Ecology and Evolutionary Biology Commons^™

Composition Of The Adult Digestive Tract Bacterial Microbiome Based On Seven Mouth Surfaces, Tonsils, Throat And Stool Samples, Nicola Segata, Susan Kinder Haake, Peter Mannon, Katherine P. Lemon, Levi Waldron, Dirk Gevers, Curtis Huttenhower, Jacques Izard

Department of Food Science and Technology: Faculty Publications

Background: To understand the relationship between our bacterial microbiome and health, it is essential to define the microbiome in the absence of disease. The digestive tract includes diverse habitats and hosts the human body’s greatest bacterial density. We describe the bacterial community composition of ten digestive tract sites from more than 200 normal adults enrolled in the Human Microbiome Project, and metagenomically determined metabolic potentials of four representative sites.

Results: The microbiota of these diverse habitats formed four groups based on similar community compositions: buccal mucosa, keratinized gingiva, hard palate; saliva, tongue, tonsils, throat; sub- and supra-gingival plaques; …

Seasonal Food Habits Of Burrowing Owls (Athene Cunicularia) In Human-Altered Landscapes, Carie Marie Wingert

Master's Theses

In 2004, I initiated a year-long study to investigate the food habits of burrowing owls (Athene cunicularia). Burrowing owls have been found in a variety of human-altered landscapes; however, little is known about burrowing owl food habits in urban landscapes. Burrowing owl food habits during the non-breeding season are also largely undocumented, despite increasing concern over the survival of overwintering burrowing owls. Differences in prey consumption between reproductive and non-reproductive owls during the breeding season have not yet been examined. I collected pellets over a 12 month period at four study sites affected by different levels of human …

Notes: Red-Tailed Hawk Predation Of A Striped Skunk, Steven G. Platt, Thomas R. Rainwater

The Prairie Naturalist

Skunks (Mephitidae) are capable of projecting pungent, oily musk from paired anal glands (Verts 1967), which acts as a central nervous system depressant (Wade- Smith and Verts 1982), and can incapacitate birds of prey if directed into the eyes (Garcelon 1981). Consequently, few raptors are known to prey on striped skunks (Mephitis mephitis). Great horned owls (Bubo virginianus) are the only raptor that regularly preys on skunks (Bent 1938b, Lowery 1974, Houston et al. 1998), although occasional instances of predation by golden eagles (Aquila chrysaetos; Olendorff 1976, Palmer 1988a), bald eagles (Haliaeetus leucocephalis; Broley 1952, Wade-Smith and Verts 1982), northern …

Spatial Ecology Of Urban Raccoons In Northeastern Ohio: Implications For Oral Rabies Vaccination, Are R. Berentsen, Mike R. Dunbar, Chadd E. Fitzpatrick, W. David Walter

The Prairie Naturalist

In 1977, rabies was detected in a raccoon (Procyon lotor) in West Virginia, and since the mid-1980s raccoon variant rabies has spread throughout the eastern United States and moved west as far as the eastern edge of Cleveland, Ohio. The primary tool to combat this spread is the distribution of oral rabies vaccine (ORV) baits. A thorough knowledge of raccoon space use is critical in determining bait placement, particularly in urban areas. We monitored nine raccoons in urban areas of Cleveland, Ohio, calculated home range sizes, monitored raccoon movement with respect to potential movement barriers, and used resource selection functions …

Review: Mammals Of Colorado. Second Edition. David M. Armstrong, James P. Fitzgerald, And Carron A. Meaney., Thomas J. O'Shea

The Prairie Naturalist

In my view, the second edition of Mammals of Colorado is among the finest state-level books on mammals available. The book is a major revision of the first edition (Fitzgerald et al. 1994) and is a reference worth having, even if the first edition is already at hand. In this review, T summarize aspects of the new volume and provide comparisons to the first edition in an effort to persuade the reader that this is indeed the case.

