What Taking Development Seriously Means For Evolutionary Theory,
2023
University of New Mexico
What Taking Development Seriously Means For Evolutionary Theory, David C. Witherington, Robert Lickliter, David S. Moore
Pitzer Faculty Publications and Research
Proponents of the Extended Evolutionary Synthesis (EES) emphasize the critical role that organisms and their development play in the process of evolution. This framework explicitly rejects the genocentric focus that once dominated interpretations of the Modern Synthesis in evolutionary theory. In place of genocentrism, EES highlights processes like niche construction, developmental constraint, and extragenetic inheritance as central to any understanding of evolutionary process. However, much more is at stake in adopting the EES than simply moving beyond the gene-dominant viewpoint of the Modern Synthesis. The EES, in fact, represents a fundamental challenge to the core of classic Darwinism itself by …
Multilevel Selection On Social Network Traits Differs Between Sexes In Experimental Populations Of Forked Fungus Beetles,
2023
Swarthmore College
Multilevel Selection On Social Network Traits Differs Between Sexes In Experimental Populations Of Forked Fungus Beetles, R. A. Costello, P. A. Cook, E. D. Brodie Iii, Vincent A. Formica
Biology Faculty Works
Both individual and group behavior can influence individual fitness, but multilevel selection is rarely quantified on social behaviors. Social networks provide a unique opportunity to study multilevel selection on social behaviors, as they describe complex social traits and patterns of interaction at both the individual and group levels. In this study, we used contextual analysis to measure the consequences of both individual network position and group network structure on individual fitness in experimental populations of forked fungus beetles (Bolitotherus cornutus) with two different resource distributions. We found that males with high individual connectivity (strength) and centrality (betweenness) had …
Proposing An Rna Interference (Rnai)-Based Treatment For Human Immunodeficiency Virus (Hiv) By Analyzing The Post-Transcriptional Gene Targeting Of Sars-Cov-2, Hepatitis C Virus, And A549 Lung Cancer Cells,
2023
Virginia Commonwealth University
Proposing An Rna Interference (Rnai)-Based Treatment For Human Immunodeficiency Virus (Hiv) By Analyzing The Post-Transcriptional Gene Targeting Of Sars-Cov-2, Hepatitis C Virus, And A549 Lung Cancer Cells, Arjun Jagdeesh
UROP Posters
Human Immunodeficiency Virus (HIV) is a retrovirus that infects CD4+ T cell lymphocytes in humans, leading to the development of Acquired Immunodeficiency Syndrome (AIDS) if left untreated. While current treatment methods, including antiretroviral combination treatments, effectively limit HIV replication, HIV can evade these treatments due to its high mutation rate. Long-term antiretroviral treatment can also be toxic to patients, meaning patients would benefit from a new mechanism of HIV treatment. RNA interference (RNAi) is an antiviral pathway found in mammals, plants, and insects that involves a small-interfering RNA that is incorporated into a protein complex called the RNA-induced Silencing Complex …
Nuclear Phylogeny And Insights Into Whole-Genome Duplications And Reproductive Development Of Solanaceae Plants,
2023
Bucknell University
Nuclear Phylogeny And Insights Into Whole-Genome Duplications And Reproductive Development Of Solanaceae Plants, Jie Wang, Weibin Xu, Junwen Zhai, Yi Hu, Jing Guo, Caifei Zhang, Yiyong Zhao, Lin Zhang, Christopher T. Martine, Hong Ma, Chien-Hsun Huang
Faculty Journal Articles
Solanaceae, the nightshade family, have ∼2700 species, including the important crops potato and tomato, ornamentals, and medicinal plants. Several sequenced Solanaceae genomes show evidence for whole-genome duplication (WGD), providing an excellent opportunity to investigate WGD and its impacts. Here, we generated 93 transcriptomes/genomes and combined them with 87 public datasets, for a total of 180 Solanaceae species representing all four subfamilies and 14 of 15 tribes. Nearly 1700 nuclear genes from these transcriptomic/genomic datasets were used to reconstruct a highly resolved Solanaceae phylogenetic tree with six major clades. The Solanaceae tree supports four previously recognized subfamilies (Goetzeioideae, Cestroideae, Nicotianoideae, …
Quantitative Song Variety In Relation To Genotype In A Hybridizing Chickadee Population,
2023
Missouri State University
Quantitative Song Variety In Relation To Genotype In A Hybridizing Chickadee Population, Shelby Madison Palmer
Graduate Theses/Dissertations
