Terrestrial and Aquatic Ecology Commons^™

Impact Of Severe Drought Conditions On Ammonia-Oxidizing Bacterial Communities In A Connecticut Salt Marsh, Jack Beltz

Biology Honors Papers

Salt marsh ecosystems exist along a boundary between fresh and saline waterways, and their function is regulated by a variety of physical and chemical cycles. Microbial communities hold many important roles as mediators in these cycles, and like other aspects of the ecosystem are sensitive to changes in their environment. Climate change is expected to bring many obstacles for salt marshes around the world, one being periods of sustained drought. In this study we investigate the impact that a severe seasonal drought had on the abundance and community composition of microbes involved in nitrogen cycling, specifically ammonia-oxidizing bacteria (AOB). An …

Modeling Chlorophyll Concentrations On The Ohio River Using Remotely Sensed Data, Thaddaeus Stephen Tuggle

Theses, Dissertations and Capstones

Traditional direct water quality methodologies limit the ability to spatially and temporally predict algal blooms in lotic systems due to the size and characteristics of large river systems. Algal blooms potentially can be predicted by knowing the spatial and temporal patterns of change in cyanobacteria concentrations at large scales. Remote sensing studies investigating freshwater algal blooms, some known to secrete harmful toxins, are primarily conducted on lentic systems while large lotic systems are greatly ignored. In this study I developed a chlorophyll concentration estimation model for the Ohio River using a satellite remote sensing approach. Ground-truth water quality measures, including …

Freshwater Mussels Of The Greenup Navigational Pool, Ohio River, With A Comparison To Fish Host Communities, Mitchell David Kriege

Theses, Dissertations and Capstones

The Ohio River was historically a free-flowing system with diverse fish and freshwater mussel communities. Heavy industrialization, erosion from deforestation, and wide scale damming during the early-mid 20th century decimated riverine life. While mussel declines are well documented in the United States, in big river systems, freshwater mussel populations are poorly understudied. This thesis project mapped the mussel communities and site-specific sediments of the Greenup pool in the Ohio River for comparison to 2016 nighttime electrofishing data, provided by ORSANCO. Qualitative SCUBA surveys were performed at 18 randomly selected sites and two fixed sites between July and September. Each site …

Amphibians Among Road-Rut Pools In West Virginia, Abby L. Sinclair

Theses, Dissertations and Capstones

As anthropogenic environmental stressors such as urbanization continue to increase, it is necessary to understand their impact on amphibian ecology. Due largely to their biphasic life history amphibians are negatively impacted by the destruction of lotic habitats i.e., wetlands for the creation of roads and urban centers. I examined the effects of three human-made road rut pools on the reproductive success and species richness of amphibians in southwest West Virginia from May to October 2012. I employed three detection techniques: drift fence pitfall trap arrays, funnel traps and dipnet sampling. Additionally, habitat covariates were taken (i.e., water depth) at each …

Modular Structure In Fish Co-Occurrence Networks: A Comparison Across Spatial Scales And Grouping Methodologies, Daniel Mcgarvey Dr., Joseph Veech

Environmental Studies Publications

Network modules are used for diverse purposes, ranging from delineation of biogeographical provinces to the study of biotic interactions. We assess spatial scaling effects on modular structure, using a multi-step process to compare fish co-occurrence networks at three nested scales. We first detect modules with simulated annealing and use spatial clustering tests (interspecific distances among species’ range centroids) to determine if modules consist of species with broadly overlapping ranges; strong spatial clustering may reflect environmental filtering, while absence of spatial clustering may reflect positive interspecific relationships (commensalism or mutualism). We then use non-hierarchical, multivariate cluster analysis as an alternative method …

Social Conflict On The Seas: Links Between Overfishing-Induced Marine Fish Stock Declines And Forced Labor Slavery, Jessica L. Sparks

Electronic Theses and Dissertations

Despite media attention detailing labor abuses in fisheries, social-ecological systems research has largely failed to consider whether fish stock declines could be contributing to increases in forced labor slavery. Empirical fisheries data suggests, though not a ubiquitous response to declining stocks, many vessels will fish longer, farther from shore, and deeper in waters to maintain yields. This effort intensification increases production costs, and Brashares et al. (2014), consistent with slavery theory, posited cheap and/or unpaid labor as an approach to offset increasing costs and continue harvesting fish species at a rate otherwise cost-prohibitive.