The first four chapters of the second edition include background information and updated material about Colorado environments, mammals in general, the history …

Microhabitat Selection By Bobcats In The Badlands And Black Hills Of South Dakota, Usa: A Comparison Of Prairie And Forested Habitats, Cory E. Mosby, Troy W. Grovenburg, Robert W. Klaver, Greg M. Schroeder, Lowell E. Schmitz, Jonathan A. Jenks

The Prairie Naturalist

An understanding of habitat selection is important for management of wildlife species. Although bobcat (Lynx rufus) resource selection has been addressed in many regions of the United States, little work has been conducted in the Northern Great Plains. From 2006–2008 we captured and radiocollared 20 bobcats in the Badlands (n = 10) and Black Hills (n = 10) regions of South Dakota. During the summers of 2008 and 2009 we collected habitat measurements at 349 (176 Badlands, 176 Black Hills) bobcat locations and 321 (148 Badlands, 173 Black Hills) random sites. Microhabitat characteristics at bobcat use sites varied with region …

Least And Merriam’S Shrews From Banner County, Nebraska, Jennifer N. Merlino, Alexandra R. Frohberg, Jamie Harmon, Keith Geluso

The Prairie Naturalist

Four species of shrews occur in the panhandle of western Nebraska – the masked shrew (Sorex cinereus), Merriam’s shrew (S. merriami), dwarf shrew (S. nanus), and least shrew (Cryptotis parva; Genoways et al. 2008). Little information is known regarding the distribution and habitat of those species due to few captures of individuals throughout the region (e.g., Jones 1964, Freeman et al. 1993, Benedict et al. 1999, 2000, Geluso et al. 2004). To date, no shrew has been reported from the southwestern part of the panhandle in Banner, Kimball, or Cheyenne counties. Here we present distributional records for the least shrew …

Spatiotemporal Variation In Vegetation Structure Resulting From Pyric-Herbivory, Sherry Leis, Lloyd W. Morrison, Michael D. Debacker

The Prairie Naturalist

Pyric-herbivory is a process that is widely assumed to create greater habitat heterogeneity in grasslands at the landscape scale than could be achieved by either fire or grazing alone. Yet, few studies have actually quantified the effects of pyric- herbivory on vegetation structure within layers of the grass canopy. Here we quantify the effects of pyric-herbivory on a pasture at Tallgrass Prairie National Preserve in Kansas. We subdivided the pasture into three patches and burned one patch each year in a three-year rotation. We estimated visual obstruction for 25-cm strata and recorded maximum vegetation height. We found that recently burned …

Grass And Canada Goldenrod (Solidago Canadensis) Competition And Implications For Management In The Northern Tallgrass Prairie, Alexander J. Smart, Gary E. Larson, Peter J. Bauman

The Prairie Naturalist

Canada goldenrod (Solidago canadensis L.) is a native perennial forb that can form dense clonal patches and become weedy in pastures of the Northern Tallgrass Prairie Ecoregion. Our objectives were to determine 1) the competitive effects between Canada goldenrod and grass, 2) the relationship between Canada goldenrod stem density and grass biomass, and 3) the distribution of Canada goldenrod stem density at the pasture scale. We used regression analysis to develop a relationship between Canada goldenrod stem density and grass biomass. Additionally, we estimated the frequency distribution of Canada goldenrod stem density categories using three evenly distributed 100 × 100-m …

Sickleweed On The Fort Pierre National Grassland: An Emerging Threat, Jack L. Bulter, Stefanie D. Wacker

The Prairie Naturalist

We report the first detailed field survey of sickleweed (Falcaria vulgaris L.) in the United States. Sickleweed is native to Europe, the Mediterranean, Asia Minor, and Iran and was first reported in the United States in 1922. It is listed by the Nebraska Invasive Species Council as a Category II invasive plant species. In recent years, abundance and distribution of sickle- weed has increased dramatically in and around the Fort Pierre National Grassland (FPNG), South Dakota. Management of such a rapidly expanding population is hampered by a general lack of baseline information on the biology and ecology of sickleweed. We …

