeu Fabra

Why We Should Not Postpone Awareness Of Wild Animal Suffering, Catia Faria

Animal Sentience

Ng (2016) restates his case for the importance of wild animal suffering (1995). Nevertheless, he suggests that the most effective way to reduce nonhuman suffering overall is to give short-term priority to the suffering of farmed animals. It is not clear that Ng puts forward a successful case. Our current efforts to prevent animal suffering overall should also include raising awareness of wild animal suffering now as well as promoting research on safe and feasible ways to prevent wild animal suffering in the future.


Freshwater Metaviromics And Bacteriophages: A Current Assessment Of The State Of The Art In Relation To Bioinformatic Challenges, Katherine Bruder, Kema Malki, Alexandria Cooper, Emily Sible, Jason W. Shapiro, Siobhan C. Watkins, Catherine Putonti 2016 Loyola University Chicago

Freshwater Metaviromics And Bacteriophages: A Current Assessment Of The State Of The Art In Relation To Bioinformatic Challenges, Katherine Bruder, Kema Malki, Alexandria Cooper, Emily Sible, Jason W. Shapiro, Siobhan C. Watkins, Catherine Putonti

Bioinformatics Faculty Publications

Advances in bioinformatics and sequencing technologies have allowed for the analysis of complex microbial communities at an unprecedented rate. While much focus is often placed on the cellular members of these communities, viruses play a pivotal role, particularly bacteria-infecting viruses (bacteriophages); phages mediate global biogeochemical processes and drive microbial evolution through bacterial grazing and horizontal gene transfer. Despite their importance and ubiquity in nature, very little is known about the diversity and structure of viral communities. Though the need for culture-based methods for viral identification has been somewhat circumvented through metagenomic techniques, the analysis of metaviromic data is marred with …


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