Population Biology Commons^™

Ex Uno Plures: Clonal Reinforcement Drives Evolution Of A Simple Microbial Community, Margie A. Kinnersley, Jared Wenger, Evgueny Kroll, Julian Adams, Gavin Sherlock, Frank Rosenzweig

Biological Sciences Faculty Publications

A major goal of genetics is to define the relationship between phenotype and genotype, while a major goal of ecology is to identify the rules that govern community assembly. Achieving these goals by analyzing natural systems can be difficult, as selective pressures create dynamic fitness landscapes that vary in both space and time. Laboratory experimental evolution offers the benefit of controlling variables that shape fitness landscapes, helping to achieve both goals. We previously showed that a clonal population of E. coli experimentally evolved under continuous glucose limitation gives rise to a genetically diverse community consisting of one clone, CV103, that …

Stop Lion Hunting, Paul A. Johnsgard

Paul Johnsgard Collection

According to my informal tally, at least seven mountain lions have so far been killed in Nebraska during 2014, as follows: 1 & 2: Two were killed on January 1 and 2, at the start of Nebraska's first hunting season. Both were killed by treeing the animals with dogs, then shooting them execution style. One was killed by a man who bought the permit ($13,500) at auction; the other by a teenager who won a Game & Park's fund -raising lottery. 3: An adult male was accidentally killed by a vehicle on February 1, in Sioux County. 4: An adult …

Cercyonis Pegala Agawamensis (Satyridae): A New Butterfly Subspecies From The Coastal Salt Marshes Of The Northeastern United States Of America, Matthew D. Arey, Alex Grkovich

The Taxonomic Report of the International Lepidoptera Survey

A new subspecies of the Common Wood Nymph (Cercyonis pegala) from the New England coastline in the northeastern region of the United States is described on the basis of phenotype, behavior, habitat, seasonality, flight period, and phenology. Agawamensis is univoltine as in all pegala. The newly described subspecies occurs almost entirely in coastal salt marshes and estuarine meadows, quite atypical as understood for Cercyonis pegala. The newly described subspecies agawamensis predominately prefers and occurs within large open salt marshes but can also be found in similar habitat along smaller tidal rivers, coastal inlets and streams

A Case Of Sympatric Celastrina Ladon (Cramer), Celastrina Lucia (W. Kirby) And Celastrina Neglecta (Edwards) (Lycaenidae: Polyommatinae) In Northern Virginia, With Additional Records Of C. Lucia In Virginia, Harry Pavulaan

The Taxonomic Report of the International Lepidoptera Survey

A case of fully sympatric Celastrina ladon, C. lucia, and early spring brood C. neglecta is documented at a site in northern Virginia. Observations indicate that all three species occupy the same habitat, fly during the same flight period and utilize the same hostplant with no evidence of hybridization. C. ladon and C. lucia are obligate univoltines while C. neglecta is multivoltine. A later flight (second brood) of Celastrina neglecta at the same site utilizes eriophyid mite-induced leaf galls on the very same host tree species. Additional Virginia records of C. lucia are documented.

Larval Host Plants Of Enodia Anthedon, Satyrodes Appalachia And S. Eurydice In Vermont, Usa, David J. Hoag

The Taxonomic Report of the International Lepidoptera Survey

Field observation and captive rearing was used to clarify larval host plant use in Enodia anthedon, Satyrodes appalachia, and S. eurydice in Vermont, USA. In nature S. appalachia larvae were found on Carex lacustris, C. lupulina, C. gracillima, and C. tuckermanii. Enodia anthedon in nature was found to oviposit on grass and on Carex lacustris. Larvae of E. anthedon were found on C. lacustris and C. lupulina. In captivity, all but two E. anthedon larvae chose Carex over grass. Both E. appalachia and E. anthedon …

Comparing Population Density Estimation Techniques For Columbia Black-Tailed Deer (Odocoileus Hemionus Columbianus): Fecal Standing Crop And Distance Sampling Methods, Jubilee D. Brenneman

Honors Projects

I estimated deer density and population size on Blakely Island, WA, using the fecal standing crop (FSC) method described by Martin et al. (2011). I compared the FSC method with a well established and broadly applicable estimation method, distance sampling. Additionally, architecture of a commonly browsed shrub, Ocean Spray (Holodiscus discolor), was measured as an indicator of browsing pressure. Fecal standing crop was estimated by counting pellet groups along 26, 100 x 2m line transects. Deer density was estimated using these data and the equation derived by Martin et al. (2011). Distance sampling consisted of recording perpendicular distance …

Human Diversity In Jordan: Polymorphic Alu Insertions In General Jordanian And Bedouin Groups, Daniela Zanetti, May Sadiq, Robert Carreras-Torres, Omar Khabour, Almuthanna Alkaraki, Esther Esteban, Marc Via, Pedro Moral