The Dynamics Of Location: Influence Of Predation By Chaoborus Larvae On Rotifer Diel Vertical Migration Patterns, Kristina P. Riemer

Lawrence University Honors Projects

The locations of freshwater organisms in lakes are determined by the convergence of many competing factors. While predation pressure is one of these, also important are areas of food concentration and the physical and chemical constraints of a system. Diel vertical migration is a behavior exhibited by freshwater organisms in many taxa that is the result of balancing these factors. Diel vertical migration consists of movement by these organisms throughout the water column in accordance with a 24 hour cycle. This oscillation is generally driven by the competing factors of predation pressure and food acquisition, and is modified by physical …

Macrophyte Communities Of Lake Winnebago: Baseline Study Of Species Composition With Abundances And Water Quality Conditions, Mackenzie Kessenich

Lawrence University Honors Projects

Historical records from Lake Winnebago show minimal macrophyte growth; however, reports from recent years claim that macrophyte growth in some areas of the lake has reached nuisance levels. This study aimed to investigate the species of macrophytes present and their abundances in four near-shore locations, as well as measurements of multiple water quality conditions. Rake sampling was used to identify species and quantify their abundances and distributions. In addition, data were collected on light penetration, Secchi depths, and suspended algae chlorophyll concentrations at each site. These data from shallow near-shore sites reveal trends in changing water clarity and light penetration …

Squalicorax Chips A Tooth: A Consequence Of Feeding-Related Behavior From The Lowermost Navesink Formation (Late Cretaceous: Campanian-Maastrichtian) Of Monmouth County, New Jersey, Usa, Martin A. Becker, John A. Chamberlain Jr.

Publications and Research

Chipped and broken functional teeth are common in modern sharks with serrated tooth shape. Tooth damage consists of splintering, cracking, and flaking near the cusp apex where the enameloid is broken and exposes the osteodentine and orthodentine. Such damage is generally viewed as the result of forces applied during feeding as the cusp apex impacts the skeletal anatomy of prey. Damage seen in serrated functional teeth from sharks Squalicorax kaupi [1] and Squalicorax pristodontus [1] from the late Cretaceous lowermost Navesink Formation of New Jersey resembles that occurring in modern sharks and suggests similar feeding behavior. Tumbling experiments using serrated …

The Effects Of A Riverline Flood On The Ecology And Habitat Of The Swainson's Warbler And A Test Of The Swainson's Warbler's Habitat Sustainability Index, Bryan Michael Reiley

Student Theses and Dissertations

We attempted to validate the recently published Habitat Suitability Index (HSI) model for the Swainson's Warbler using data collected between 2005 and 2010 at Big Island (BI), White River National Wildlife Refuge (WRNWR), and Saint Francis National Forest (SFNF). The Swainson's Warbler HSI was tested in two ways; by comparing unoccupied and occupied location HSI scores and by comparing forest stand HSI scores to abundance estimates of Swainson's Warblers in each stand. We found HSI scores were significantly lower (P = 0.006) for sites occupied by Swainson's Warblers (mean = 0.66) than those that were unoccupied (mean = 0.77) at …

Will Extreme Climatic Events Facilitate Biological Invasions?, Jeffrey M. Diez, Carla M. D'Antonio, Jeffrey S. Dukes, Edwin D. Grosholz, Julian D. Olden, Cascade J.B. Sorte, Dana M. Blumenthal, Bethany A. Bradley, Regan I. Early, Inés Ibáñez, Sierra J. Jones, Joshua J. Lawler, Luke P. Miller

Faculty Publications, Biological Sciences

Extreme climatic events (ECEs) – such as unusual heat waves, hurricanes, floods, and droughts – can dramatically affect ecological and evolutionary processes, and these events are projected to become more frequent and more intense with ongoing climate change. However, the implications of ECEs for biological invasions remain poorly understood. Using concepts and empirical evidence from invasion ecology, we identify mechanisms by which ECEs may influence the invasion process, from initial introduction through establishment and spread. We summarize how ECEs can enhance invasions by promoting the transport of propagules into new regions, by decreasing the resistance of native communities to establishment, …