Using fuzzy cognitive mapping - a participatory, …

Estimating Exploitation Rates In The Alabama Red Snapper Fishery Using A High-Reward Tag–Recapture Approach, Dana K. Sackett, Mattgew Catalano, J. Marcus Drymon, Sean P. Powers, Mark Albins

University Faculty and Staff Publications

Accurate estimates of exploitation are essential to managing an exploited fishery. However, these estimates are often dependent on the area and vulnerable sizes of fish considered in a study. High-reward tagging studies offer a simple and direct approach to estimating exploitation rates at these various scales and in examining how model parameters impact exploitation rate estimates. These methods can ultimately provide a better understanding of the spatial dynamics of exploitation at smaller local and regional scales within a fishery—a measure often needed for more site-attached species, such as the Red Snapper Lutjanus campechanus. We used this approach to tag 724 …

Post-Darwin Skepticism And Run-Of-The-Mill Suicide, John Hadley

Animal Sentience

Peña-Guzmán’s depiction of the opponent of animal suicide as a conservative is a straw man. It is possible to accept that animals are self-conscious and reflexive yet still reject the view that they have the mental wherewithal to commit run-of-the-mill suicide. That animal behaviour can be positioned on a continuum of self-destructive behaviour does not establish that animals can intentionally kill themselves.

An Adaptationist Perspective On Animal Suicide, Timothy P. Racine

Animal Sentience

Peña-Guzmán’s discussion of suicide in nonhuman animals has broad implications. In this commentary, I focus on the logical relation between suicide and intention. Proximate cause must be distinguished from ultimate function in explanations of suicide. I briefly discuss two adaptationist accounts of suicidal behavior.

Lessons From Chimpanzee Sign Language Studies, Mary Lee Jensvold

Animal Sentience

Claims are often made about behaviors being unique to humans; the evidence usually shows they are not. Sign language studies on chimpanzees may provide a useful model for comparative studies of suicide. A productive approach to comparative studies is to focus on observable behaviors rather than getting lost in the pitfalls of vague definitions and changing measures.

Can Nondolphins Commit Suicide?, David M. Peña-Guzmán

Animal Sentience

This Response addresses the scientific and philosophical criticisms of my 2017 target article “Can nonhuman animals commit suicide?” It defends my key claims and explores topics (such as animal judgment, animal theory of mind, and the evolution of suicide) that did not appear in the original article. It also points out areas in which further research is needed and concludes that we should be wary of accusations of “anthropomorphism” in debates about animal suicide.

Compression And Relaxation Of Fishing Effort In Response To Changes In Length Of Fishing Season For Red Snapper (Lutjanus Campechanus) In The Northern Gulf Of Mexico, Sean P. Powers, Kevin Anson

University Faculty and Staff Publications

A standard method used by fisheries managers to decrease catch and effort is to shorten the length of a fishery; however, data on recreational angler response to this simple approach are surprisingly lacking. We assessed the effect of variable season length on daily fishing effort, measured by using numbers of boat launches per day, anglers per boat, and anglers per day from video observations, in the recreational sector of the federal fishery for red snapper (Lutjanus campechanus) in coastal Alabama. From 2012 through 2017, season length fluctuated from 3 to 40 d. Daily effort, measured by using mean number of …

Dna Extraction And Microsatellite Amplification Of Daphnia Pulicaria Resting Eggs: Analysis Of Allele Frequencies Through Time, Anna Ries

Departmental Honors Projects

A paleoecological approach allows for the study of genetic change in populations over longer periods of time than would be possible if one were sampling populations from year to year. Daphnia and other cladoceran zooplankton are amenable to this type of study because they produce diapausing embryos (ephippial eggs) when they sexually reproduce, and these resting eggs can remain viable for decades to centuries in lake sediments. This study uses paleoecological methods as well as a new methodology for ephippial DNA extraction and amplification to assay for genetic variation in ephippial eggs obtained from sediments of varying ages from Square …