Human Biology Open Access Pre-Prints

Jordan, located in the Levant region, is a crucial area to investigate human migration between Africa and Eurasia. Even thought, the genetic history of Jordanians is far to be clarified including the origin of the Bedouins today resident in Jordan. Here, we provide new genetic data on autosomal independent markers in two Jordanian population samples (Bedouins and general population) in order to approach the genetic diversity inside this country and to give new information about the genetic position of these populations in the frame of the Mediterranean and Middle East area. The analyzed markers are 18 Alu polymorphic insertions characterized …

Human Paternal Lineages, Languages And Environment In The Caucasus, David Tarkhnishvili, Alexander Gavashelishvili, Marine Murtskhvaladze, Mariam Gabelaia, Gigi Tevzadze

Human Biology Open Access Pre-Prints

Publications that describe the human Y-DNA haplogroup composition in different ethnic or linguistic groups and geographic regions provide no explicit explanation of the distribution of human paternal lineages in relation to specific ecological conditions. Our research attempts to address this topic for the Caucasus – a geographic region that encompasses a relatively small area but harbors high linguistic, ethnic, and Y-DNA haplogroup diversity. 224 men that identified themselves as ethnic Georgian were genotyped for Y-chromosome 23 STR markers and assigned to their geographic places of origin. The genotyped data were supplemented with the published data on the haplogroup composition and …

Coral-Fish Dynamics And Interactions: A Case Study Of Grand Cayman, Eileen Shea Davis

Lawrence University Honors Projects

To better understand the ecological interactions of coral reefs, it is important to understand the mechanisms that control the distribution and abundance of reef-building corals as well as the mechanisms that control the diversity and abundance of the fish community that inhabits these reef habitats. The purpose of this study was to identify specific coral-fish interactions among the reefs of Grand Cayman in order to gain insight into the biological effects of fish on the assemblage of hard corals. Using data collected by the Lawrence University Marine Program (LUMP), a number of exploratory statistical analyses were run in order to …

Phylogeography Of E1b1b1b-M81 Haplogroup And Analysis Of Its Subclades In Morocco, Ahmed Reguig, Nourdin Harich, Abdelhamid Barakat, Hassan Rouba

Human Biology Open Access Pre-Prints

In this work, we have analyzed a total of 295 unrelated Berber-speaking men from the northern, center and southern of Morocco, in order to characterize frequency of E1b1b1b-M81 haplogroup and to refine the phylogeny of its subclades: E1b1b1b1-M107, E1b1b1b2-M183 and E1b1b1b2a-M165. For this purpose, we have typed four biallelic polymorphisms: M81, M107, M183 and M165. As results, a large majority of the Berber-speaking male lineages belong to the Y chromosomal E1b1b1b-M81 haplogroup. The frequency ranged from 79.1 to 98.5% in all localities sampled. Then, the E1b1b1b2-M183 was the most dominant subclade in our samples, which ranged from 65.1% to 83.1%. …

Mitochondrial Dna Variability Among Six South-American Amerindian Villages From The Pano Linguistic Group, Celso T. Mendes-Junior, Aguinaldo L. Simoes

Human Biology Open Access Pre-Prints

Although scattered throughout a large geographic area, the members of the Pano linguistic group present strong ethnic, linguistic and cultural homogeneity, a feature that causes them to be considered as components of a same “Pano” tribe. Nevertheless, the genetic homogeneity between Pano villages has not been examined before. To study the genetic structure of the Pano linguistic group, four major Native American mitochondrial DNA (mtDNA) founder haplogroups were analyzed in 77 Amerindians from six villages of four Pano tribes (Katukina, Kaxináwa, Marúbo, and Yaminawa) located in the Brazilian Amazon. The central position of these tribes in the continent makes them …

The Neotropical Genus Austrolebias: An Emerging Model Of Annual Killifishes, Nibia Berois, María J. Arezo, Rafael O. De Sá

Biology Faculty Publications

Annual fishes are found in both Africa and South America occupying ephemeral ponds that dried seasonally. Neotropical annual fishes are members of the family Rivulidae that consist of both annual and non-annual fishes. Annual species are characterized by a prolonged embryonic development and a relatively short adult life.

Males and females show striking sexual dimorphisms, complex courtship, and mating behaviors. The prolonged embryonic stage has several traits including embryos that are resistant to desiccation and undergo up to three reversible developmental arrests until hatching. These unique developmental adaptations are closely related to the annual fish life cycle and are the …

Western Massasauga (Sistrurus Tergeminus): Species Conservation Assessment, Melissa J. Panella, Brent D. Johnson

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Western Massasauga (Sistrurus tergeminus) as a Tier I at-risk species. Provided are some general management recommendations regarding Western Massasaugas. Conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of this at-risk species that will aid in the decision-making process or …

Questioning The “Melting Pot”: Analysis Of Alu Inserts In Three Population Samples From Uruguay, Pedro C. Hidalgo, Patricia Mut, Elizabeth Ackermann, Gonzalo Figueiro, Monica Sans