Phylogenetic Relationships And Character Evolution Of The Neotropical Butterfly Genus Hamadryas (Nymphalidae: Biblidinae), Ivonne J. Garzon

LSU New Orleans Theses and Dissertations

The butterflies in the genus Hamadryas are popular and noticeable representatives of the Neotropical Lepidoptera fauna. After a thorough taxonomic revision, 20 species were acknowledged within the genus, however no hypothesis of their phylogenetic relationship was proposed. The present dissertation provides a step further into the understanding of this fascinating group of butterflies not only by proposing the first phylogenetic hypothesis for the genus based on morphological and molecular data, but also by exploring for the first time in a group of butterflies the potential effect of venation associated with an specific behaviour on wing shape. Furthermore, this dissertation provides …

Fish Assemblage Dynamics And Red Drum Habitat Selection In Bayou St. John And Associated Urban Waterways Located Within The City Of New Orleans, Louisiana, Patrick W. Smith Mr.

LSU New Orleans Theses and Dissertations

Bayou St. John (BSJ) and City Park Lakes and Lagoons (CPLL) are urban waterways in New Orleans, Louisiana. I studied habitat selection of red drum in BSJ, and fish assemblage change in BSJ and CPLL over 40 years. Temperature was found to be the best predictor of red drum habitat selection in Bayou St. John, while salinity and change in depth also were found to be good predictors for certain sites. Potential prey item abundance did not appear to influence habitat selection. Using data from 1971 – 2010, nearshore habitats in CPLL were affected by Hurricane Katrina, but have sense …

Implications Of Land Development On Nomadic Pastoralism: Ecological Relaxation And Biosocial Diversity In Human Populations, Hannah R. Bradley

Scripps Senior Theses

Nomadic pastoralism is an ancient subsistence strategy, historically balanced and in continuity with sedentary societies. Sedentarization of nomads occurs normally because of ecological disasters, economic opportunities, urbanization, and government policy. In this paper, I examine the effect of changing land use patterns on nomadic pastoral populations in Asia, Africa, and the Middle East, using biogeographic methodology to further explore the contemporary relationship between humans and their environments. Nomadic population information gleaned from diverse ethnographic studies, and GIS data on anthropogenic biome distributions, were used to calculate changes in nomadic population, area of developed land, and nomadic/sedentary population density over the …

Devil In A Hula Skirt: Comparative Conservation Efforts Between The United States And Australia Using Two Endemic Species As Case Studies, Sarah Catherine Kuchinsky

Undergraduate Honors Thesis Collection

There is a biodiversity crisis in our midst. An abundance of technology and innovation in the last 200 years has revamped our world but at the cost of pushing many species to extinction. Since the passing of the Endangered Species Act by Congress in 1973, more than 100 species in the United States have disappeared (Wilson 2006). The International Union for the Conservation of Nature (IUCN) stats that "19,265 species out of the 59,507 so far assessed as threatened with extinction," (IUCN 2011). Extinction is the result of a combination of factors caused by human environmental disturbance. Disturbances in the …

Pre-Whaling Genetic Diversity And Population Ecology In Eastern Pacific Gray Whales: Insights From Ancient Dna And Stable Isotopes, S Elizabeth Alter, Seth D. Newsome, Stephen R. Palumbi

Publications and Research

Commercial whaling decimated many whale populations, including the eastern Pacific gray whale, but little is known about how population dynamics or ecology differed prior to these removals. Of particular interest is the possibility of a large population decline prior to whaling, as such a decline could explain the ,5-fold difference between genetic estimates of prior abundance and estimates based on historical records. We analyzed genetic (mitochondrial control region) and isotopic information from modern and prehistoric gray whales using serial coalescent simulations and Bayesian skyline analyses to test for a pre-whaling decline and to examine prehistoric genetic diversity, population dynamics and …