Data: Pre-Fire Disturbance History Modulates Relationships Between Ground Cover And Post-Fire Conifer Regeneration, Nathan Gill, Dan Jarvis, Tom Veblen, John Rogan, Dominik Kulakowski

Student Works

Understory vegetation and ground cover drive many important ecosystem processes, including tree seedling regeneration. The exact effect of ground cover on tree seedling establishment, survival, and growth depends on biophysical context. In subalpine forests, this context is largely determined by disturbances such as beetle outbreak, blowdown, and fire. Compounded disturbances that overlap in short succession can alter stand properties and trajectories in ways that are not predictable from the additive impact of individual disturbances. The aim of this study is to examine how compounded Dendroctonus rufipennis (spruce beetle; SB) outbreak followed by fire and compounded wind blowdown followed by fire …

Animal Suicide: Evolutionary Continuity Or Anthropomorphism?, Antonio Preti

Animal Sentience

Evolutionary processes are characterized by both continuity and discontinuity. Evidence on suicide in nonhuman animals is faint and often rests on the metaphorical or anthropomorphic use of the term. Suicidal behavior might be an evolutionary jump relatively recent in our species: a byproduct of living in groups of people who are not as closely related genetically as in social groups of nonhuman mammals.

Roots Of Self-Preservation Failure In Animal Behavior, Denys Decatanzaro

Animal Sentience

Affective variation from euphoria to dysphoria, best understood in humans, is also found in the behavior and neurochemistry of many other mammals. Suicide in humans typically occurs in highly dysphoric and despondent individuals. Self-injurious behavior has been observed in dysphoric and despondent nonhuman primates. In humans, suicide is facilitated by a highly-evolved neocortex giving rise to behavioral flexibility and culture. As Peña-Guzmán indicates, some other mammals also have elaborate neocortices and the capacity for cognitive insight, particularly apes, delphinids, and whales. Suicide is most likely to occur in species where individuals live in stable groups of highly interdependent kin.

Animal Suicide And "Anthropodenial", Ryan Hediger

Animal Sentience

Increasing understanding of the impressive cognitive and social capacities of nonhuman animals suggests the possibility that they may sometimes commit suicide. Such notions tend to be dismissed as “anthropomorphism.” That interpretive hazard, I argue, must be weighed against the opposite hazard of “anthropodenial” — “the a priori rejection of shared characteristics between humans and animals” (de Waal 2006). If animals do commit suicide, how often is it motivated precisely by the impact of humans on animal life?

Continuum And Temporality, Gerard Kuperus

Animal Sentience

I fully support the continuum proposed in the target article and argue along the same lines that we should be suspicious of drawing any strict borders between human and non-human animals. Since we can say very little with absolute certainty about human intentions regarding suicide, we have no certainty about the intentions of non-human animals. Although I am very sympathetic to Peña-Guzmán’s overall argument, I suggest that time could be taken into consideration as well.

Thinking About Thinking Chickens, Lori Marino

Animal Sentience

This response focuses on three major conceptual threads that run through the peer commentary on my target article: (1) how the use of chickens influences our views of them, (2) whether education is effective, and (3) what components of chicken psychology are most relevant to understanding who chickens are.

Ms Environmental Biology Capstone Project, Meghan Mcgill

Regis University Student Publications (comprehensive collection)

This study aims to provide a deeper understanding of the role of competition in food webs, and more specifically, in trophic cascades induced by biodiversity loss. Trophic cascades are food web disturbances that result from the removal of an important species, often a predator, and lead to dramatic changes in herbivore and plant populations. It is critical to understand the mechanisms that drive and mitigate trophic cascades, because global biodiversity loss is increasing. Previous research suggests that biodiversity, specifically intraguild biodiversity with members in the same trophic level, is an important factor in reducing the negative effects of trophic cascades. …