The Black-capped chickadee (Poecile atricapillus) and Carolina chickadee (P. carolinensis) are North American songbird species that hybridize in a narrow contact zone stretching latitudinally from New Jersey to Kansas, USA. The association between genetic ancestry and song type in this hybrid zone has been studied independently several times and found to be minimal or absent, likely due to the influence of cultural transmission on learned song in the oscine passerine clade to which the chickadees belong. Despite this, the song of both species remains remarkably distinct in allopatry, suggesting a genetic constraint on certain qualities of …
Evolution Of The Diets Of Australian Possums (Marsupialia: Phalangeriformes) From The Etadunna Formation In The Lake Eyre Basin, South Australia,
2023
Eastern Washington University
Evolution Of The Diets Of Australian Possums (Marsupialia: Phalangeriformes) From The Etadunna Formation In The Lake Eyre Basin, South Australia, Theodore C. Wheat
EWU Masters Thesis Collection
The Lake Eyre Basin in South Australia holds Australia’s oldest known fossil marsupials representing both extant and extinct families in the Etadunna Formation, a formation that spans nearly two million years from 23.3 to 25 MA. During that two-million-year period, the terrestrial herbivorous marsupials present in the area underwent a dramatic transition both taxonomically and dentally, likely brought on by a changing environment caused by a warming climate. However, it is unknown whether a similar change occurred to the marsupials like possums that live up in the canopy. Understanding this could help determine how extensively this change in the environment …
Attack Of The Clones: Elucidating The Role Of Clonality In The Invasion Success Of Carpobrotus Edulis,
2023
California State University - San Bernardino
Attack Of The Clones: Elucidating The Role Of Clonality In The Invasion Success Of Carpobrotus Edulis, Eduardo Luis Cruz
Electronic Theses, Projects, and Dissertations
Transcriptomics is a modern technique in genomics that utilizes RNA sequences to get a snapshot of genetic expression. This is a powerful tool in non-model species lacking a reference genome. Thus, the application of comparative transcriptomics has the potential to help us elucidate the evolutionary mechanisms that facilitate species invasion. Carpobrotus edulis is a prolific and widespread invasive succulent plant belonging to the Aizoaceae family. A native to South Africa, this species has become a dominant invader of many Mediterranean coastal areas. In this study, we leveraged the use of RNAseq to investigate evolutionary changes among invasive populations. RNA-seq data …
Biomechanics Of Mantis Prey Capture,
2023
Colby College
Biomechanics Of Mantis Prey Capture, Danielle S. Taylor
Honors Theses
Mantis species have a variety of different morphologies, so do the extreme forms of mantis limbs trade prey catching capability for camouflage? We hypothesize that some extreme forms of mantis limbs that are associated with cryptic species may be associated with a tradeoff of the capability of those limbs. Previous research has developed 2D morphologies of several hundred species of mantises. We are creating a 3D morphology by using micro dissection, micro CT imaging to construct our 3D biomechanical model. We found the attachment points of the ligaments and muscles from a Tenodera forearm and have constructed a 2D biomechanical …
Variation In Soil-Mediated Drought Response Traits Between Sympatric Species Of Mimulus,
2023
Scripps College
Variation In Soil-Mediated Drought Response Traits Between Sympatric Species Of Mimulus, Anna Reitman
Scripps Senior Theses
The ‘time limitation hypothesis’ is an evolutionary theory regarding evolution in angiosperms. The theory attributes ephemeral drought stress to transitions from a perennial to annual life history and an animal- to self-pollinating mating style. The most influential edaphic parameter on water availability is soil texture (i.e. grain size) due to its controls on porosity. Adhesion weakens with coarseness allowing for expedited rates of water loss via evaporation and percolation. The potential implications of coarse soil textures on major transitions in angiosperms due to drought mediation as the ‘time-limitation hypothesis’ proposes has yet to be thoroughly examined. Here, we grew two …
Between Choice And Compulsion: An Examination And Critique Of The Evolution Of 'Original Sin',
2023
Missouri State University
Between Choice And Compulsion: An Examination And Critique Of The Evolution Of 'Original Sin', Matthew James Wynn
Graduate Theses/Dissertations
“Why are we the way that we are?” is one of the hardest questions to answer because it requires grasping the origin of human beings. This has left philosophers and theologians in century-long debates on forming a “cosmogony of ontology” (i.e., how the origin of the universe informs the human condition). The concept, “original sin” was developed by a North African theologian named Augustine (354 – 430 CE). Augustine’s reading of Genesis 3, and inaccurate translation of Romans 5:12, taught that a person is born morally culpable for a fault antecedent to their existence. This way of thinking about the …