Human Biology Open Access Pre-Prints

The way that immigrants integrate to recipient societies has been discussed for decades, mainly from the perspective of the social sciences. Uruguay, as other American countries, received different waves of European immigrants, although the details of the process of assimilation, when occurred, are unclear. In this paper, we use genetic markers to understand the process experienced by the Basques, one of the major migration waves that populated Uruguay, and its relation to other immigrants as well as to Native American and African descendants. For this purpose, we analyze the allele frequencies of ten ALU loci (A25, ACE, APOA1, B65, F13B, …

Monarch Butterfly (Danaus Plexippus) Tree Preference And Intersite Movement At California Overwintering Sites, Jessica Lynn Griffiths

Master's Theses

Managing Monarch butterfly overwintering groves: making room among the eucalyptus

Proper management and conservation of the coastal California overwintering sites used by western Monarch butterflies (Danaus plexippus L.) is critical for continued use of these sites by monarchs. Many management efforts are currently concentrating on eucalyptus-only sites because of the prevailing notion that monarchs prefer eucalyptus over native tree species. Yet, whether a preference exists or not has never been tested. Herein, we test the “eucalyptus preference” hypothesis with data from five overwintering sites comprised of blue gum eucalyptus (Eucalyptus globulus) and at least one other native tree …

Joint Phenotypes, Evolutionary Conflict And The Fundamental Theorem Of Natural Selection, David C. Queller

Biology Faculty Research

Multiple organisms can sometimes affect a common phenotype. For example, the portion of a leaf eaten by an insect is a joint phenotype of the plant and insect and the amount of food obtained by an offspring can be a joint trait with its mother. Here, I describe the evolution of joint phenotypes in quantitative genetic terms. A joint phenotype for multiple species evolves as the sum of additive genetic variances in each species, weighted by the selection on each species. Selective conflict between the interactants occurs when selection takes opposite signs on the joint phenotype. The mean fitness of …

A Male Spider’S Ornamentation Polymorphism Maintained By Opposing Selection With Two Niches, Bo Deng, Alex Estes, Brett Grieb, Douglas Richard, Brittney Hinds, Eileen Hebets

Eileen Hebets Publications

The Levene mechanism to maintain genotypic polymorphism by opposing selection on genotypes in multiple niches was proposed 60 years ago, and yet no systems were found to satisfy the mechanisms rather restrictive conditions. Reported here is such an example that a wolf spider population lives in a habitat of mixed rocks and leafy litter for which the females are phenotypically indistinguishable and the males have two distinct phenotypes subject to opposing selection with respect to the substrates. Census data is best-fitted to a population genetics model of the Levene type. A majority of the best fit support polymorphism, with many …

Accuracy Or Precision: Implications Of Sample Design And Methodology On Abundance Estimation, Lucas K. Kowalewski

School of Natural Resources: Dissertations, Theses, and Student Research

Estimation of population size by spatially replicated counts (point-count method) has been used for many large-scale animal-monitoring programs, yet its application in aquatic environments has been limited. Multiple site-specific estimates of abundance can be averaged and combined with covariate data to predict total abundance across an area of interest. Covariate data also provide an understanding of the relationship between abundance and habitat use, which is a fundamental interest of many animal-population investigations. Design of sampling scenarios for point-count population-estimate surveys can influence the accuracy and precision of the population estimate. The first objective of this study was to examine how …

Inter-And Intra-Population Variability Across The Transcriptome Of Lake Baikal’S Endemic Copepod With Ramifications For Adapting To Climate Change, Larry L. Bowman Jr

Electronic Theses and Dissertations

The future of Lake Baikal’s biodiversity is uncertain in response to climate change. Unlike its diverse benthos, Lake Baikal’s zooplankton is species poor, with up to 96% of its biomass being composed of a single Calanoid copepod species, Epischura baikalensis. This study characterizes the genetic differentiation and differential gene expression of E. baikalensis. Using partial-transcriptome sequences obtained by 454 Rosche and Illumina sequencing technologies, the genetic differentiation at inferred single nucleotide polymorphism (SNP) sites and differential gene expression in populations sampled from various parts of the lake were analyzed. The functional genomics of genes showed significant differential …

Pronghorn (Antilocapra Americana) Offspring Recruitment On The Carrizo Plain National Monument: Evaluating The Effects Of Low Population Density And Marginal Habitat Quality., Diego Ramirez Johnson

UNLV Theses, Dissertations, Professional Papers, and Capstones

Demographic fluctuation among ungulate populations is strongly linked to variability in recruitment. Rates of recruitment are subject to various forms of density-dependent and density-independent regulation. For species which benefit from the presence of conspecifics, reduced population density can decrease rates of recruitment and trigger a decline in per capita growth. Termed the Allee effect, this scenario can cause demographic collapse and population extinction. For many ungulate species, predation on juveniles is reduced when the timing and distribution of births is synchronized within a local population. Because birth synchrony is density-dependent, it may act as a mechanism for the Allee effect …