The Anatomy And Phylogeny Of A New Large Plioplatecarpine Mosasaur From The Campanian Bearpaw Shale Of Montana (Usa),
2023
Fort Hays State University
The Anatomy And Phylogeny Of A New Large Plioplatecarpine Mosasaur From The Campanian Bearpaw Shale Of Montana (Usa), Richard A. Carr
Master's Theses or Doctor of Nursing Practice
In 2018, a large and associated plioplatecarpine mosasaur skull, pectoral girdle, and rib cage, whose total body length may have exceeded five meters, was uncovered in the Late Campanian Bearpaw Shale of Northeast Montana (USA). Phylogenetic analysis of this specimen, MOR 10855, recovers this individual as a basal member of the genus Plioplatecarpus. This specimen, is unique in that it is estimated to be nearly twice the size of any of the other species of Plioplatecarpus found in the Western Interior Seaway during this part of the Cretaceous. While the included phylogenetic study suggests MOR 10855 represents a new …
Plant Sentience Revisited: Sifting Through The Thicket Of Perspectives,
2023
University of Murcia
Plant Sentience Revisited: Sifting Through The Thicket Of Perspectives, Paco Calvo, Miguel Segundo-Ortin
Animal Sentience
In our target article (Segundo-Ortin & Calvo 2023), we proposed the intriguing possibility of plant sentience, drawing parallels with non-human animal studies. This response aims to sift through the rich thicket of perspectives offered by our commentators. To do so, we assess the risks of employing double standards, as well as the tendencies of anthropomorphizing and zoomorphizing in plant studies. We also emphasize the need for clarity in linguistic and conceptual terms, examine the neurophysiological evidence for plant sentience, and discuss the ethical implications of such recognition.
A Cladoxylopsid With Complex Vascular Architecture From The Early Devonian Battery Point Formation (Québec, Canada),
2023
Cal Poly Humboldt
A Cladoxylopsid With Complex Vascular Architecture From The Early Devonian Battery Point Formation (Québec, Canada), Jessica Chu
Cal Poly Humboldt theses and projects
Cladoxylopsids are seed-free plants that formed the world’s earliest forests and gave rise to horsetails (sphenopsids), but their evolutionary origins are poorly understood. Here, I describe a new Early Devonian cladoxylopsid from the Emsian (400-395 Ma) Battery Point Formation (Québec, Canada). The structural features of this plant indicate taxonomic affinity to cladoxylalean cladoxylopsids and its phylogenetic position supports placement in genus Cladoxylon (the proposed name, Cladoxylon kespekianum sp. nov., to be formalized by peer-reviewed publication). Specimens of this plant are permineralized in calcium carbonate and were studied using the acetate peel technique with light and electron microscopy. Cladoxylon kespekianum is …
Investigation Of The Segment Polarity Network In The Tardigrade Hypsibius Exemplaris,
2023
University of North Florida
Investigation Of The Segment Polarity Network In The Tardigrade Hypsibius Exemplaris, Taylor R. Harrison
UNF Graduate Theses and Dissertations
Segmentation has facilitated the evolution of the many forms of the panarthropods. Downstream regulation of segmentation is controlled by the highly conserved segment polarity network which includes the genes engrailed (en), hedgehog (hh), wingless (wg), cubitus interruptus (ci), patched (ptc), and smoothend (smo). While a high level of conservation has been seen in both the arthropods and onychophorans, only en has been described in any representatives of Tardigrada. Previous work had already established the loss of wg, which encodes for a Wnt ligand, in the tardigrade H. exemplaris …
Placing The Evolutionary History Of Desmognathus Salamanders In Context: A Phylogeographic Approach,
2023
University of Kentucky
Placing The Evolutionary History Of Desmognathus Salamanders In Context: A Phylogeographic Approach, Kara Jones
Theses and Dissertations--Biology
Patterns of genetic variation do not arise in a vacuum but are instead shaped by the interplay between evolutionary forces and ecological constraints. Here, I use a phylogeographic approach to examine the role that ecology played in lineage divergence in the Desmognathus quadramaculatus species complex (Family: Plethodontidae), which consists of three nominal species: D. quadramaculatus, D. marmoratus, and D. folkertsi. Previous phylogenetic studies have shown that individuals from these species do not form clades based on phenotype. My approach to reconciling phylogenetic discordance was two-fold, using (1) genome-wide markers to provide insight into the …
The Systems Measurement Of Mammalian Biotas, Part Two,
2023
Western Kentucky University
The Systems Measurement Of Mammalian Biotas, Part Two, Charles H. Smith, Patrick Georges, Ngoc Nguyen
Faculty/Staff Personal Papers
For a recent publication, the authors identified a seven-region model of mammal family distribution patterns, in which each unit contributes equally to the system’s overall statistical characteristics of diversity, despite its individual units having measurably different levels of diversity and endemism. This systemization presents a highly efficient descriptive model that can possibly be interpreted as a form of natural classification. An additional analysis of the same mode is described here, in which the seven-region model of the distribution of mammal families’ spatial affinities is shown to closely approach a most-probable-state arrangement, as assessed through combinatorics, raising some important questions about …
Plant Sentience? Between Romanticism And Denial: Science,
2023
University of Murcia
Plant Sentience? Between Romanticism And Denial: Science, Miguel Segundo-Ortin, Paco Calvo
Animal Sentience
A growing number of non-human animal species are being seriously considered as candidates for sentience, but plants are either forgotten or explicitly excluded from these debates. In our view, this is based on the belief that plant behavior is hardwired and inflexible and on an underestimation of the role of plant electrophysiology. We weigh such assumptions against the evidence to suggest that it is time to take seriously the hypothesis that plants, too, might be sentient. We hope this target article will serve as an invitation to investigate sentience in plants with the same rigor as in non-human animals.
Genetic And Environmental Contributions To Wolbachia-Induced Cytoplasmic Incompatibility,
2023
University of Montana, Missoula
Genetic And Environmental Contributions To Wolbachia-Induced Cytoplasmic Incompatibility, Kelley Van Vaerenberghe
Graduate Student Theses, Dissertations, & Professional Papers
Maternally-transmitted Wolbachia infect the cells of most insect species, but their frequencies in host populations vary. While much of their success can be attributed to their ability to manipulate host reproduction, these manipulations are context-dependent, varying due to several biotic and abiotic factors. Wolbachia’s most common manipulation, cytoplasmic incompatibility (CI), is a conditional sterility phenotype where male-female host compatibility depends on their infection status. Specifically, CI occurs when infected males produce modified sperm that cause increased embryonic lethality unless the female carries a similar infection. Rescuing their eggs from CI increases the relative fitness of infected females, promoting Wolbachia spread …
A Comparison Of Seasonal Reproductive Pattern In Two Sympatric Darters Of The Simoperca Clade, Etheostoma Duryi And Etheostoma Simoterum,
2022
University of Alabama in Huntsville
A Comparison Of Seasonal Reproductive Pattern In Two Sympatric Darters Of The Simoperca Clade, Etheostoma Duryi And Etheostoma Simoterum, Tiffany Bell, Elizabeth Cantrell, Bruce Stallsmith
Southeastern Fishes Council Proceedings
We present results from an examination of the seasonal reproductive patterns of two closely related sympatric darter species of the Simoperca clade, Etheostoma duryi and Etheostoma simoterum. Most members of the genus Etheostoma exhibit striking sexual dimorphism, making reproductive strategy a logical point of study. Monthly collections of specimens over a one-year period were performed at a single site on the Flint River near Huntsville, Alabama. Standard length and gross somatic mass were measured for all individuals. Sex ratio was examined for possible skew. Measures of reproductive effort were monthly means of gonadosomatic index of both sexes, total oocyte count, …
Effects Of Riverine Barriers On Avian Evolution In The Amazon Basin,
2022
Louisiana State University and Agricultural and Mechanical College
Effects Of Riverine Barriers On Avian Evolution In The Amazon Basin, Andre Eugene Moncrieff
LSU Doctoral Dissertations
The high biodiversity found in the Amazon Basin has long captivated the attention of naturalists and evolutionary biologists seeking to explain its origins. Early observations by Alfred Wallace highlighted the role of rivers in delimiting the geographic ranges of many species; furthermore, where rivers narrow towards their headwaters, he noted that some species cross rivers freely. A major goal of this dissertation is to investigate how these and other observations about riverine barriers might inform our understanding of how speciation unfolds in Amazonia. My approach involved generating genomic data with dense geographic sampling for manakins in the genus Lepidothrix, …
